Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21140

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,569,748	+		DZA65_RS21135	0.72	+0.4
4,569,748	+		DZA65_RS21135	0.72	-2.0
4,569,748	+		DZA65_RS21135	0.72	-1.0
4,569,748	+		DZA65_RS21135	0.72	+0.3
4,569,749	-		DZA65_RS21135	0.72	-0.6
4,569,784	+				-1.0
4,569,785	-		DZA65_RS21135	0.75	-0.8
4,569,884	+		DZA65_RS21135	0.83	+0.6
4,569,885	-		DZA65_RS21135	0.83	+1.6
4,569,885	-		DZA65_RS21135	0.83	+0.5
4,569,885	-		DZA65_RS21135	0.83	+0.6
4,569,885	-		DZA65_RS21135	0.83	+0.6
4,569,885	-		DZA65_RS21135	0.83	-0.7
4,569,973	-				-0.3
4,569,973	-				+0.4
4,569,973	-				-2.7
4,569,978	+				+0.0
4,569,978	+				+1.6
4,569,979	-				-0.4
4,569,979	-				-1.0
4,570,054	+				+0.3
4,570,146	+				+0.6
4,570,193	+				+0.7
4,570,193	+				+0.3
4,570,194	-				-0.1
4,570,194	-				+0.7
4,570,194	-				-0.6
4,570,194	-				+1.4
4,570,198	+				-1.9
4,570,198	+				-0.1
4,570,199	-				+1.9
4,570,199	-				+0.1
4,570,224	+				-0.5
4,570,244	+				+1.2
4,570,244	+				+0.3
4,570,244	+				+0.2
4,570,244	+				-0.3
4,570,245	-				-0.8
4,570,245	-				-1.1
4,570,245	-				+1.1
4,570,245	-				+0.1
4,570,245	-				+1.2
4,570,245	-				+0.3
4,570,298	+				-0.3
4,570,298	+				-0.4
4,570,298	+				+1.8
4,570,298	+				-0.6
4,570,299	-				+0.1
4,570,299	-				+0.6
4,570,299	-				+0.3
4,570,299	-				+0.3
4,570,299	-				-0.8
4,570,325	+				+2.5
4,570,326	-				+0.9
4,570,326	-				-1.0
4,570,326	-				+0.0
4,570,344	+				-0.3
4,570,344	+				-1.0
4,570,344	+				-0.1
4,570,344	+				-0.4
4,570,344	+				-0.3
4,570,344	+				-0.2
4,570,344	+				-0.8
4,570,344	+				-0.4
4,570,345	-				+0.0
4,570,345	-				+0.8
4,570,345	-				-0.6
4,570,345	-				+0.2
4,570,345	-				+0.8
4,570,345	-				+0.5
4,570,345	-				+1.3
4,570,345	-				+1.8
4,570,345	-				-0.4
4,570,345	-				-0.0
4,570,345	-				-0.1
4,570,345	-				+0.3
4,570,345	-				+1.3
4,570,364	+				-0.2
4,570,365	-				-0.1
4,570,365	-				+1.2
4,570,365	-				-0.1
4,570,464	-				+0.2
4,570,630	+				+0.1
4,570,630	+				-1.7
4,570,630	+				+0.5
4,570,630	+				-1.3
4,570,631	-				-1.4
4,570,631	-				+0.1
4,570,631	-				+0.8
4,570,637	+				-0.1
4,570,637	+				-1.2
4,570,637	+				-0.7
4,570,637	+				-0.9
4,570,638	-				-0.0
4,570,668	+				-1.7
4,570,668	+				-0.8
4,570,668	+				-0.1
4,570,669	-				-2.0
4,570,669	-				-2.4
4,570,669	-				-1.5
4,570,754	+				+0.1
4,570,754	+				-0.4
4,570,754	+				+0.3
4,570,754	+				-0.0
4,570,754	+				-0.6
4,570,755	-				-0.6
4,570,760	+				-0.4
4,570,760	+				-1.0
4,570,761	-				-1.0
4,570,761	-				-0.5
4,570,761	-				+1.1
4,570,821	-				-0.8
4,570,845	+		DZA65_RS21140	0.12	-0.8
4,570,846	-		DZA65_RS21140	0.12	+0.3
4,570,846	-		DZA65_RS21140	0.12	+0.3
4,570,846	-		DZA65_RS21140	0.12	-0.1
4,570,872	-				-1.0
4,571,004	+		DZA65_RS21140	0.25	-0.8
4,571,004	+		DZA65_RS21140	0.25	+0.3
4,571,005	-		DZA65_RS21140	0.26	-2.4
4,571,097	+		DZA65_RS21140	0.34	-1.6
4,571,098	-		DZA65_RS21140	0.34	+0.6
4,571,098	-		DZA65_RS21140	0.34	-2.6
4,571,117	+		DZA65_RS21140	0.35	-0.4
4,571,117	+		DZA65_RS21140	0.35	+0.3
4,571,134	+		DZA65_RS21140	0.37	-0.1
4,571,134	+		DZA65_RS21140	0.37	-1.3
4,571,134	+		DZA65_RS21140	0.37	+0.2
4,571,135	-		DZA65_RS21140	0.37	-0.4
4,571,158	+				+3.4
4,571,158	+		DZA65_RS21140	0.39	+0.8
4,571,158	+		DZA65_RS21140	0.39	-1.1
4,571,158	+		DZA65_RS21140	0.39	-0.1
4,571,158	+		DZA65_RS21140	0.39	-1.2
4,571,209	-		DZA65_RS21140	0.43	-1.2
4,571,211	+		DZA65_RS21140	0.43	+0.2
4,571,211	+		DZA65_RS21140	0.43	-1.6
4,571,212	-		DZA65_RS21140	0.43	-2.6
4,571,212	-		DZA65_RS21140	0.43	-0.3
4,571,212	-		DZA65_RS21140	0.43	-0.3
4,571,212	-		DZA65_RS21140	0.43	-1.2
4,571,250	+		DZA65_RS21140	0.47	+1.6
4,571,481	+		DZA65_RS21140	0.67	+0.7
4,571,481	+		DZA65_RS21140	0.67	-0.4
4,571,481	+		DZA65_RS21140	0.67	+0.2
4,571,482	-		DZA65_RS21140	0.67	-0.4
4,571,482	-		DZA65_RS21140	0.67	-0.6
4,571,482	-		DZA65_RS21140	0.67	-2.6
4,571,482	-		DZA65_RS21140	0.67	-2.0
4,571,511	+		DZA65_RS21140	0.69	-1.9
4,571,518	-				-0.4
4,571,683	+		DZA65_RS21140	0.84	-1.4
4,571,683	+		DZA65_RS21140	0.84	-1.7
4,571,683	+		DZA65_RS21140	0.84	-2.2
4,571,684	-		DZA65_RS21140	0.84	+1.1
4,571,713	+		DZA65_RS21140	0.87	+0.1
4,571,870	+				+0.0
4,571,870	+				-0.7
4,571,870	+				-0.4
4,571,870	+				-0.3
4,571,870	+				+1.2
4,571,870	+				-0.7
4,571,870	+				-2.4
4,571,870	+				-0.0
4,571,870	+				-1.9
4,571,870	+				-0.8
4,571,870	+				+0.1
4,571,870	+				+0.3
4,571,871	-				+0.2
4,571,871	-				+0.7
4,571,871	-				+1.1
4,571,871	-				+0.6
4,571,871	-				+0.7
4,571,871	-				-0.6
4,571,937	+				+1.6
4,571,937	+				-0.8
4,571,937	+				+0.0
4,571,937	+				-0.5
4,571,937	+				+0.9
4,571,937	+				+0.9
4,571,937	+				-2.0
4,571,937	+				-1.2
4,571,937	+				-1.4
4,571,937	+				+0.5
4,571,938	-				-0.4
4,571,938	-				-0.7
4,571,938	-				+0.6
4,571,938	-				+0.5
4,571,938	-				+0.3
4,571,938	-				+1.1
4,571,938	-				-0.4
4,571,938	-				+1.6
4,571,938	-				-1.7
4,571,938	-				-0.3
4,571,938	-				-1.2
4,571,938	-				-1.0
4,571,938	-				+0.1
4,571,938	-				+0.8
4,571,938	-				+1.0
4,571,938	-				+0.6
4,571,943	-				-0.4
4,571,943	-				+1.8
4,571,943	-				+0.5
4,571,981	-				-0.1
4,571,981	-				-1.0
4,572,136	+		DZA65_RS21145	0.25	-0.6
4,572,136	+		DZA65_RS21145	0.25	-0.5
4,572,136	+		DZA65_RS21145	0.25	-0.2
4,572,136	+		DZA65_RS21145	0.25	-0.7
4,572,136	+		DZA65_RS21145	0.25	-1.0
4,572,136	+		DZA65_RS21145	0.25	+0.4
4,572,137	-		DZA65_RS21145	0.25	-0.9
4,572,137	-		DZA65_RS21145	0.25	-0.1
4,572,137	-		DZA65_RS21145	0.25	-0.3
4,572,137	-		DZA65_RS21145	0.25	+0.4
4,572,137	-		DZA65_RS21145	0.25	-0.3
4,572,389	+		DZA65_RS21145	0.58	+0.3
4,572,390	-		DZA65_RS21145	0.58	-2.2
4,572,390	-		DZA65_RS21145	0.58	+1.0
4,572,390	-		DZA65_RS21145	0.58	-1.4
4,572,444	+		DZA65_RS21145	0.65	+1.6
4,572,445	-		DZA65_RS21145	0.65	+0.1
4,572,445	-		DZA65_RS21145	0.65	-1.2
4,572,445	-		DZA65_RS21145	0.65	-2.4
4,572,445	-		DZA65_RS21145	0.65	+1.6
4,572,483	+		DZA65_RS21145	0.70	-0.7
4,572,483	+		DZA65_RS21145	0.70	+1.0
4,572,483	+		DZA65_RS21145	0.70	-0.7
4,572,483	+		DZA65_RS21145	0.70	+0.4
4,572,483	+		DZA65_RS21145	0.70	-0.3
4,572,483	+		DZA65_RS21145	0.70	-0.0
4,572,484	-		DZA65_RS21145	0.70	+1.2
4,572,502	-		DZA65_RS21145	0.73	+0.6
4,572,535	+		DZA65_RS21145	0.77	-1.4
4,572,536	-		DZA65_RS21145	0.77	+0.9
4,572,536	-		DZA65_RS21145	0.77	-1.7
4,572,686	-				-0.7
4,572,686	-				+0.2
4,572,698	+				+1.3
4,572,704	-				+1.6
4,572,774	+				-1.1
4,572,774	+				-0.5
4,572,774	+				-0.6
4,572,775	-				+0.0
4,572,775	-				-0.4
4,572,795	+		DZA65_RS21150	0.11	+0.3
4,572,795	+		DZA65_RS21150	0.11	-0.4
4,572,795	+		DZA65_RS21150	0.11	-1.2
4,572,795	+		DZA65_RS21150	0.11	-1.7