Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19590

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,243,132	+				+0.8
4,243,133	-				+0.3
4,243,133	-				+2.0
4,243,262	+				+0.2
4,243,262	+				+0.3
4,243,262	+				+0.6
4,243,262	+				+0.4
4,243,263	-				-1.0
4,243,263	-				+0.7
4,243,280	-				-0.3
4,243,280	-				-2.8
4,243,280	-				-1.6
4,243,288	+				+0.9
4,243,308	-				-0.5
4,243,311	+				+0.9
4,243,311	+				-3.2
4,243,311	+				+0.2
4,243,311	+				-0.7
4,243,311	+				+0.6
4,243,312	-				-1.1
4,243,376	+				+0.1
4,243,377	-				-1.4
4,243,377	-				+0.3
4,243,377	-				-0.5
4,243,403	+				-0.1
4,243,403	+				-0.7
4,243,403	+				-0.2
4,243,404	-				+0.4
4,243,404	-				-0.1
4,243,440	-				+1.1
4,243,534	-		DZA65_RS19590	0.10	-0.1
4,243,631	-		DZA65_RS19590	0.18	-2.7
4,243,631	-		DZA65_RS19590	0.18	-0.9
4,243,631	-		DZA65_RS19590	0.18	-0.7
4,243,631	-		DZA65_RS19590	0.18	+0.5
4,243,652	-		DZA65_RS19590	0.20	-1.2
4,243,665	+		DZA65_RS19590	0.21	+0.1
4,243,665	+		DZA65_RS19590	0.21	+0.9
4,243,665	+		DZA65_RS19590	0.21	-0.6
4,243,665	+		DZA65_RS19590	0.21	-0.6
4,243,665	+		DZA65_RS19590	0.21	+1.0
4,243,665	+		DZA65_RS19590	0.21	+0.2
4,243,665	+		DZA65_RS19590	0.21	-0.3
4,243,666	-		DZA65_RS19590	0.21	-0.2
4,243,666	-		DZA65_RS19590	0.21	+0.1
4,243,666	-		DZA65_RS19590	0.21	-0.4
4,243,666	-		DZA65_RS19590	0.21	-0.1
4,243,669	+		DZA65_RS19590	0.22	+0.8
4,243,670	-		DZA65_RS19590	0.22	+0.1
4,243,682	-		DZA65_RS19590	0.23	-0.1
4,243,704	+				+0.5
4,243,705	-		DZA65_RS19590	0.25	-0.7
4,243,705	-		DZA65_RS19590	0.25	-0.5
4,243,743	+				-0.5
4,243,743	+		DZA65_RS19590	0.28	-0.8
4,243,743	+				-0.1
4,243,743	+		DZA65_RS19590	0.28	-0.2
4,243,743	+		DZA65_RS19590	0.28	-1.1
4,243,743	+		DZA65_RS19590	0.28	+1.3
4,243,743	+		DZA65_RS19590	0.28	+0.5
4,243,743	+		DZA65_RS19590	0.28	+0.5
4,243,743	+		DZA65_RS19590	0.28	+0.1
4,243,744	-		DZA65_RS19590	0.28	-1.4
4,243,744	-		DZA65_RS19590	0.28	+1.0
4,243,744	-		DZA65_RS19590	0.28	-0.4
4,243,744	-		DZA65_RS19590	0.28	+0.5
4,243,744	-				+2.1
4,243,744	-		DZA65_RS19590	0.28	+0.8
4,243,817	-		DZA65_RS19590	0.34	+0.6
4,243,839	+		DZA65_RS19590	0.36	+0.1
4,243,839	+		DZA65_RS19590	0.36	-2.1
4,243,839	+		DZA65_RS19590	0.36	+0.1
4,243,839	+		DZA65_RS19590	0.36	-0.7
4,243,839	+		DZA65_RS19590	0.36	+0.6
4,243,839	+		DZA65_RS19590	0.36	-2.5
4,243,839	+		DZA65_RS19590	0.36	-0.6
4,243,839	+		DZA65_RS19590	0.36	+1.1
4,243,839	+		DZA65_RS19590	0.36	-0.7
4,243,839	+		DZA65_RS19590	0.36	+0.7
4,243,839	+		DZA65_RS19590	0.36	-0.1
4,243,839	+				+0.5
4,243,839	+		DZA65_RS19590	0.36	-0.4
4,243,839	+		DZA65_RS19590	0.36	+0.0
4,243,839	+		DZA65_RS19590	0.36	+1.1
4,243,840	-		DZA65_RS19590	0.36	-0.9
4,243,840	-		DZA65_RS19590	0.36	-0.2
4,243,840	-		DZA65_RS19590	0.36	-1.4
4,243,840	-		DZA65_RS19590	0.36	-0.5
4,243,840	-		DZA65_RS19590	0.36	-0.9
4,243,840	-		DZA65_RS19590	0.36	-1.8
4,243,840	-		DZA65_RS19590	0.36	-0.5
4,243,840	-		DZA65_RS19590	0.36	+0.1
4,243,840	-		DZA65_RS19590	0.36	+0.2
4,243,840	-		DZA65_RS19590	0.36	-0.5
4,243,840	-		DZA65_RS19590	0.36	-0.9
4,243,840	-		DZA65_RS19590	0.36	-0.3
4,243,840	-		DZA65_RS19590	0.36	+0.5
4,243,840	-		DZA65_RS19590	0.36	+0.4
4,243,840	-		DZA65_RS19590	0.36	-0.1
4,243,840	-		DZA65_RS19590	0.36	+0.0
4,243,908	+		DZA65_RS19590	0.42	+0.2
4,243,908	+		DZA65_RS19590	0.42	+0.2
4,243,908	+		DZA65_RS19590	0.42	-0.5
4,243,908	+		DZA65_RS19590	0.42	-0.8
4,243,908	+		DZA65_RS19590	0.42	-0.3
4,243,908	+		DZA65_RS19590	0.42	+0.5
4,243,908	+		DZA65_RS19590	0.42	-0.5
4,243,909	-		DZA65_RS19590	0.42	-1.3
4,243,909	-		DZA65_RS19590	0.42	+1.8
4,243,909	-		DZA65_RS19590	0.42	+0.5
4,243,950	+		DZA65_RS19590	0.45	-1.1
4,243,950	+		DZA65_RS19590	0.45	-0.9
4,243,951	-		DZA65_RS19590	0.45	+0.7
4,243,951	-		DZA65_RS19590	0.45	+0.7
4,243,951	-		DZA65_RS19590	0.45	+1.0
4,243,951	-		DZA65_RS19590	0.45	-0.2
4,243,951	-		DZA65_RS19590	0.45	-0.2
4,243,951	-		DZA65_RS19590	0.45	-1.1
4,243,951	-		DZA65_RS19590	0.45	+0.5
4,244,072	+		DZA65_RS19590	0.55	+0.7
4,244,088	+		DZA65_RS19590	0.57	-0.1
4,244,088	+		DZA65_RS19590	0.57	-1.7
4,244,088	+		DZA65_RS19590	0.57	-2.7
4,244,089	-		DZA65_RS19590	0.57	-0.3
4,244,089	-		DZA65_RS19590	0.57	-0.5
4,244,089	-		DZA65_RS19590	0.57	+0.8
4,244,089	-		DZA65_RS19590	0.57	-3.2
4,244,089	-		DZA65_RS19590	0.57	+0.5
4,244,109	+		DZA65_RS19590	0.58	-0.4
4,244,109	+		DZA65_RS19590	0.58	+0.3
4,244,109	+		DZA65_RS19590	0.58	-3.4
4,244,109	+		DZA65_RS19590	0.58	+0.1
4,244,109	+		DZA65_RS19590	0.58	-2.5
4,244,109	+		DZA65_RS19590	0.58	-1.8
4,244,109	+		DZA65_RS19590	0.58	+1.3
4,244,110	-		DZA65_RS19590	0.58	-0.5
4,244,110	-		DZA65_RS19590	0.58	+0.9
4,244,110	-		DZA65_RS19590	0.58	+0.5
4,244,110	-		DZA65_RS19590	0.58	-1.5
4,244,110	-		DZA65_RS19590	0.58	-0.6
4,244,110	-		DZA65_RS19590	0.58	-1.6
4,244,110	-		DZA65_RS19590	0.58	+0.1
4,244,232	+		DZA65_RS19590	0.69	+0.1
4,244,232	+		DZA65_RS19590	0.69	+0.5
4,244,242	+		DZA65_RS19590	0.70	+1.2
4,244,242	+		DZA65_RS19590	0.70	+0.8
4,244,243	-		DZA65_RS19590	0.70	-0.3
4,244,243	-		DZA65_RS19590	0.70	+0.0
4,244,269	+		DZA65_RS19590	0.72	-0.4
4,244,270	-		DZA65_RS19590	0.72	+0.2
4,244,293	+		DZA65_RS19590	0.74	-0.7
4,244,294	-		DZA65_RS19590	0.74	-2.1
4,244,299	+		DZA65_RS19590	0.74	+0.4
4,244,299	+		DZA65_RS19590	0.74	-0.5
4,244,299	+		DZA65_RS19590	0.74	+0.5
4,244,299	+		DZA65_RS19590	0.74	+0.5
4,244,299	+		DZA65_RS19590	0.74	+0.3
4,244,300	-		DZA65_RS19590	0.74	-0.3
4,244,300	-		DZA65_RS19590	0.74	-1.8
4,244,357	+		DZA65_RS19590	0.79	+0.8
4,244,357	+		DZA65_RS19590	0.79	-0.3
4,244,357	+		DZA65_RS19590	0.79	-0.1
4,244,366	-		DZA65_RS19590	0.80	-0.5
4,244,366	-		DZA65_RS19590	0.80	-0.5
4,244,366	-		DZA65_RS19590	0.80	-1.5
4,244,401	+		DZA65_RS19590	0.83	-0.2
4,244,401	+		DZA65_RS19590	0.83	+0.7
4,244,402	-		DZA65_RS19590	0.83	+0.5
4,244,441	-		DZA65_RS19590	0.86	-0.7
4,244,458	+		DZA65_RS19590	0.88	+0.1
4,244,459	-		DZA65_RS19590	0.88	+0.8
4,244,464	+		DZA65_RS19590	0.88	-2.3
4,244,464	+		DZA65_RS19590	0.88	-1.5
4,244,464	+		DZA65_RS19590	0.88	+0.3
4,244,465	-		DZA65_RS19590	0.88	-1.0
4,244,473	+		DZA65_RS19590	0.89	-0.5
4,244,473	+		DZA65_RS19590	0.89	+0.8
4,244,473	+		DZA65_RS19590	0.89	-1.3
4,244,474	-		DZA65_RS19590	0.89	+0.7
4,244,474	-		DZA65_RS19590	0.89	-0.1
4,244,496	+				-1.6
4,244,496	+				+1.4
4,244,521	+				-2.1
4,244,522	-				-2.5
4,244,557	-				+0.8
4,244,557	-				+0.5
4,244,573	-				-0.1
4,244,605	+				+0.5
4,244,605	+				-0.7
4,244,605	+				+1.2
4,244,605	+				+0.8
4,244,605	+				-0.1
4,244,605	+				+0.0
4,244,605	+				+1.2
4,244,606	-				+0.8
4,244,606	-				-0.4
4,244,606	-				+0.4
4,244,606	-				-0.2
4,244,606	-				-1.2
4,244,606	-				+0.2
4,244,606	-				-0.5
4,244,606	-				-0.3
4,244,606	-				+0.5
4,244,606	-				-0.5
4,244,607	+				+0.7
4,244,607	+				-0.2
4,244,607	+				+0.2
4,244,607	+				-0.2
4,244,607	+				+0.4
4,244,607	+				-1.3
4,244,607	+				-0.2
4,244,607	+				+0.1
4,244,607	+				-0.2
4,244,607	+				-1.8
4,244,607	+				-0.5
4,244,607	+				-1.1
4,244,608	-				+0.2
4,244,608	-				-0.5
4,244,608	-				-0.3
4,244,608	-				-1.7
4,244,608	-				-0.6
4,244,608	-				-1.6
4,244,608	-				+1.0
4,244,608	-				+0.8
4,244,608	-				-1.5
4,244,608	-				+1.2
4,244,608	-				+0.5
4,244,608	-				+1.1
4,244,608	-				+0.0
4,244,608	-				+0.8
4,244,608	-				-0.5
4,244,608	-				+0.5
4,244,621	+				+1.7
4,244,622	-				+0.7
4,244,665	+				-0.3
4,244,665	+				-1.1
4,244,666	-				+0.6
4,244,666	-				-0.3
4,244,677	+				+0.5
4,244,678	-				-0.5
4,244,678	-				+0.7
4,244,678	-				+0.2
4,244,678	-				-1.2
4,244,678	-				+0.3
4,244,693	-				-0.2
4,244,693	-				-1.5
4,244,705	+				+0.6
4,244,705	+				-0.5
4,244,711	-				+0.5
4,244,711	-				-0.6
4,244,711	-				+1.1
4,244,711	-				-0.2
4,244,730	-				-1.3
4,244,801	+				-0.5
4,244,801	+				-0.7
4,244,801	+				-1.5
4,244,802	-				+1.4
4,244,802	-				-0.5
4,244,802	-				+1.1
4,244,810	+				-0.9
4,244,811	-				+0.5
4,244,811	-				-2.0
4,244,811	-				-0.8
4,244,821	+				-0.2
4,244,822	-				+0.5
4,244,825	+				+0.5
4,244,825	+				-0.5
4,244,825	+				-1.8
4,244,833	-				+0.1
4,244,833	-				-0.9
4,244,833	-				-0.8
4,244,833	-				-0.7
4,244,835	+				-0.3
4,244,835	+				-0.0
4,244,835	+				-1.1
4,244,835	+				-1.5
4,244,835	+				+0.5
4,244,835	+				-0.3
4,244,835	+				-0.1
4,244,836	-				+0.1
4,244,850	+				+0.3
4,244,850	+				+1.1
4,244,850	+				-0.3
4,244,851	-				+0.9
4,244,851	-				-0.5
4,244,851	-				-2.1
4,244,854	+				-0.5
4,244,854	+				-2.1
4,244,854	+				-0.2
4,244,854	+				+1.9
4,244,854	+				+0.0
4,244,854	+				-2.3
4,244,854	+				-2.1
4,244,854	+				-0.1
4,244,854	+				+1.4
4,244,855	-				+0.5
4,244,855	-				-1.8
4,244,855	-				-0.8
4,244,855	-				-1.2
4,244,855	-				+0.5
4,244,855	-				-0.1
4,244,855	-				+1.1
4,244,855	-				-0.8
4,244,855	-				+0.0
4,244,855	-				+0.7
4,244,855	-				-1.5
4,244,855	-				+0.8
4,244,855	-				-0.9
4,244,855	-				+2.1
4,244,855	-				+0.2
4,244,855	-				+0.3
4,244,855	-				-2.1
4,244,855	-				-0.3
4,244,855	-				+0.9
4,244,855	-				-1.0
4,244,855	-				+0.2
4,244,857	-				-1.7
4,244,862	+				-1.8
4,244,862	+				-1.8
4,244,862	+				+2.2
4,244,862	+				+1.1
4,244,863	-				-0.2
4,244,863	-				-2.3
4,244,976	+				-0.5
4,244,976	+				-0.2
4,244,976	+				-0.3
4,244,976	+				+1.2
4,244,976	+				-0.5
4,244,976	+				-0.5
4,244,976	+				-0.5
4,244,976	+				-0.8
4,244,976	+				-0.1
4,244,977	-				-1.1
4,244,977	-				+0.1
4,244,977	-				-0.7
4,244,977	-				+0.5
4,244,977	-				-1.4
4,244,977	-				-0.1
4,244,977	-				+0.2
4,244,977	-				+0.1
4,245,061	+		DZA65_RS19595	0.11	-0.1
4,245,082	+		DZA65_RS19595	0.13	-0.5
4,245,083	-		DZA65_RS19595	0.13	-2.3
4,245,109	-		DZA65_RS19595	0.14	-2.1
4,245,201	+		DZA65_RS19595	0.19	-2.3
4,245,201	+		DZA65_RS19595	0.19	-0.2
4,245,201	+		DZA65_RS19595	0.19	-1.4
4,245,201	+		DZA65_RS19595	0.19	-0.8
4,245,201	+		DZA65_RS19595	0.19	-0.5
4,245,202	-		DZA65_RS19595	0.19	-0.5
4,245,202	-		DZA65_RS19595	0.19	+0.0
4,245,202	-		DZA65_RS19595	0.19	-1.1
4,245,202	-		DZA65_RS19595	0.19	-0.4
4,245,202	-		DZA65_RS19595	0.19	+0.5
4,245,202	-		DZA65_RS19595	0.19	+0.3
4,245,232	+		DZA65_RS19595	0.20	-1.7
4,245,232	+		DZA65_RS19595	0.20	-1.3
4,245,232	+		DZA65_RS19595	0.20	-1.1
4,245,233	-		DZA65_RS19595	0.20	+1.3
4,245,233	-				+0.5
4,245,233	-		DZA65_RS19595	0.20	-0.3
4,245,233	-		DZA65_RS19595	0.20	+0.5
4,245,233	-		DZA65_RS19595	0.20	+0.7
4,245,233	-		DZA65_RS19595	0.20	-1.1
4,245,233	-		DZA65_RS19595	0.20	-0.1
4,245,233	-		DZA65_RS19595	0.20	-0.1
4,245,354	+		DZA65_RS19595	0.26	-0.5
4,245,354	+		DZA65_RS19595	0.26	+1.4
4,245,355	-		DZA65_RS19595	0.26	-0.5
4,245,355	-		DZA65_RS19595	0.26	-1.7
4,245,355	-		DZA65_RS19595	0.26	-0.5
4,245,456	+		DZA65_RS19595	0.31	+0.6
4,245,456	+		DZA65_RS19595	0.31	-0.6
4,245,456	+		DZA65_RS19595	0.31	-2.8
4,245,457	-		DZA65_RS19595	0.32	+0.2
4,245,457	-		DZA65_RS19595	0.32	+0.6
4,245,457	-		DZA65_RS19595	0.32	+0.2
4,245,457	-		DZA65_RS19595	0.32	-1.3
4,245,507	+		DZA65_RS19595	0.34	+0.2
4,245,507	+		DZA65_RS19595	0.34	-2.1
4,245,508	-		DZA65_RS19595	0.34	-0.7
4,245,508	-		DZA65_RS19595	0.34	-2.1
4,245,515	-		DZA65_RS19595	0.34	-0.7
4,245,515	-		DZA65_RS19595	0.34	-0.2
4,245,602	-		DZA65_RS19595	0.39	-0.5