Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16140

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,494,562	-				-1.0
3,494,576	-				+0.8
3,494,588	+				+1.0
3,494,593	+				-0.6
3,494,593	+				-0.5
3,494,593	+				+0.3
3,494,593	+				-1.0
3,494,593	+				-1.4
3,494,593	+				-2.0
3,494,593	+				-1.0
3,494,593	+				+0.6
3,494,594	-				-0.6
3,494,594	-				-1.3
3,494,594	-				+0.4
3,494,594	-				+0.9
3,494,594	-				+0.8
3,494,594	-				-0.7
3,494,594	-				+0.8
3,494,626	+				+0.0
3,494,627	-				+0.4
3,494,703	+				-1.6
3,494,703	+				-1.8
3,494,704	-				+0.4
3,494,707	+				-1.2
3,494,707	+				-2.0
3,494,707	+				-0.9
3,494,708	-				-1.2
3,494,708	-				+1.3
3,494,708	-				+0.1
3,494,708	-				-0.7
3,494,708	-				+0.8
3,494,837	-		DZA65_RS16135	0.21	-0.4
3,494,869	+		DZA65_RS16135	0.27	+0.7
3,494,870	-		DZA65_RS16135	0.27	-0.2
3,494,870	-		DZA65_RS16135	0.27	-1.2
3,494,874	+		DZA65_RS16135	0.27	+0.8
3,494,874	+		DZA65_RS16135	0.27	+0.6
3,494,875	-		DZA65_RS16135	0.27	-1.8
3,494,912	-		DZA65_RS16135	0.33	+0.7
3,494,917	+		DZA65_RS16135	0.34	-0.0
3,494,917	+		DZA65_RS16135	0.34	+0.4
3,494,917	+		DZA65_RS16135	0.34	-2.4
3,494,917	+		DZA65_RS16135	0.34	-2.3
3,494,917	+		DZA65_RS16135	0.34	-0.5
3,494,918	-		DZA65_RS16135	0.34	-1.4
3,494,918	-		DZA65_RS16135	0.34	-0.6
3,495,004	+		DZA65_RS16135	0.48	+0.4
3,495,005	-		DZA65_RS16135	0.48	-0.3
3,495,088	-		DZA65_RS16135	0.61	+0.0
3,495,088	-		DZA65_RS16135	0.61	-0.0
3,495,088	-		DZA65_RS16135	0.61	-0.4
3,495,088	-		DZA65_RS16135	0.61	-0.5
3,495,088	-		DZA65_RS16135	0.61	-0.2
3,495,090	+		DZA65_RS16135	0.62	-0.7
3,495,090	+		DZA65_RS16135	0.62	+0.1
3,495,090	+		DZA65_RS16135	0.62	+0.4
3,495,090	+		DZA65_RS16135	0.62	-1.1
3,495,090	+		DZA65_RS16135	0.62	+1.0
3,495,090	+		DZA65_RS16135	0.62	-0.9
3,495,090	+		DZA65_RS16135	0.62	-0.6
3,495,091	-		DZA65_RS16135	0.62	+0.8
3,495,091	-		DZA65_RS16135	0.62	-0.8
3,495,121	+		DZA65_RS16135	0.67	+0.4
3,495,121	+		DZA65_RS16135	0.67	-0.4
3,495,122	-		DZA65_RS16135	0.67	-0.3
3,495,123	+		DZA65_RS16135	0.67	+2.0
3,495,123	+		DZA65_RS16135	0.67	-0.8
3,495,124	-		DZA65_RS16135	0.67	-0.4
3,495,124	-		DZA65_RS16135	0.67	-1.4
3,495,124	-		DZA65_RS16135	0.67	-1.9
3,495,166	+		DZA65_RS16135	0.74	+0.1
3,495,167	-		DZA65_RS16135	0.74	+1.1
3,495,167	-		DZA65_RS16135	0.74	+0.1
3,495,168	+		DZA65_RS16135	0.74	+0.2
3,495,168	+		DZA65_RS16135	0.74	-0.2
3,495,168	+		DZA65_RS16135	0.74	+1.0
3,495,169	-		DZA65_RS16135	0.74	-0.1
3,495,169	-		DZA65_RS16135	0.74	+0.4
3,495,169	-		DZA65_RS16135	0.74	-0.1
3,495,186	+		DZA65_RS16135	0.77	-1.9
3,495,186	+		DZA65_RS16135	0.77	+0.6
3,495,186	+		DZA65_RS16135	0.77	+1.6
3,495,187	-		DZA65_RS16135	0.77	-0.4
3,495,187	-		DZA65_RS16135	0.77	+0.4
3,495,187	-		DZA65_RS16135	0.77	+0.8
3,495,206	+		DZA65_RS16135	0.80	-0.9
3,495,241	-		DZA65_RS16135	0.86	-1.0
3,495,241	-		DZA65_RS16135	0.86	+2.3
3,495,268	+		DZA65_RS16135	0.90	+0.1
3,495,269	-				-0.5
3,495,320	+				+0.3
3,495,321	-				+0.1
3,495,321	-				+0.9
3,495,332	+				-0.6
3,495,346	-				-0.8
3,495,381	+				+0.6
3,495,453	+				+0.4
3,495,453	+				+0.3
3,495,453	+				-0.2
3,495,453	+				-0.9
3,495,453	+				-0.3
3,495,453	+				-0.1
3,495,453	+				+1.6
3,495,453	+				+0.0
3,495,453	+				-1.0
3,495,454	-				+0.1
3,495,454	-				+0.5
3,495,454	-				-0.0
3,495,454	-				+0.1
3,495,454	-				+0.9
3,495,454	-				+0.7
3,495,454	-				-0.7
3,495,541	+				-2.2
3,495,541	+				+0.1
3,495,542	-				+1.4
3,495,656	+		DZA65_RS16140	0.21	-1.2
3,495,657	-		DZA65_RS16140	0.21	-0.4
3,495,821	-		DZA65_RS16140	0.55	-0.8
3,495,861	+		DZA65_RS16140	0.63	+0.1
3,495,861	+		DZA65_RS16140	0.63	-0.6
3,495,871	+		DZA65_RS16140	0.65	+0.1
3,495,875	+		DZA65_RS16140	0.65	-0.9
3,495,876	-		DZA65_RS16140	0.66	-1.2
3,495,876	-		DZA65_RS16140	0.66	+0.4
3,495,876	-		DZA65_RS16140	0.66	+1.5
3,495,876	-		DZA65_RS16140	0.66	-0.3
3,495,886	-		DZA65_RS16140	0.68	-0.6
3,495,886	-		DZA65_RS16140	0.68	+1.2
3,495,886	-		DZA65_RS16140	0.68	+0.4
3,495,886	-		DZA65_RS16140	0.68	-0.9
3,495,958	+		DZA65_RS16140	0.82	+0.1
3,495,958	+		DZA65_RS16140	0.82	-0.4
3,495,959	-		DZA65_RS16140	0.82	-0.6
3,495,959	-		DZA65_RS16140	0.82	+1.3
3,495,959	-		DZA65_RS16140	0.82	-0.8
3,495,959	-		DZA65_RS16140	0.82	+1.3
3,495,962	+		DZA65_RS16140	0.83	-0.2
3,495,963	-		DZA65_RS16140	0.83	+1.4
3,495,963	-		DZA65_RS16140	0.83	-0.1
3,495,971	-		DZA65_RS16140	0.85	+0.9
3,495,971	-		DZA65_RS16140	0.85	+1.4
3,495,971	-		DZA65_RS16140	0.85	+0.4
3,495,971	-		DZA65_RS16140	0.85	-0.3
3,495,997	+				-0.9
3,496,017	+				-0.3
3,496,043	+				+0.2
3,496,044	-				-2.2
3,496,044	-				-0.3
3,496,044	-				-0.4
3,496,054	+				-0.1
3,496,055	-				-0.9
3,496,076	+				+0.4
3,496,076	+				-0.4
3,496,077	-				-0.2
3,496,077	-				-2.2
3,496,077	-				-0.3
3,496,120	+				+1.2
3,496,121	-				+0.4
3,496,130	+				-0.5
3,496,130	+				-1.3
3,496,130	+				-0.9
3,496,130	+				-1.1
3,496,130	+				-0.2
3,496,130	+				+0.2
3,496,131	-				-0.6
3,496,131	-				+0.7
3,496,131	-				-0.1
3,496,133	+				+0.4
3,496,133	+				+0.1
3,496,133	+				-0.6
3,496,133	+				-0.6
3,496,133	+				+0.8
3,496,134	-				+0.1
3,496,134	-				+0.7
3,496,136	+				-0.2
3,496,137	-				-0.1
3,496,137	-				-0.9
3,496,175	+				-0.6
3,496,175	+				+1.5
3,496,175	+				+1.6
3,496,185	+				-1.8
3,496,185	+				-0.6
3,496,186	-				-0.2
3,496,186	-				-0.2
3,496,189	+				+0.1
3,496,189	+				-0.2
3,496,190	-				+1.7
3,496,190	-				+0.2
3,496,190	-				-1.2
3,496,231	+				+0.1
3,496,231	+				+0.9
3,496,231	+				+2.4
3,496,231	+				+0.3
3,496,231	+				-0.5
3,496,232	-				-0.2
3,496,232	-				-0.4
3,496,232	-				-1.2
3,496,232	-				-1.2
3,496,232	-				+0.2
3,496,232	-				-0.3
3,496,232	-				-1.2
3,496,256	+				-1.0
3,496,256	+				+1.4
3,496,263	+				+0.4
3,496,311	+				-1.3
3,496,311	+				-1.6
3,496,311	+				+1.7
3,496,311	+				-0.5
3,496,311	+				+1.4
3,496,311	+				+0.4
3,496,315	+				+0.8
3,496,316	-				-1.2
3,496,329	+				-0.5
3,496,329	+				+0.8
3,496,668	-		DZA65_RS16145	0.24	-1.6