Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16760

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,614,331	+		DZA65_RS16755	0.33	-0.1
3,614,371	-		DZA65_RS16755	0.36	-1.0
3,614,371	-		DZA65_RS16755	0.36	-0.6
3,614,755	-		DZA65_RS16755	0.71	-0.6
3,614,815	-		DZA65_RS16755	0.76	+0.1
3,614,815	-		DZA65_RS16755	0.76	+1.3
3,614,815	-		DZA65_RS16755	0.76	-0.6
3,614,825	+		DZA65_RS16755	0.77	-0.7
3,614,838	-		DZA65_RS16755	0.78	+0.7
3,614,838	-		DZA65_RS16755	0.78	-1.1
3,614,846	+		DZA65_RS16755	0.79	-2.1
3,614,846	+		DZA65_RS16755	0.79	+0.3
3,614,855	+		DZA65_RS16755	0.80	-1.4
3,614,856	-		DZA65_RS16755	0.80	+0.9
3,614,856	-		DZA65_RS16755	0.80	-0.5
3,614,856	-		DZA65_RS16755	0.80	-2.1
3,614,933	+		DZA65_RS16755	0.86	-1.1
3,614,933	+		DZA65_RS16755	0.86	+0.2
3,614,933	+		DZA65_RS16755	0.86	-0.6
3,614,934	-		DZA65_RS16755	0.87	+0.1
3,614,968	-		DZA65_RS16755	0.90	+0.3
3,615,057	+				+0.9
3,615,057	+				+0.3
3,615,057	+				-0.8
3,615,057	+				+0.8
3,615,057	+				+0.3
3,615,057	+				-0.6
3,615,058	-				+0.5
3,615,058	-				+1.0
3,615,090	+				-1.3
3,615,091	-				+0.4
3,615,125	+				-0.4
3,615,137	+				-1.5
3,615,137	+				+0.4
3,615,141	+				-0.2
3,615,141	+				+1.7
3,615,142	-				+0.4
3,615,142	-				+0.2
3,615,142	-				-2.5
3,615,142	-				+0.3
3,615,142	-				+1.3
3,615,145	-				-1.4
3,615,145	-				+1.2
3,615,156	+				+0.2
3,615,157	-				-1.1
3,615,176	+				+0.7
3,615,177	-				-1.1
3,615,193	+				+0.2
3,615,193	+				+0.0
3,615,193	+				-0.5
3,615,194	-				+1.0
3,615,203	+				+0.4
3,615,204	-				-1.9
3,615,260	-				-0.6
3,615,313	+				+0.5
3,615,313	+				+1.3
3,615,314	-				-0.2
3,615,314	-				+0.0
3,615,336	+				-0.1
3,615,337	-				+0.0
3,615,337	-				-0.3
3,615,440	+		DZA65_RS16760	0.15	+0.8
3,615,440	+		DZA65_RS16760	0.15	+1.7
3,615,441	-		DZA65_RS16760	0.15	+0.4
3,615,441	-		DZA65_RS16760	0.15	-0.4
3,615,441	-		DZA65_RS16760	0.15	+0.4
3,615,441	-		DZA65_RS16760	0.15	+1.3
3,615,548	+		DZA65_RS16760	0.25	+0.1
3,615,548	+		DZA65_RS16760	0.25	+0.9
3,615,548	+		DZA65_RS16760	0.25	-0.9
3,615,548	+		DZA65_RS16760	0.25	-0.6
3,615,548	+		DZA65_RS16760	0.25	-0.6
3,615,548	+		DZA65_RS16760	0.25	+0.3
3,615,548	+		DZA65_RS16760	0.25	+0.6
3,615,549	-		DZA65_RS16760	0.25	+0.3
3,615,549	-		DZA65_RS16760	0.25	+0.9
3,615,549	-		DZA65_RS16760	0.25	+0.2
3,615,549	-		DZA65_RS16760	0.25	+0.4
3,615,549	-		DZA65_RS16760	0.25	+0.5
3,615,549	-		DZA65_RS16760	0.25	+0.1
3,615,549	-		DZA65_RS16760	0.25	+0.7
3,615,549	-		DZA65_RS16760	0.25	-1.5
3,615,582	-		DZA65_RS16760	0.29	+0.6
3,615,719	+		DZA65_RS16760	0.42	+0.6
3,615,719	+		DZA65_RS16760	0.42	-0.2
3,615,719	+		DZA65_RS16760	0.42	-0.6
3,615,719	+		DZA65_RS16760	0.42	-0.1
3,615,719	+		DZA65_RS16760	0.42	+0.1
3,615,720	-		DZA65_RS16760	0.42	-0.8
3,615,720	-		DZA65_RS16760	0.42	+0.2
3,615,720	-		DZA65_RS16760	0.42	+0.9
3,615,720	-		DZA65_RS16760	0.42	+1.0
3,615,720	-		DZA65_RS16760	0.42	-0.7
3,615,720	-		DZA65_RS16760	0.42	-1.9
3,615,720	-		DZA65_RS16760	0.42	+0.6
3,615,720	-		DZA65_RS16760	0.42	-0.2
3,615,720	-		DZA65_RS16760	0.42	+0.9
3,615,720	-		DZA65_RS16760	0.42	-0.3
3,615,797	-		DZA65_RS16760	0.49	-0.3
3,615,888	+		DZA65_RS16760	0.58	+0.8
3,615,888	+		DZA65_RS16760	0.58	+1.1
3,615,888	+		DZA65_RS16760	0.58	+0.9
3,615,889	-		DZA65_RS16760	0.58	+0.8
3,615,889	-		DZA65_RS16760	0.58	+1.1
3,616,035	+		DZA65_RS16760	0.72	-0.2
3,616,035	+		DZA65_RS16760	0.72	-1.1
3,616,035	+		DZA65_RS16760	0.72	-0.2
3,616,035	+		DZA65_RS16760	0.72	+0.4
3,616,035	+		DZA65_RS16760	0.72	+0.9
3,616,035	+		DZA65_RS16760	0.72	+0.1
3,616,035	+				+1.1
3,616,035	+		DZA65_RS16760	0.72	-1.7
3,616,036	-		DZA65_RS16760	0.72	-0.7
3,616,036	-		DZA65_RS16760	0.72	-1.6
3,616,036	-		DZA65_RS16760	0.72	-0.4
3,616,036	-		DZA65_RS16760	0.72	+0.9
3,616,090	-		DZA65_RS16760	0.77	+1.0
3,616,238	+				+1.3
3,616,259	+				+1.7
3,616,290	+				+1.0
3,616,406	+		DZA65_RS16765	0.14	-1.1
3,616,406	+		DZA65_RS16765	0.14	-0.8
3,616,406	+		DZA65_RS16765	0.14	+1.7
3,616,406	+		DZA65_RS16765	0.14	+2.0
3,616,406	+		DZA65_RS16765	0.14	+0.6
3,616,406	+		DZA65_RS16765	0.14	+0.6
3,616,406	+		DZA65_RS16765	0.14	+0.1
3,616,406	+		DZA65_RS16765	0.14	-1.1
3,616,407	-		DZA65_RS16765	0.14	+1.0
3,616,452	+		DZA65_RS16765	0.21	-1.1
3,616,452	+		DZA65_RS16765	0.21	+0.2
3,616,453	-		DZA65_RS16765	0.21	+0.5
3,616,502	+		DZA65_RS16765	0.28	+0.6
3,616,502	+		DZA65_RS16765	0.28	-0.1
3,616,502	+		DZA65_RS16765	0.28	-0.3
3,616,502	+		DZA65_RS16765	0.28	+0.3
3,616,502	+		DZA65_RS16765	0.28	-0.9
3,616,502	+		DZA65_RS16765	0.28	+0.4
3,616,502	+		DZA65_RS16765	0.28	-0.4
3,616,503	-		DZA65_RS16765	0.28	-1.9
3,616,503	-		DZA65_RS16765	0.28	+0.8
3,616,503	-		DZA65_RS16765	0.28	-0.1
3,616,503	-				-0.9
3,616,509	+		DZA65_RS16765	0.29	-0.4
3,616,509	+		DZA65_RS16765	0.29	-1.6
3,616,509	+		DZA65_RS16765	0.29	-0.1
3,616,509	+		DZA65_RS16765	0.29	+0.0
3,616,509	+		DZA65_RS16765	0.29	-0.6
3,616,510	-		DZA65_RS16765	0.29	-1.6
3,616,510	-		DZA65_RS16765	0.29	+0.4
3,616,510	-		DZA65_RS16765	0.29	+0.7
3,616,510	-		DZA65_RS16765	0.29	+0.6
3,616,510	-		DZA65_RS16765	0.29	+0.1
3,616,510	-		DZA65_RS16765	0.29	-0.1
3,616,520	+		DZA65_RS16765	0.31	+0.4
3,616,520	+		DZA65_RS16765	0.31	+0.6
3,616,520	+		DZA65_RS16765	0.31	+0.8
3,616,520	+		DZA65_RS16765	0.31	+0.6
3,616,520	+		DZA65_RS16765	0.31	+1.3
3,616,521	-		DZA65_RS16765	0.31	+0.9
3,616,521	-		DZA65_RS16765	0.31	-0.4
3,616,521	-		DZA65_RS16765	0.31	-1.3
3,616,532	+		DZA65_RS16765	0.33	+0.2
3,616,532	+		DZA65_RS16765	0.33	-0.6
3,616,532	+		DZA65_RS16765	0.33	-0.7
3,616,532	+		DZA65_RS16765	0.33	-0.2
3,616,532	+		DZA65_RS16765	0.33	+0.0
3,616,532	+		DZA65_RS16765	0.33	+0.4
3,616,532	+		DZA65_RS16765	0.33	+0.0
3,616,533	-		DZA65_RS16765	0.33	-0.9
3,616,533	-		DZA65_RS16765	0.33	-0.2
3,616,533	-		DZA65_RS16765	0.33	+0.7
3,616,588	+		DZA65_RS16765	0.41	-0.2
3,616,588	+		DZA65_RS16765	0.41	-1.1
3,616,589	-		DZA65_RS16765	0.41	-0.9
3,616,589	-		DZA65_RS16765	0.41	-3.1
3,616,631	+		DZA65_RS16765	0.48	-2.2
3,616,632	-		DZA65_RS16765	0.48	-1.1
3,616,632	-		DZA65_RS16765	0.48	+0.4
3,616,652	+		DZA65_RS16765	0.51	-1.4
3,616,653	-		DZA65_RS16765	0.51	+0.2
3,616,653	-		DZA65_RS16765	0.51	+0.8
3,616,691	+		DZA65_RS16765	0.57	+1.2
3,616,692	-		DZA65_RS16765	0.57	-0.3
3,616,776	-		DZA65_RS16765	0.70	-0.4
3,616,776	-		DZA65_RS16765	0.70	-0.1
3,616,794	+		DZA65_RS16765	0.72	-0.3
3,616,794	+		DZA65_RS16765	0.72	-1.0
3,616,795	-		DZA65_RS16765	0.72	+1.0
3,616,806	+		DZA65_RS16765	0.74	+1.0
3,616,806	+		DZA65_RS16765	0.74	+0.9
3,616,806	+		DZA65_RS16765	0.74	+2.8
3,616,807	-		DZA65_RS16765	0.74	+1.7
3,616,873	-		DZA65_RS16765	0.84	+0.1
3,616,937	-				-3.1
3,616,937	-				+0.4
3,616,966	-				-0.1
3,616,967	+				+1.2
3,616,967	+				-1.9
3,616,968	-				+0.9
3,617,017	+				-0.2
3,617,017	+				-0.1
3,617,017	+				+1.1
3,617,018	-				+0.1
3,617,018	-				+0.1
3,617,020	+				-0.8
3,617,020	+				-2.4
3,617,033	+				-0.0
3,617,034	-				-1.0
3,617,050	-				+0.6
3,617,052	+				+0.1
3,617,053	-				+0.4
3,617,068	-				+1.2
3,617,085	-				+0.1
3,617,085	-				-1.0
3,617,085	-				+1.4
3,617,158	+				+0.2
3,617,159	-				-0.6
3,617,159	-				-0.8
3,617,270	+		DZA65_RS16770	0.17	+0.4
3,617,270	+		DZA65_RS16770	0.17	+0.9
3,617,270	+		DZA65_RS16770	0.17	+0.2
3,617,271	-		DZA65_RS16770	0.17	-0.8
3,617,271	-		DZA65_RS16770	0.17	+0.0
3,617,271	-		DZA65_RS16770	0.17	-0.3
3,617,271	-		DZA65_RS16770	0.17	-0.3
3,617,316	+		DZA65_RS16770	0.21	-0.0
3,617,316	+		DZA65_RS16770	0.21	+0.4
3,617,317	-		DZA65_RS16770	0.21	+0.7
3,617,317	-		DZA65_RS16770	0.21	-1.6