Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15660

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,400,277	+		DZA65_RS15650	0.21	+0.9
3,400,277	+		DZA65_RS15650	0.21	+2.2
3,400,329	+		DZA65_RS15650	0.28	+1.1
3,400,344	+		DZA65_RS15650	0.30	+0.9
3,400,344	+		DZA65_RS15650	0.30	-0.8
3,400,344	+		DZA65_RS15650	0.30	-0.2
3,400,345	-		DZA65_RS15650	0.30	-1.9
3,400,345	-		DZA65_RS15650	0.30	+1.0
3,400,411	+		DZA65_RS15650	0.39	-0.2
3,400,411	+		DZA65_RS15650	0.39	-0.1
3,400,411	+		DZA65_RS15650	0.39	-0.3
3,400,412	-		DZA65_RS15650	0.39	+0.1
3,400,412	-		DZA65_RS15650	0.39	-2.8
3,400,412	-		DZA65_RS15650	0.39	+1.1
3,400,412	-		DZA65_RS15650	0.39	+0.4
3,400,412	-		DZA65_RS15650	0.39	-1.2
3,400,433	-		DZA65_RS15650	0.42	-0.6
3,400,444	+		DZA65_RS15650	0.43	+1.5
3,400,445	-		DZA65_RS15650	0.43	-0.3
3,400,484	+		DZA65_RS15650	0.49	+1.7
3,400,484	+		DZA65_RS15650	0.49	+0.0
3,400,485	-		DZA65_RS15650	0.49	-1.2
3,400,551	+		DZA65_RS15650	0.58	-0.8
3,400,551	+		DZA65_RS15650	0.58	+0.4
3,400,552	-		DZA65_RS15650	0.58	-1.2
3,400,552	-		DZA65_RS15650	0.58	+0.7
3,400,612	+		DZA65_RS15650	0.66	-0.6
3,400,612	+		DZA65_RS15650	0.66	-0.1
3,400,612	+		DZA65_RS15650	0.66	-1.9
3,400,612	+		DZA65_RS15650	0.66	-0.0
3,400,612	+		DZA65_RS15650	0.66	+0.2
3,400,612	+		DZA65_RS15650	0.66	-1.4
3,400,613	-		DZA65_RS15650	0.66	+1.0
3,400,613	-		DZA65_RS15650	0.66	+0.5
3,400,613	-		DZA65_RS15650	0.66	+0.1
3,400,613	-		DZA65_RS15650	0.66	+0.1
3,400,613	-		DZA65_RS15650	0.66	+1.1
3,400,613	-		DZA65_RS15650	0.66	+0.1
3,400,613	-		DZA65_RS15650	0.66	+0.9
3,400,631	+		DZA65_RS15650	0.69	+1.6
3,400,646	+		DZA65_RS15650	0.71	-1.7
3,400,647	-		DZA65_RS15650	0.71	+0.3
3,400,839	+				+3.2
3,400,840	-				-0.5
3,400,903	-		DZA65_RS15655	0.11	-0.9
3,400,950	+		DZA65_RS15655	0.24	+0.3
3,400,950	+		DZA65_RS15655	0.24	-2.4
3,400,951	-		DZA65_RS15655	0.24	+0.0
3,400,992	-		DZA65_RS15655	0.35	+0.2
3,400,992	-		DZA65_RS15655	0.35	-0.4
3,401,021	+		DZA65_RS15655	0.43	-0.8
3,401,022	-		DZA65_RS15655	0.43	-0.8
3,401,022	-		DZA65_RS15655	0.43	+0.3
3,401,242	+				-0.2
3,401,242	+				-0.1
3,401,243	-				-0.3
3,401,280	-				+0.4
3,401,283	-				+0.6
3,401,306	+		DZA65_RS15660	0.12	+0.1
3,401,307	-		DZA65_RS15660	0.12	-0.7
3,401,307	-		DZA65_RS15660	0.12	+0.5
3,401,315	+		DZA65_RS15660	0.14	+0.5
3,401,316	-		DZA65_RS15660	0.14	-0.1
3,401,426	+		DZA65_RS15660	0.34	+0.4
3,401,426	+		DZA65_RS15660	0.34	+0.4
3,401,426	+		DZA65_RS15660	0.34	+1.4
3,401,426	+		DZA65_RS15660	0.34	-0.1
3,401,493	+		DZA65_RS15660	0.47	+1.1
3,401,503	+		DZA65_RS15660	0.49	-0.0
3,401,503	+		DZA65_RS15660	0.49	+1.4
3,401,503	+		DZA65_RS15660	0.49	+0.4
3,401,503	+		DZA65_RS15660	0.49	-0.9
3,401,503	+		DZA65_RS15660	0.49	+0.1
3,401,503	+		DZA65_RS15660	0.49	-0.8
3,401,504	-		DZA65_RS15660	0.49	-0.8
3,401,504	-		DZA65_RS15660	0.49	+1.2
3,401,504	-		DZA65_RS15660	0.49	+1.4
3,401,504	-		DZA65_RS15660	0.49	+0.1
3,401,504	-		DZA65_RS15660	0.49	+0.6
3,401,504	-		DZA65_RS15660	0.49	-1.2
3,401,508	+		DZA65_RS15660	0.49	+0.4
3,401,508	+		DZA65_RS15660	0.49	-0.2
3,401,508	+		DZA65_RS15660	0.49	+0.9
3,401,508	+		DZA65_RS15660	0.49	-1.6
3,401,508	+		DZA65_RS15660	0.49	-0.7
3,401,509	-		DZA65_RS15660	0.50	+1.5
3,401,509	-		DZA65_RS15660	0.50	-0.3
3,401,585	+		DZA65_RS15660	0.64	-0.0
3,401,586	-		DZA65_RS15660	0.64	+0.7
3,401,587	+		DZA65_RS15660	0.64	+1.2
3,401,587	+		DZA65_RS15660	0.64	+0.8
3,401,587	+		DZA65_RS15660	0.64	+1.0
3,401,587	+		DZA65_RS15660	0.64	+0.7
3,401,587	+		DZA65_RS15660	0.64	-0.2
3,401,587	+		DZA65_RS15660	0.64	+1.5
3,401,587	+		DZA65_RS15660	0.64	+0.8
3,401,587	+		DZA65_RS15660	0.64	+0.2
3,401,587	+		DZA65_RS15660	0.64	-0.9
3,401,587	+		DZA65_RS15660	0.64	-1.4
3,401,587	+		DZA65_RS15660	0.64	+0.7
3,401,587	+		DZA65_RS15660	0.64	-0.6
3,401,588	-		DZA65_RS15660	0.64	-0.8
3,401,588	-		DZA65_RS15660	0.64	-2.2
3,401,588	-		DZA65_RS15660	0.64	-1.6
3,401,588	-		DZA65_RS15660	0.64	+0.4
3,401,588	-		DZA65_RS15660	0.64	-0.6
3,401,588	-		DZA65_RS15660	0.64	-0.6
3,401,588	-		DZA65_RS15660	0.64	-1.5
3,401,588	-		DZA65_RS15660	0.64	-2.4
3,401,588	-		DZA65_RS15660	0.64	-0.9
3,401,588	-		DZA65_RS15660	0.64	+0.8
3,401,588	-		DZA65_RS15660	0.64	-1.4
3,401,588	-		DZA65_RS15660	0.64	+2.0
3,401,588	-		DZA65_RS15660	0.64	+0.2
3,401,588	-		DZA65_RS15660	0.64	+0.2
3,401,588	-		DZA65_RS15660	0.64	-0.7
3,401,588	-		DZA65_RS15660	0.64	-0.4
3,401,588	-		DZA65_RS15660	0.64	+1.8
3,401,588	-		DZA65_RS15660	0.64	-0.5
3,401,600	+		DZA65_RS15660	0.66	-1.0
3,401,601	-		DZA65_RS15660	0.67	+0.4
3,401,601	-		DZA65_RS15660	0.67	-0.6
3,401,633	-		DZA65_RS15660	0.73	+1.8
3,401,685	-		DZA65_RS15660	0.82	+1.1
3,401,736	+				-0.4
3,401,762	+				-1.2
3,401,762	+				-0.4
3,401,762	+				-0.6
3,401,762	+				+1.0
3,401,762	+				-0.4
3,401,762	+				-0.9
3,401,762	+				+0.1
3,401,762	+				-0.7
3,401,762	+				+0.4
3,401,763	-				-0.7
3,401,763	-				-0.4
3,401,763	-				+0.2
3,401,763	-				+0.7
3,401,763	-				+0.3
3,401,763	-				-0.7
3,401,763	-				-0.9
3,401,803	+				-0.9
3,401,804	-				-1.9
3,401,806	+				-0.8
3,401,806	+				-0.1
3,401,807	-				-0.3
3,401,842	+		DZA65_RS15665	0.13	-1.6
3,401,883	+		DZA65_RS15665	0.22	-0.4
3,401,884	-		DZA65_RS15665	0.22	-0.2
3,401,897	+		DZA65_RS15665	0.25	+0.1
3,401,897	+		DZA65_RS15665	0.25	+1.0
3,401,897	+		DZA65_RS15665	0.25	-1.0
3,401,897	+		DZA65_RS15665	0.25	-1.2
3,401,897	+		DZA65_RS15665	0.25	-0.1
3,401,898	-		DZA65_RS15665	0.25	-1.6
3,401,898	-		DZA65_RS15665	0.25	+1.1
3,401,898	-		DZA65_RS15665	0.25	-0.9
3,401,898	-		DZA65_RS15665	0.25	-0.0
3,401,898	-		DZA65_RS15665	0.25	-0.6
3,401,932	-		DZA65_RS15665	0.32	+1.4
3,401,932	-		DZA65_RS15665	0.32	-1.0
3,401,968	+		DZA65_RS15665	0.40	+0.0
3,401,969	-		DZA65_RS15665	0.40	-0.6
3,401,969	-		DZA65_RS15665	0.40	+0.2
3,401,969	-		DZA65_RS15665	0.40	+0.2
3,401,970	+		DZA65_RS15665	0.40	-1.2
3,401,970	+		DZA65_RS15665	0.40	+1.4
3,401,970	+		DZA65_RS15665	0.40	-0.3
3,401,970	+		DZA65_RS15665	0.40	-0.2
3,401,970	+		DZA65_RS15665	0.40	-0.2
3,401,970	+		DZA65_RS15665	0.40	+1.0
3,402,075	+		DZA65_RS15665	0.63	-0.6
3,402,075	+		DZA65_RS15665	0.63	+0.2
3,402,075	+		DZA65_RS15665	0.63	-2.2
3,402,075	+		DZA65_RS15665	0.63	+0.1
3,402,075	+		DZA65_RS15665	0.63	-0.9
3,402,075	+		DZA65_RS15665	0.63	-0.6
3,402,075	+		DZA65_RS15665	0.63	+1.1
3,402,075	+		DZA65_RS15665	0.63	+0.9
3,402,075	+		DZA65_RS15665	0.63	-0.8
3,402,075	+		DZA65_RS15665	0.63	-0.1
3,402,075	+		DZA65_RS15665	0.63	-0.8
3,402,076	-		DZA65_RS15665	0.63	+0.0
3,402,076	-		DZA65_RS15665	0.63	-0.6
3,402,076	-		DZA65_RS15665	0.63	-1.4
3,402,076	-		DZA65_RS15665	0.63	-0.9
3,402,076	-		DZA65_RS15665	0.63	-0.0
3,402,076	-		DZA65_RS15665	0.63	-0.1
3,402,076	-		DZA65_RS15665	0.63	+1.5
3,402,076	-		DZA65_RS15665	0.63	+0.5
3,402,076	-		DZA65_RS15665	0.63	-0.4
3,402,076	-		DZA65_RS15665	0.63	+0.4
3,402,076	-		DZA65_RS15665	0.63	-0.6
3,402,076	-		DZA65_RS15665	0.63	-1.9
3,402,076	-		DZA65_RS15665	0.63	-0.9
3,402,079	+		DZA65_RS15665	0.64	-0.0
3,402,079	+		DZA65_RS15665	0.64	-0.5
3,402,079	+		DZA65_RS15665	0.64	+0.8
3,402,104	+		DZA65_RS15665	0.69	-0.0
3,402,104	+		DZA65_RS15665	0.69	+1.6
3,402,105	-		DZA65_RS15665	0.70	-0.5
3,402,105	-		DZA65_RS15665	0.70	+0.2
3,402,105	-		DZA65_RS15665	0.70	-0.0
3,402,105	-		DZA65_RS15665	0.70	-0.4
3,402,179	+		DZA65_RS15665	0.86	-0.6
3,402,220	+				+1.2
3,402,220	+				+0.1
3,402,220	+				+0.4
3,402,221	-				-0.4
3,402,261	+				-1.2
3,402,266	+				-0.8
3,402,266	+				+0.7
3,402,266	+				+0.9
3,402,266	+				+0.1
3,402,266	+				-0.8
3,402,266	+				-1.2
3,402,267	-				-0.4
3,402,267	-				-0.6
3,402,267	-				-0.0
3,402,267	-				-1.3
3,402,267	-				-2.2
3,402,267	-				-1.5
3,402,267	-				+0.0
3,402,267	-				+0.7
3,402,267	-				-0.4
3,402,267	-				-1.2
3,402,279	+				-0.6
3,402,279	+				-1.2
3,402,279	+				+0.4
3,402,280	-				-0.1
3,402,280	-				-1.9
3,402,280	-				+0.4
3,402,280	-				-1.2
3,402,280	-				-0.8
3,402,280	-				-0.6
3,402,283	+				-1.6
3,402,283	+				+0.8
3,402,283	+				-0.2
3,402,283	+				+2.2
3,402,283	+				+0.0
3,402,283	+				+0.1
3,402,283	+				+0.1
3,402,283	+				+0.4
3,402,283	+				-0.0
3,402,283	+				+1.1
3,402,284	-				+0.8
3,402,284	-				+0.5
3,402,284	-				-0.1
3,402,284	-				-0.5
3,402,284	-				-1.4
3,402,284	-				+1.0
3,402,284	-				+0.7
3,402,295	+				+0.7
3,402,329	+				+2.0
3,402,330	-				-0.6
3,402,330	-				-0.4
3,402,619	+		DZA65_RS15670	0.28	-1.1
3,402,619	+		DZA65_RS15670	0.28	-1.9
3,402,620	-		DZA65_RS15670	0.28	-1.2
3,402,678	+		DZA65_RS15670	0.33	+0.5
3,402,691	+		DZA65_RS15670	0.34	-0.6
3,402,692	-		DZA65_RS15670	0.34	-0.3
3,402,692	-		DZA65_RS15670	0.34	+0.4
3,402,706	+		DZA65_RS15670	0.35	+0.2