Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16330

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,539,179	-		DZA65_RS16325	0.49	+0.3
3,539,179	-		DZA65_RS16325	0.49	-0.1
3,539,222	+		DZA65_RS16325	0.60	-1.9
3,539,314	-		DZA65_RS16325	0.83	+1.6
3,539,406	+				-0.1
3,539,406	+				-1.5
3,539,407	-				+0.4
3,539,494	-				+0.1
3,539,499	-				+0.6
3,539,537	+				+0.6
3,539,580	+				-1.5
3,539,696	+				+1.4
3,539,800	-				-1.3
3,539,998	+				-0.3
3,540,010	+				-1.0
3,540,011	-				-1.5
3,540,029	+				+0.1
3,540,029	+				-0.4
3,540,029	+				-0.3
3,540,029	+				+2.0
3,540,029	+				+0.3
3,540,030	-				-0.6
3,540,030	-				+0.7
3,540,030	-				-0.4
3,540,030	-				+0.3
3,540,032	-				-0.7
3,540,040	+				-2.2
3,540,040	+				-0.6
3,540,041	-				+0.0
3,540,065	+				+0.3
3,540,083	+				-0.1
3,540,083	+				-0.7
3,540,083	+				-0.6
3,540,083	+				-0.7
3,540,152	+				+1.2
3,540,160	-				-0.6
3,540,211	-				+0.2
3,540,229	+				+0.6
3,540,229	+				+0.0
3,540,230	-				+0.4
3,540,230	-				-1.4
3,540,230	-				-1.0
3,540,230	-				-0.1
3,540,230	-				+0.3
3,540,237	+				+1.9
3,540,237	+				-0.3
3,540,237	+				-0.4
3,540,237	+				+0.7
3,540,237	+				-0.8
3,540,237	+				-0.2
3,540,237	+				-1.6
3,540,238	-				-0.3
3,540,238	-				-0.0
3,540,238	-				+0.1
3,540,238	-				-2.2
3,540,238	-				+0.8
3,540,241	-				-0.4
3,540,241	-				-0.1
3,540,261	+		DZA65_RS16330	0.10	+0.1
3,540,278	-		DZA65_RS16330	0.12	-0.1
3,540,332	-		DZA65_RS16330	0.17	+0.4
3,540,332	-		DZA65_RS16330	0.17	-1.9
3,540,339	+		DZA65_RS16330	0.18	+0.7
3,540,339	+		DZA65_RS16330	0.18	-0.2
3,540,352	+		DZA65_RS16330	0.19	+0.0
3,540,352	+		DZA65_RS16330	0.19	-1.4
3,540,353	-		DZA65_RS16330	0.19	-1.6
3,540,353	-		DZA65_RS16330	0.19	+0.6
3,540,353	-		DZA65_RS16330	0.19	-0.2
3,540,353	-		DZA65_RS16330	0.19	-0.4
3,540,353	-		DZA65_RS16330	0.19	-0.3
3,540,356	+		DZA65_RS16330	0.19	-0.2
3,540,357	-		DZA65_RS16330	0.20	+1.0
3,540,428	+		DZA65_RS16330	0.26	-0.5
3,540,428	+		DZA65_RS16330	0.26	-0.5
3,540,428	+		DZA65_RS16330	0.26	-2.9
3,540,429	-				+0.8
3,540,429	-		DZA65_RS16330	0.26	-0.2
3,540,429	-		DZA65_RS16330	0.26	-0.2
3,540,429	-		DZA65_RS16330	0.26	-1.2
3,540,452	+		DZA65_RS16330	0.29	-0.2
3,540,472	+		DZA65_RS16330	0.30	-1.2
3,540,472	+		DZA65_RS16330	0.30	+0.7
3,540,473	-		DZA65_RS16330	0.31	-0.4
3,540,477	+		DZA65_RS16330	0.31	+0.2
3,540,477	+		DZA65_RS16330	0.31	+0.3
3,540,477	+		DZA65_RS16330	0.31	-0.7
3,540,477	+		DZA65_RS16330	0.31	-2.0
3,540,478	-		DZA65_RS16330	0.31	+0.2
3,540,478	-		DZA65_RS16330	0.31	-0.6
3,540,478	-		DZA65_RS16330	0.31	-1.6
3,540,478	-		DZA65_RS16330	0.31	+0.4
3,540,481	-		DZA65_RS16330	0.31	-2.0
3,540,481	-		DZA65_RS16330	0.31	-0.4
3,540,481	-		DZA65_RS16330	0.31	-0.6
3,540,496	+		DZA65_RS16330	0.33	+0.4
3,540,496	+		DZA65_RS16330	0.33	-0.6
3,540,496	+		DZA65_RS16330	0.33	+0.7
3,540,497	-		DZA65_RS16330	0.33	+0.4
3,540,497	-		DZA65_RS16330	0.33	-0.4
3,540,497	-		DZA65_RS16330	0.33	+1.1
3,540,531	+		DZA65_RS16330	0.36	-1.6
3,540,531	+		DZA65_RS16330	0.36	+0.3
3,540,531	+		DZA65_RS16330	0.36	-0.6
3,540,532	-		DZA65_RS16330	0.36	-1.0
3,540,532	-		DZA65_RS16330	0.36	-0.0
3,540,532	-		DZA65_RS16330	0.36	+0.4
3,540,598	+		DZA65_RS16330	0.42	-0.5
3,540,598	+		DZA65_RS16330	0.42	-0.4
3,540,598	+		DZA65_RS16330	0.42	-1.5
3,540,599	-		DZA65_RS16330	0.43	-0.2
3,540,611	+		DZA65_RS16330	0.44	+0.3
3,540,611	+		DZA65_RS16330	0.44	-0.3
3,540,611	+		DZA65_RS16330	0.44	-0.9
3,540,611	+		DZA65_RS16330	0.44	-0.6
3,540,611	+		DZA65_RS16330	0.44	+1.4
3,540,611	+		DZA65_RS16330	0.44	-0.1
3,540,612	-		DZA65_RS16330	0.44	+0.8
3,540,666	+		DZA65_RS16330	0.49	-1.7
3,540,666	+		DZA65_RS16330	0.49	+0.4
3,540,666	+		DZA65_RS16330	0.49	+1.0
3,540,667	-		DZA65_RS16330	0.49	-0.9
3,540,667	-		DZA65_RS16330	0.49	+0.3
3,540,667	-		DZA65_RS16330	0.49	+3.2
3,540,785	-		DZA65_RS16330	0.60	-0.6
3,540,785	-		DZA65_RS16330	0.60	-0.8
3,540,785	-		DZA65_RS16330	0.60	-0.6
3,540,885	+		DZA65_RS16330	0.70	+0.2
3,540,885	+		DZA65_RS16330	0.70	+1.3
3,540,885	+		DZA65_RS16330	0.70	-2.2
3,540,885	+		DZA65_RS16330	0.70	-1.0
3,540,885	+		DZA65_RS16330	0.70	+0.7
3,540,886	-		DZA65_RS16330	0.70	+0.6
3,540,886	-		DZA65_RS16330	0.70	+0.6
3,540,886	-		DZA65_RS16330	0.70	-0.1
3,540,888	+		DZA65_RS16330	0.70	-0.5
3,540,888	+		DZA65_RS16330	0.70	-2.2
3,540,888	+		DZA65_RS16330	0.70	+0.6
3,540,888	+		DZA65_RS16330	0.70	-3.0
3,540,888	+		DZA65_RS16330	0.70	-0.7
3,540,888	+		DZA65_RS16330	0.70	-2.6
3,540,889	-		DZA65_RS16330	0.70	+0.1
3,540,889	-		DZA65_RS16330	0.70	-1.7
3,540,937	-		DZA65_RS16330	0.75	-0.8
3,540,958	+		DZA65_RS16330	0.77	-0.2
3,540,958	+		DZA65_RS16330	0.77	+0.0
3,540,958	+		DZA65_RS16330	0.77	-1.3
3,540,958	+		DZA65_RS16330	0.77	-0.8
3,540,958	+		DZA65_RS16330	0.77	-0.2
3,540,958	+		DZA65_RS16330	0.77	+0.4
3,540,958	+		DZA65_RS16330	0.77	+0.4
3,540,958	+		DZA65_RS16330	0.77	-1.2
3,540,958	+		DZA65_RS16330	0.77	-0.6
3,540,958	+		DZA65_RS16330	0.77	+2.2
3,540,958	+		DZA65_RS16330	0.77	-0.3
3,540,959	-		DZA65_RS16330	0.77	-1.9
3,540,959	-		DZA65_RS16330	0.77	-0.1
3,540,959	-		DZA65_RS16330	0.77	+0.2
3,540,962	+		DZA65_RS16330	0.77	-0.6
3,540,962	+		DZA65_RS16330	0.77	-2.0
3,540,962	+		DZA65_RS16330	0.77	-2.9
3,540,962	+		DZA65_RS16330	0.77	-1.9
3,540,962	+		DZA65_RS16330	0.77	-0.1
3,540,963	-		DZA65_RS16330	0.77	+0.0
3,540,963	-		DZA65_RS16330	0.77	-0.3
3,540,963	-		DZA65_RS16330	0.77	-0.7
3,540,963	-		DZA65_RS16330	0.77	+1.8
3,540,963	-		DZA65_RS16330	0.77	-0.2
3,541,010	-		DZA65_RS16330	0.82	+0.3
3,541,012	+		DZA65_RS16330	0.82	+0.6
3,541,012	+		DZA65_RS16330	0.82	-0.0
3,541,027	+		DZA65_RS16330	0.83	-0.4
3,541,028	-		DZA65_RS16330	0.83	+0.4
3,541,028	-		DZA65_RS16330	0.83	-0.2
3,541,028	-		DZA65_RS16330	0.83	+1.2
3,541,070	+		DZA65_RS16330	0.87	+0.5
3,541,071	-		DZA65_RS16330	0.87	+1.0
3,541,073	+		DZA65_RS16330	0.88	-0.5
3,541,074	-		DZA65_RS16330	0.88	-0.3
3,541,092	+		DZA65_RS16330	0.89	+0.4
3,541,092	+				-0.2
3,541,092	+		DZA65_RS16330	0.89	-0.6
3,541,092	+		DZA65_RS16330	0.89	+0.8
3,541,144	-				+0.8
3,541,144	-				-1.6
3,541,144	-				+0.1
3,541,159	+				-0.6
3,541,159	+				-0.4
3,541,160	-				+0.2
3,541,165	-				-0.3
3,541,206	+				+0.1
3,541,219	+				-1.3
3,541,219	+				-0.6
3,541,220	-				+0.2
3,541,225	+				-0.1
3,541,226	-				+0.0
3,541,228	+				-1.9
3,541,228	+				-0.6
3,541,228	+				+0.0
3,541,228	+				+1.6
3,541,228	+				+0.4
3,541,229	-				-0.2
3,541,229	-				+1.2
3,541,229	-				-0.3
3,541,233	+				-2.7
3,541,233	+				+0.0
3,541,233	+				+0.8
3,541,233	+				+0.8
3,541,233	+				-2.7
3,541,234	-				-2.9
3,541,234	-				+0.2
3,541,234	-				-1.2
3,541,234	-				-0.8
3,541,237	+				-1.0
3,541,238	-				+0.4
3,541,260	+				+1.0
3,541,266	+				-0.2
3,541,266	+				-0.6
3,541,284	+				+0.2
3,541,284	+				-1.2
3,541,307	+				+0.2
3,541,307	+				-0.3
3,541,319	+				+1.1
3,541,319	+				+0.6
3,541,319	+				+4.0
3,541,320	-				+1.2
3,541,337	-				-0.2
3,541,399	+				-0.2
3,541,399	+				-0.6
3,541,399	+				-0.9
3,541,400	-				-0.6
3,541,400	-				-0.8
3,541,400	-				-1.0
3,541,403	-				+1.0
3,541,403	-				+0.4
3,541,417	+		DZA65_RS16335	0.11	-0.6
3,541,417	+		DZA65_RS16335	0.11	+0.4
3,541,418	-		DZA65_RS16335	0.11	-0.6
3,541,418	-		DZA65_RS16335	0.11	-0.7
3,541,448	+		DZA65_RS16335	0.13	-0.3
3,541,449	-		DZA65_RS16335	0.13	-0.3
3,541,449	-		DZA65_RS16335	0.13	+0.3
3,541,450	+		DZA65_RS16335	0.13	-0.9
3,541,450	+		DZA65_RS16335	0.13	-1.1
3,541,450	+		DZA65_RS16335	0.13	-2.9
3,541,451	-		DZA65_RS16335	0.13	-2.6
3,541,451	-		DZA65_RS16335	0.13	-2.2
3,541,505	+		DZA65_RS16335	0.18	-0.7
3,541,505	+		DZA65_RS16335	0.18	+1.3
3,541,506	-		DZA65_RS16335	0.18	-1.2
3,541,506	-		DZA65_RS16335	0.18	-0.6
3,541,506	-		DZA65_RS16335	0.18	-0.3
3,541,507	+		DZA65_RS16335	0.18	-0.8
3,541,507	+		DZA65_RS16335	0.18	+0.2
3,541,507	+		DZA65_RS16335	0.18	+1.1
3,541,507	+		DZA65_RS16335	0.18	-1.2
3,541,507	+		DZA65_RS16335	0.18	+0.2
3,541,507	+		DZA65_RS16335	0.18	-2.4
3,541,508	-		DZA65_RS16335	0.18	+1.2
3,541,508	-		DZA65_RS16335	0.18	-0.2
3,541,510	+		DZA65_RS16335	0.18	+0.6
3,541,575	-		DZA65_RS16335	0.23	-0.2
3,541,580	+		DZA65_RS16335	0.23	-0.2
3,541,607	-		DZA65_RS16335	0.25	+1.2
3,541,618	+		DZA65_RS16335	0.26	-0.4
3,541,619	-		DZA65_RS16335	0.26	-1.1
3,541,667	-		DZA65_RS16335	0.30	+0.1
3,541,669	+		DZA65_RS16335	0.30	-0.1
3,541,670	-		DZA65_RS16335	0.30	-1.1
3,541,699	+		DZA65_RS16335	0.32	+0.3
3,541,777	+		DZA65_RS16335	0.38	+0.8
3,541,777	+		DZA65_RS16335	0.38	-0.1
3,541,777	+		DZA65_RS16335	0.38	-0.4
3,541,777	+		DZA65_RS16335	0.38	-0.3
3,541,777	+		DZA65_RS16335	0.38	-1.5
3,541,837	-		DZA65_RS16335	0.43	-0.2
3,541,846	+		DZA65_RS16335	0.44	-1.2
3,541,846	+		DZA65_RS16335	0.44	-0.5
3,541,847	-		DZA65_RS16335	0.44	-0.3
3,541,847	-		DZA65_RS16335	0.44	-0.3
3,541,852	+		DZA65_RS16335	0.44	-0.3
3,541,852	+		DZA65_RS16335	0.44	+0.2
3,541,853	-		DZA65_RS16335	0.44	-0.2
3,541,856	+		DZA65_RS16335	0.44	-0.8
3,541,864	+		DZA65_RS16335	0.45	-1.6
3,541,891	+		DZA65_RS16335	0.47	-2.2
3,541,897	+		DZA65_RS16335	0.47	+0.5
3,541,897	+		DZA65_RS16335	0.47	+0.4
3,541,915	-		DZA65_RS16335	0.49	-0.6
3,541,933	+		DZA65_RS16335	0.50	+0.2
3,541,934	-		DZA65_RS16335	0.50	-1.3
3,541,934	-		DZA65_RS16335	0.50	-0.5
3,541,934	-		DZA65_RS16335	0.50	+1.7
3,541,963	+		DZA65_RS16335	0.52	+0.1
3,541,963	+		DZA65_RS16335	0.52	-0.5
3,541,963	+		DZA65_RS16335	0.52	+1.2
3,541,963	+		DZA65_RS16335	0.52	-0.4
3,541,963	+		DZA65_RS16335	0.52	+0.4
3,541,963	+		DZA65_RS16335	0.52	-0.3
3,542,001	+		DZA65_RS16335	0.55	-0.6
3,542,001	+		DZA65_RS16335	0.55	+1.0
3,542,002	-		DZA65_RS16335	0.55	-1.0
3,542,009	-		DZA65_RS16335	0.56	-1.6
3,542,014	+		DZA65_RS16335	0.56	-1.4
3,542,015	-		DZA65_RS16335	0.56	-0.2
3,542,020	+		DZA65_RS16335	0.57	-0.7
3,542,025	+		DZA65_RS16335	0.57	-0.6
3,542,025	+		DZA65_RS16335	0.57	+1.3
3,542,025	+		DZA65_RS16335	0.57	-2.7
3,542,025	+		DZA65_RS16335	0.57	-0.4
3,542,025	+		DZA65_RS16335	0.57	-1.2
3,542,025	+		DZA65_RS16335	0.57	-0.7
3,542,025	+		DZA65_RS16335	0.57	-1.0
3,542,026	-		DZA65_RS16335	0.57	+0.2
3,542,026	-		DZA65_RS16335	0.57	+0.3
3,542,026	-		DZA65_RS16335	0.57	-0.6
3,542,026	-		DZA65_RS16335	0.57	+0.0
3,542,026	-		DZA65_RS16335	0.57	-0.1
3,542,026	-		DZA65_RS16335	0.57	-0.6
3,542,033	+		DZA65_RS16335	0.58	-2.7
3,542,034	-		DZA65_RS16335	0.58	-0.9
3,542,034	-		DZA65_RS16335	0.58	-0.2
3,542,034	-		DZA65_RS16335	0.58	-0.2
3,542,058	-		DZA65_RS16335	0.60	+0.6
3,542,078	+		DZA65_RS16335	0.61	+0.4
3,542,078	+		DZA65_RS16335	0.61	-0.8
3,542,078	+		DZA65_RS16335	0.61	-1.2
3,542,079	-		DZA65_RS16335	0.61	-0.2
3,542,081	+		DZA65_RS16335	0.61	-0.4
3,542,112	+		DZA65_RS16335	0.64	+0.0
3,542,113	-		DZA65_RS16335	0.64	+1.4
3,542,113	-		DZA65_RS16335	0.64	+0.7
3,542,113	-		DZA65_RS16335	0.64	-0.7
3,542,113	-		DZA65_RS16335	0.64	-0.2
3,542,127	-		DZA65_RS16335	0.65	-1.1
3,542,148	+		DZA65_RS16335	0.67	-1.6
3,542,153	+		DZA65_RS16335	0.67	-0.2