Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18145

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,906,078	+				+0.2
3,906,079	-				+1.2
3,906,115	+				+0.2
3,906,182	-				+0.5
3,906,313	+		DZA65_RS18140	0.13	+0.3
3,906,314	-		DZA65_RS18140	0.13	+0.2
3,906,314	-		DZA65_RS18140	0.13	-0.4
3,906,314	-		DZA65_RS18140	0.13	+1.1
3,906,494	+		DZA65_RS18140	0.35	+0.7
3,906,494	+		DZA65_RS18140	0.35	+1.8
3,906,494	+		DZA65_RS18140	0.35	-0.6
3,906,494	+		DZA65_RS18140	0.35	+1.6
3,906,494	+		DZA65_RS18140	0.35	-0.3
3,906,495	-		DZA65_RS18140	0.36	-1.3
3,906,495	-		DZA65_RS18140	0.36	+0.4
3,906,495	-				+0.1
3,906,495	-		DZA65_RS18140	0.36	-0.1
3,906,495	-		DZA65_RS18140	0.36	-1.2
3,906,495	-		DZA65_RS18140	0.36	-3.2
3,906,495	-		DZA65_RS18140	0.36	+0.7
3,906,564	+		DZA65_RS18140	0.44	-1.3
3,906,600	+		DZA65_RS18140	0.49	-0.7
3,906,600	+		DZA65_RS18140	0.49	+0.2
3,906,664	-		DZA65_RS18140	0.57	-1.3
3,906,709	-		DZA65_RS18140	0.62	+1.8
3,906,709	-		DZA65_RS18140	0.62	+1.5
3,906,790	-		DZA65_RS18140	0.73	-0.5
3,906,797	+		DZA65_RS18140	0.73	+0.7
3,906,797	+		DZA65_RS18140	0.73	-0.3
3,906,798	-		DZA65_RS18140	0.74	-0.3
3,906,798	-		DZA65_RS18140	0.74	-1.8
3,906,881	+		DZA65_RS18140	0.84	+0.3
3,906,881	+		DZA65_RS18140	0.84	-1.5
3,906,881	+		DZA65_RS18140	0.84	-1.8
3,906,881	+		DZA65_RS18140	0.84	+0.7
3,906,881	+		DZA65_RS18140	0.84	+0.8
3,906,882	-		DZA65_RS18140	0.84	+0.5
3,906,882	-		DZA65_RS18140	0.84	+0.2
3,906,882	-		DZA65_RS18140	0.84	-0.2
3,906,900	-		DZA65_RS18140	0.86	+1.9
3,906,900	-		DZA65_RS18140	0.86	+1.2
3,906,983	-				+1.8
3,906,983	-				+0.5
3,906,983	-				-1.6
3,906,983	-				+0.5
3,907,008	+				-0.9
3,907,008	+				+0.3
3,907,008	+				-0.4
3,907,009	-				-0.5
3,907,012	-				+0.3
3,907,012	-				-1.2
3,907,012	-				+0.2
3,907,012	-				-1.1
3,907,031	+				-0.3
3,907,032	-				-0.4
3,907,032	-				-0.7
3,907,053	+				-2.1
3,907,058	+				+0.6
3,907,061	+				-1.3
3,907,061	+				+1.5
3,907,061	+				+0.4
3,907,061	+				-0.9
3,907,061	+				-0.1
3,907,061	+				+1.2
3,907,062	-				-1.3
3,907,062	-				-0.5
3,907,062	-				-0.7
3,907,071	-				-0.2
3,907,157	+				-2.3
3,907,157	+				+0.5
3,907,157	+				-1.4
3,907,157	+				-1.0
3,907,157	+				-0.3
3,907,157	+				-1.8
3,907,157	+				-0.4
3,907,158	-				-1.7
3,907,158	-				-0.0
3,907,158	-				-1.0
3,907,300	+		DZA65_RS18145	0.10	-0.1
3,907,300	+		DZA65_RS18145	0.10	-2.3
3,907,301	-		DZA65_RS18145	0.10	-0.8
3,907,301	-		DZA65_RS18145	0.10	+0.3
3,907,303	+		DZA65_RS18145	0.10	-2.6
3,907,303	+		DZA65_RS18145	0.10	-2.1
3,907,303	+		DZA65_RS18145	0.10	+1.2
3,907,304	-		DZA65_RS18145	0.10	-1.2
3,907,304	-		DZA65_RS18145	0.10	+0.3
3,907,304	-		DZA65_RS18145	0.10	-1.5
3,907,304	-		DZA65_RS18145	0.10	+0.1
3,907,304	-		DZA65_RS18145	0.10	-0.7
3,907,304	-		DZA65_RS18145	0.10	-1.5
3,907,444	-		DZA65_RS18145	0.17	-0.8
3,907,446	+		DZA65_RS18145	0.17	-0.8
3,907,446	+		DZA65_RS18145	0.17	-0.3
3,907,447	-		DZA65_RS18145	0.17	+0.9
3,907,447	-		DZA65_RS18145	0.17	-2.3
3,907,447	-		DZA65_RS18145	0.17	-0.5
3,907,642	-		DZA65_RS18145	0.25	-1.2
3,907,654	-		DZA65_RS18145	0.26	-0.1
3,907,712	+		DZA65_RS18145	0.29	+0.2
3,907,713	-		DZA65_RS18145	0.29	+0.1
3,907,713	-		DZA65_RS18145	0.29	-0.5
3,907,801	-		DZA65_RS18145	0.33	+0.1
3,907,868	+		DZA65_RS18145	0.36	+0.8
3,907,869	-		DZA65_RS18145	0.36	-1.1
3,907,869	-		DZA65_RS18145	0.36	-0.5
3,907,869	-		DZA65_RS18145	0.36	-1.1
3,907,869	-		DZA65_RS18145	0.36	-1.3
3,907,930	+		DZA65_RS18145	0.38	-2.4
3,907,930	+		DZA65_RS18145	0.38	-2.3
3,907,931	-		DZA65_RS18145	0.38	+1.2
3,907,931	-		DZA65_RS18145	0.38	+0.7
3,907,931	-				+1.8
3,907,931	-		DZA65_RS18145	0.38	+0.6
3,907,956	-		DZA65_RS18145	0.39	-0.8
3,907,956	-		DZA65_RS18145	0.39	-0.5
3,908,027	+		DZA65_RS18145	0.43	+0.5
3,908,094	-		DZA65_RS18145	0.46	+0.8
3,908,094	-		DZA65_RS18145	0.46	+0.8
3,908,178	+		DZA65_RS18145	0.49	+0.2
3,908,240	+		DZA65_RS18145	0.52	+0.4
3,908,240	+		DZA65_RS18145	0.52	-1.4
3,908,354	+		DZA65_RS18145	0.57	+0.1
3,908,381	+		DZA65_RS18145	0.58	-2.3
3,908,381	+		DZA65_RS18145	0.58	-2.1
3,908,381	+		DZA65_RS18145	0.58	-2.1
3,908,381	+		DZA65_RS18145	0.58	-1.3
3,908,381	+		DZA65_RS18145	0.58	-2.8
3,908,381	+		DZA65_RS18145	0.58	+0.1
3,908,382	-				+0.5
3,908,382	-		DZA65_RS18145	0.59	-2.5
3,908,382	-				-1.8
3,908,382	-		DZA65_RS18145	0.59	-3.0
3,908,418	+		DZA65_RS18145	0.60	+0.8
3,908,419	-		DZA65_RS18145	0.60	-0.7
3,908,441	+		DZA65_RS18145	0.61	-2.3
3,908,441	+		DZA65_RS18145	0.61	-2.0
3,908,441	+				-1.8
3,908,442	-		DZA65_RS18145	0.61	-0.5
3,908,540	+		DZA65_RS18145	0.66	-3.1
3,908,541	-		DZA65_RS18145	0.66	-1.1
3,908,541	-				-0.5
3,908,541	-		DZA65_RS18145	0.66	-0.5
3,908,541	-		DZA65_RS18145	0.66	-1.1
3,908,541	-		DZA65_RS18145	0.66	+0.3
3,908,541	-		DZA65_RS18145	0.66	-1.8
3,908,541	-		DZA65_RS18145	0.66	-1.8
3,908,541	-		DZA65_RS18145	0.66	+1.5
3,908,561	+		DZA65_RS18145	0.67	-2.0
3,908,562	-		DZA65_RS18145	0.67	-0.9
3,908,627	+		DZA65_RS18145	0.69	-0.7
3,908,627	+		DZA65_RS18145	0.69	-0.8
3,908,627	+		DZA65_RS18145	0.69	-0.5
3,908,627	+		DZA65_RS18145	0.69	-0.7
3,908,627	+		DZA65_RS18145	0.69	-2.3
3,908,628	-		DZA65_RS18145	0.70	-1.7
3,908,628	-		DZA65_RS18145	0.70	-2.7
3,908,628	-		DZA65_RS18145	0.70	-3.0
3,908,628	-		DZA65_RS18145	0.70	-1.4
3,908,628	-		DZA65_RS18145	0.70	-2.3
3,908,628	-		DZA65_RS18145	0.70	-0.0
3,908,678	+		DZA65_RS18145	0.72	-2.3
3,908,679	-		DZA65_RS18145	0.72	-1.7
3,908,679	-		DZA65_RS18145	0.72	-2.7
3,908,679	-		DZA65_RS18145	0.72	-0.4
3,908,696	+		DZA65_RS18145	0.73	+0.1
3,908,765	+		DZA65_RS18145	0.76	-0.5
3,908,765	+		DZA65_RS18145	0.76	-1.4
3,908,765	+		DZA65_RS18145	0.76	-1.7
3,908,765	+		DZA65_RS18145	0.76	-2.8
3,908,765	+		DZA65_RS18145	0.76	-2.0
3,908,765	+		DZA65_RS18145	0.76	-2.1
3,908,765	+		DZA65_RS18145	0.76	-3.0
3,908,765	+		DZA65_RS18145	0.76	-2.3
3,908,765	+		DZA65_RS18145	0.76	-1.8
3,908,765	+		DZA65_RS18145	0.76	-0.3
3,908,765	+		DZA65_RS18145	0.76	+0.5
3,908,765	+				-1.1
3,908,765	+		DZA65_RS18145	0.76	-2.5
3,908,765	+		DZA65_RS18145	0.76	-0.8
3,908,765	+		DZA65_RS18145	0.76	-2.1
3,908,766	-		DZA65_RS18145	0.76	-0.5
3,908,766	-		DZA65_RS18145	0.76	-1.1
3,908,766	-		DZA65_RS18145	0.76	-1.8
3,908,766	-		DZA65_RS18145	0.76	-1.8
3,908,766	-		DZA65_RS18145	0.76	-0.2
3,908,766	-		DZA65_RS18145	0.76	-1.8
3,908,766	-		DZA65_RS18145	0.76	+0.3
3,908,766	-		DZA65_RS18145	0.76	-1.3
3,908,766	-		DZA65_RS18145	0.76	-1.8
3,908,766	-		DZA65_RS18145	0.76	-2.3
3,908,766	-		DZA65_RS18145	0.76	-2.2
3,908,766	-		DZA65_RS18145	0.76	-1.8
3,908,769	+		DZA65_RS18145	0.76	-1.3
3,908,769	+		DZA65_RS18145	0.76	-1.8
3,908,769	+		DZA65_RS18145	0.76	-1.8
3,908,769	+		DZA65_RS18145	0.76	-0.5
3,908,770	-		DZA65_RS18145	0.76	-3.3
3,908,770	-		DZA65_RS18145	0.76	+0.2
3,908,770	-		DZA65_RS18145	0.76	-2.3
3,908,775	+		DZA65_RS18145	0.76	-3.4
3,908,776	-		DZA65_RS18145	0.76	+0.1
3,908,776	-		DZA65_RS18145	0.76	-2.3
3,908,776	-		DZA65_RS18145	0.76	-2.8
3,908,898	+		DZA65_RS18145	0.82	-0.7
3,908,898	+		DZA65_RS18145	0.82	-2.3
3,908,899	-		DZA65_RS18145	0.82	-2.6
3,908,899	-		DZA65_RS18145	0.82	-2.1
3,908,899	-		DZA65_RS18145	0.82	+0.3
3,908,952	+		DZA65_RS18145	0.84	-0.9
3,908,953	-		DZA65_RS18145	0.84	-2.7
3,908,973	+		DZA65_RS18145	0.85	-2.2
3,909,088	-				-0.1
3,909,088	-				-0.9
3,909,226	-				-1.7
3,909,226	-				-0.7
3,909,226	-				-1.1
3,909,226	-				-1.5
3,909,279	+				+1.0
3,909,299	-				-0.0
3,909,309	+				-0.3
3,909,309	+				-2.0
3,909,320	+				-1.5
3,909,378	+				-0.3
3,909,390	+				-0.1
3,909,390	+				-1.8
3,909,390	+				+0.6
3,909,390	+				+0.0
3,909,390	+				-2.2
3,909,391	-				+1.1
3,909,475	+		DZA65_RS18150	0.12	-0.0
3,909,475	+		DZA65_RS18150	0.12	+0.7
3,909,475	+		DZA65_RS18150	0.12	-1.3
3,909,475	+		DZA65_RS18150	0.12	+0.8
3,909,475	+		DZA65_RS18150	0.12	+1.2
3,909,476	-		DZA65_RS18150	0.12	-0.4
3,909,476	-		DZA65_RS18150	0.12	-2.1
3,909,476	-		DZA65_RS18150	0.12	-0.2
3,909,476	-		DZA65_RS18150	0.12	-1.5
3,909,476	-		DZA65_RS18150	0.12	+0.0
3,909,476	-		DZA65_RS18150	0.12	-0.6
3,909,477	+		DZA65_RS18150	0.12	-0.8
3,909,477	+		DZA65_RS18150	0.12	-1.5
3,909,477	+		DZA65_RS18150	0.12	+0.3
3,909,477	+		DZA65_RS18150	0.12	+1.7
3,909,477	+		DZA65_RS18150	0.12	+0.2
3,909,477	+		DZA65_RS18150	0.12	-0.3
3,909,477	+		DZA65_RS18150	0.12	+0.6
3,909,477	+		DZA65_RS18150	0.12	+0.5
3,909,477	+		DZA65_RS18150	0.12	-0.1
3,909,477	+		DZA65_RS18150	0.12	+0.2
3,909,477	+		DZA65_RS18150	0.12	-0.1
3,909,477	+		DZA65_RS18150	0.12	-0.5
3,909,477	+		DZA65_RS18150	0.12	-1.1
3,909,477	+		DZA65_RS18150	0.12	+0.6
3,909,477	+		DZA65_RS18150	0.12	-2.1
3,909,477	+		DZA65_RS18150	0.12	+1.0
3,909,477	+		DZA65_RS18150	0.12	-0.0
3,909,477	+		DZA65_RS18150	0.12	-0.1
3,909,477	+		DZA65_RS18150	0.12	+0.6
3,909,477	+		DZA65_RS18150	0.12	-0.1
3,909,477	+		DZA65_RS18150	0.12	+0.3
3,909,477	+		DZA65_RS18150	0.12	+0.8
3,909,477	+		DZA65_RS18150	0.12	+0.9
3,909,477	+		DZA65_RS18150	0.12	-0.5
3,909,477	+		DZA65_RS18150	0.12	+0.4
3,909,477	+		DZA65_RS18150	0.12	+0.5
3,909,477	+		DZA65_RS18150	0.12	-0.3
3,909,477	+		DZA65_RS18150	0.12	+0.8
3,909,478	-		DZA65_RS18150	0.12	-1.1
3,909,478	-		DZA65_RS18150	0.12	-1.3
3,909,478	-		DZA65_RS18150	0.12	-1.3
3,909,478	-		DZA65_RS18150	0.12	-1.3
3,909,478	-		DZA65_RS18150	0.12	-1.7
3,909,478	-		DZA65_RS18150	0.12	-2.3
3,909,478	-		DZA65_RS18150	0.12	-0.8
3,909,478	-		DZA65_RS18150	0.12	-0.8
3,909,478	-		DZA65_RS18150	0.12	+0.1
3,909,478	-		DZA65_RS18150	0.12	-0.0
3,909,478	-		DZA65_RS18150	0.12	-1.4
3,909,478	-		DZA65_RS18150	0.12	-1.5
3,909,478	-		DZA65_RS18150	0.12	-0.4
3,909,478	-		DZA65_RS18150	0.12	+0.5
3,909,478	-		DZA65_RS18150	0.12	-0.5
3,909,478	-		DZA65_RS18150	0.12	-0.5
3,909,479	+		DZA65_RS18150	0.12	-2.3
3,909,479	+		DZA65_RS18150	0.12	+0.7
3,909,479	+		DZA65_RS18150	0.12	+0.5
3,909,479	+		DZA65_RS18150	0.12	+1.1
3,909,479	+		DZA65_RS18150	0.12	-0.3
3,909,479	+		DZA65_RS18150	0.12	-3.3
3,909,479	+		DZA65_RS18150	0.12	-1.3
3,909,479	+		DZA65_RS18150	0.12	-2.0
3,909,479	+		DZA65_RS18150	0.12	-2.7
3,909,479	+		DZA65_RS18150	0.12	-0.0
3,909,479	+		DZA65_RS18150	0.12	+0.2
3,909,479	+		DZA65_RS18150	0.12	+1.9
3,909,479	+		DZA65_RS18150	0.12	-2.5
3,909,479	+		DZA65_RS18150	0.12	-1.1
3,909,479	+		DZA65_RS18150	0.12	+0.1
3,909,479	+		DZA65_RS18150	0.12	+0.3
3,909,479	+		DZA65_RS18150	0.12	-0.5
3,909,479	+		DZA65_RS18150	0.12	-1.2
3,909,479	+		DZA65_RS18150	0.12	-1.4
3,909,480	-		DZA65_RS18150	0.12	-0.7
3,909,480	-		DZA65_RS18150	0.12	-1.8
3,909,480	-		DZA65_RS18150	0.12	-0.8
3,909,480	-		DZA65_RS18150	0.12	-1.3
3,909,480	-		DZA65_RS18150	0.12	-0.3
3,909,480	-		DZA65_RS18150	0.12	-1.1
3,909,480	-		DZA65_RS18150	0.12	+0.3
3,909,480	-		DZA65_RS18150	0.12	-1.5
3,909,480	-		DZA65_RS18150	0.12	-0.7
3,909,480	-		DZA65_RS18150	0.12	-1.1
3,909,480	-		DZA65_RS18150	0.12	+0.0
3,909,480	-		DZA65_RS18150	0.12	-2.3
3,909,480	-		DZA65_RS18150	0.12	+0.1
3,909,480	-				+0.2
3,909,480	-		DZA65_RS18150	0.12	-0.7
3,909,480	-		DZA65_RS18150	0.12	+0.5
3,909,480	-		DZA65_RS18150	0.12	-0.4
3,909,480	-		DZA65_RS18150	0.12	-0.1
3,909,480	-		DZA65_RS18150	0.12	-1.5
3,909,480	-		DZA65_RS18150	0.12	-1.1
3,909,480	-		DZA65_RS18150	0.12	-1.7
3,909,480	-		DZA65_RS18150	0.12	-0.4
3,909,480	-		DZA65_RS18150	0.12	+1.2
3,909,480	-		DZA65_RS18150	0.12	-2.3
3,909,480	-		DZA65_RS18150	0.12	+0.8
3,909,480	-		DZA65_RS18150	0.12	+1.8
3,909,480	-		DZA65_RS18150	0.12	-1.2
3,909,480	-		DZA65_RS18150	0.12	-0.5
3,909,480	-		DZA65_RS18150	0.12	-2.5
3,909,480	-		DZA65_RS18150	0.12	-1.0
3,909,480	-		DZA65_RS18150	0.12	+1.1
3,909,556	+		DZA65_RS18150	0.18	-0.5
3,909,556	+		DZA65_RS18150	0.18	+0.5
3,909,556	+		DZA65_RS18150	0.18	-0.4
3,909,561	+		DZA65_RS18150	0.18	-0.8
3,909,562	-		DZA65_RS18150	0.18	-1.0
3,909,620	+		DZA65_RS18150	0.23	+0.5
3,909,620	+		DZA65_RS18150	0.23	+1.7
3,909,862	-		DZA65_RS18150	0.41	+0.9
3,909,890	+		DZA65_RS18150	0.43	-2.8
3,909,964	+		DZA65_RS18150	0.48	+0.5
3,910,204	+		DZA65_RS18150	0.66	-0.5
3,910,226	+		DZA65_RS18150	0.68	-0.5
3,910,226	+		DZA65_RS18150	0.68	-1.8
3,910,226	+		DZA65_RS18150	0.68	+0.8
3,910,226	+		DZA65_RS18150	0.68	+0.5
3,910,226	+		DZA65_RS18150	0.68	-0.6
3,910,226	+		DZA65_RS18150	0.68	+0.1
3,910,226	+		DZA65_RS18150	0.68	+0.5
3,910,226	+		DZA65_RS18150	0.68	+1.2
3,910,227	-		DZA65_RS18150	0.68	-1.1
3,910,227	-		DZA65_RS18150	0.68	-0.5
3,910,229	+		DZA65_RS18150	0.68	-1.0
3,910,229	+		DZA65_RS18150	0.68	-0.3
3,910,229	+		DZA65_RS18150	0.68	-1.0
3,910,229	+		DZA65_RS18150	0.68	-1.3
3,910,229	+		DZA65_RS18150	0.68	-1.3
3,910,229	+		DZA65_RS18150	0.68	-1.5
3,910,229	+		DZA65_RS18150	0.68	+0.3
3,910,229	+		DZA65_RS18150	0.68	+0.5
3,910,229	+		DZA65_RS18150	0.68	+1.5
3,910,229	+		DZA65_RS18150	0.68	-1.8
3,910,229	+		DZA65_RS18150	0.68	-0.5
3,910,230	-		DZA65_RS18150	0.68	-0.5
3,910,231	+		DZA65_RS18150	0.68	-1.4
3,910,231	+		DZA65_RS18150	0.68	+1.9
3,910,231	+		DZA65_RS18150	0.68	+0.5
3,910,231	+		DZA65_RS18150	0.68	+0.9
3,910,232	-		DZA65_RS18150	0.68	-1.1
3,910,232	-		DZA65_RS18150	0.68	-1.3
3,910,232	-		DZA65_RS18150	0.68	-0.6
3,910,232	-		DZA65_RS18150	0.68	-0.3
3,910,262	+		DZA65_RS18150	0.71	+0.2
3,910,262	+		DZA65_RS18150	0.71	+0.7
3,910,262	+		DZA65_RS18150	0.71	+1.5
3,910,263	-		DZA65_RS18150	0.71	-1.5