Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14675

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,189,525	-				+0.1
3,189,550	+				-0.6
3,189,550	+				+0.8
3,189,550	+				+0.4
3,189,550	+				+0.4
3,189,551	-				-1.8
3,189,551	-				-0.2
3,189,551	-				+1.2
3,189,551	-				-0.7
3,189,551	-				-0.4
3,189,551	-				-0.6
3,189,551	-				-1.4
3,189,566	+				+0.6
3,189,566	+				+0.6
3,189,567	-				-0.2
3,189,581	+				+0.5
3,189,581	+				-0.4
3,189,582	-				+0.9
3,189,582	-				-0.1
3,189,582	-				-0.6
3,189,582	-				+0.5
3,189,627	+				-0.3
3,189,645	+				+0.1
3,189,646	-				+1.2
3,189,709	+				-1.9
3,189,721	-				-1.0
3,189,789	+				+0.4
3,189,850	-				-1.6
3,189,864	+				-1.5
3,189,864	+				-0.8
3,189,865	-				+0.0
3,189,865	-				-1.2
3,189,865	-				+0.0
3,189,901	+				+0.8
3,189,901	+				-0.5
3,189,901	+				+0.5
3,189,901	+				+0.1
3,189,901	+				-0.6
3,189,901	+				+0.2
3,189,901	+				+0.5
3,189,901	+				-0.8
3,189,901	+				+1.1
3,189,901	+				+2.7
3,189,901	+				-0.3
3,189,901	+				-0.2
3,189,902	-				-1.9
3,189,902	-				-0.1
3,189,902	-				-0.2
3,189,902	-				-1.4
3,189,902	-				-0.3
3,189,902	-				+0.8
3,189,902	-				+0.4
3,189,902	-				+1.6
3,189,902	-				+0.6
3,189,902	-				+0.7
3,189,903	+				+0.1
3,189,903	+				+0.3
3,189,903	+				-0.1
3,189,903	+				+0.2
3,189,903	+				+0.2
3,189,904	-				-1.8
3,189,904	-				-1.9
3,189,904	-				-0.4
3,189,904	-				-1.6
3,189,904	-				+1.1
3,189,904	-				+0.1
3,189,936	+				-0.9
3,189,936	+				+0.1
3,189,936	+				-0.9
3,189,936	+				-0.9
3,189,936	+				-0.4
3,189,936	+				+1.1
3,189,936	+				+1.4
3,189,936	+				+0.4
3,189,937	-				-1.0
3,189,937	-				-0.2
3,189,937	-				+1.4
3,189,962	-				-1.3
3,189,962	-				-0.5
3,189,977	+				-0.5
3,189,977	+				+1.1
3,189,978	-				-1.1
3,189,978	-				+0.0
3,189,991	+				-1.8
3,189,991	+				+1.4
3,189,991	+				+0.8
3,189,992	-				+0.4
3,189,992	-				-0.6
3,189,992	-				-0.7
3,190,005	+				+0.4
3,190,006	-				+1.0
3,190,013	+				+0.7
3,190,014	-				+2.7
3,190,025	-				+1.4
3,190,032	+				+0.6
3,190,032	+				-0.4
3,190,056	+				-0.7
3,190,056	+				+1.0
3,190,056	+				-0.4
3,190,075	+				-1.0
3,190,076	-				-1.2
3,190,076	-				+0.4
3,190,090	-				-1.2
3,190,179	+				-0.6
3,190,179	+				-0.6
3,190,179	+				-1.6
3,190,179	+				-0.8
3,190,179	+				-0.9
3,190,179	+				+2.2
3,190,179	+				-0.5
3,190,180	-				-0.8
3,190,180	-				-1.8
3,190,180	-				-0.1
3,190,180	-				-1.3
3,190,180	-				+0.4
3,190,184	+				-0.0
3,190,184	+				-0.5
3,190,184	+				-1.9
3,190,185	-				-0.5
3,190,185	-				-0.6
3,190,185	-				-1.3
3,190,185	-				-0.9
3,190,185	-				-0.8
3,190,185	-				+1.6
3,190,185	-				+2.0
3,190,187	+				-0.9
3,190,187	+				-0.1
3,190,187	+				-0.1
3,190,188	-				+0.0
3,190,212	-				-0.9
3,190,234	+				+0.7
3,190,234	+				+1.6
3,190,234	+				-0.6
3,190,234	+				+0.2
3,190,234	+				+0.7
3,190,235	-				-0.0
3,190,235	-				-0.1
3,190,235	-				+0.2
3,190,235	-				+0.0
3,190,239	+				+0.2
3,190,239	+				+0.4
3,190,239	+				-0.8
3,190,239	+				+0.8
3,190,239	+				-0.6
3,190,239	+				+0.5
3,190,239	+				-0.1
3,190,240	-				-1.0
3,190,240	-				-0.1
3,190,240	-				-1.6
3,190,240	-				-0.5
3,190,240	-				-0.4
3,190,240	-				+0.4
3,190,240	-				+1.3
3,190,240	-				+1.8
3,190,240	-				-0.2
3,190,260	+				-0.9
3,190,260	+				-0.3
3,190,261	-				-2.6
3,190,270	+				+1.4
3,190,270	+				+1.0
3,190,290	+				-0.2
3,190,290	+				-0.7
3,190,290	+				+0.3
3,190,290	+				-0.8
3,190,304	+				-0.2
3,190,304	+				+0.8
3,190,304	+				+0.2
3,190,305	-				-1.7
3,190,305	-				+0.2
3,190,305	-				-0.7
3,190,313	+				-1.9
3,190,313	+				-0.5
3,190,313	+				+0.8
3,190,313	+				-1.2
3,190,313	+				+0.4
3,190,314	-				-0.1
3,190,314	-				+0.0
3,190,320	-				-0.8
3,190,370	+				-1.6
3,190,380	+				-0.6
3,190,381	-				-0.8
3,190,394	+				+1.2
3,190,394	+				-0.2
3,190,394	+				-0.6
3,190,394	+				-0.2
3,190,394	+				-0.0
3,190,394	+				-0.3
3,190,394	+				-1.4
3,190,395	-				-0.8
3,190,395	-				+2.4
3,190,395	-				+1.7
3,190,395	-				-1.4
3,190,395	-				+0.8
3,190,396	+				-0.3
3,190,396	+				-0.3
3,190,397	-				-1.1
3,190,397	-				+0.8
3,190,441	+				-0.6
3,190,442	-				-1.5
3,190,460	+				-0.2
3,190,461	-				-1.0
3,190,463	+				-1.2
3,190,488	+				-1.6
3,190,488	+				-0.0
3,190,488	+				+0.1
3,190,488	+				+0.4
3,190,488	+				-0.5
3,190,488	+				+1.7
3,190,488	+				-0.7
3,190,488	+				+1.4
3,190,488	+				+0.1
3,190,488	+				+0.0
3,190,488	+				+3.2
3,190,488	+				-0.5
3,190,488	+				-0.5
3,190,488	+				-0.6
3,190,488	+				+2.4
3,190,488	+				-1.6
3,190,489	-				+0.1
3,190,489	-				+1.1
3,190,489	-				+0.9
3,190,489	-				+0.1
3,190,489	-				+1.7
3,190,489	-				+0.4
3,190,489	-				-0.2
3,190,489	-				-0.6
3,190,489	-				+0.8
3,190,489	-				-1.9
3,190,489	-				-0.3
3,190,489	-				-2.6
3,190,489	-				-1.2
3,190,490	+				-1.2
3,190,490	+				+0.0
3,190,490	+				+0.5
3,190,490	+				-3.8
3,190,491	-				-1.9
3,190,491	-				+0.2
3,190,491	-				+0.3
3,190,491	-				+0.5
3,190,491	-				-0.6
3,190,491	-				+0.3
3,190,491	-				+0.3
3,190,530	+				+0.6
3,190,551	-				+0.3
3,190,551	-				-1.4
3,190,551	-				-0.8
3,190,651	+		DZA65_RS14675	0.16	+1.0
3,190,652	-		DZA65_RS14675	0.16	+1.0
3,190,690	+		DZA65_RS14675	0.20	-0.9
3,190,691	-		DZA65_RS14675	0.20	-0.5
3,190,715	+		DZA65_RS14675	0.22	+1.1
3,190,715	+		DZA65_RS14675	0.22	-0.3
3,190,715	+		DZA65_RS14675	0.22	+0.2
3,190,715	+		DZA65_RS14675	0.22	+0.8
3,190,715	+		DZA65_RS14675	0.22	-2.2
3,190,715	+		DZA65_RS14675	0.22	+0.5
3,190,715	+		DZA65_RS14675	0.22	+0.2
3,190,715	+		DZA65_RS14675	0.22	-1.2
3,190,715	+		DZA65_RS14675	0.22	-0.6
3,190,715	+		DZA65_RS14675	0.22	-1.4
3,190,715	+		DZA65_RS14675	0.22	-0.0
3,190,716	-		DZA65_RS14675	0.22	-2.6
3,190,716	-		DZA65_RS14675	0.22	+0.4
3,190,716	-		DZA65_RS14675	0.22	-0.3
3,190,716	-		DZA65_RS14675	0.22	+0.8
3,190,716	-		DZA65_RS14675	0.22	+1.1
3,190,716	-		DZA65_RS14675	0.22	-0.1
3,190,716	-		DZA65_RS14675	0.22	-0.1
3,190,716	-		DZA65_RS14675	0.22	-0.8
3,190,716	-		DZA65_RS14675	0.22	+0.4
3,190,716	-		DZA65_RS14675	0.22	+0.4
3,190,771	+		DZA65_RS14675	0.28	+0.3
3,190,771	+		DZA65_RS14675	0.28	+0.4
3,190,772	-		DZA65_RS14675	0.28	+1.2
3,190,772	-		DZA65_RS14675	0.28	+0.1
3,190,862	-		DZA65_RS14675	0.37	-0.9
3,190,862	-		DZA65_RS14675	0.37	-1.5
3,190,862	-		DZA65_RS14675	0.37	+0.7
3,190,863	+		DZA65_RS14675	0.37	-0.1
3,190,863	+		DZA65_RS14675	0.37	+0.2
3,190,863	+		DZA65_RS14675	0.37	-0.0
3,190,863	+		DZA65_RS14675	0.37	+0.9
3,190,863	+		DZA65_RS14675	0.37	+0.9
3,190,863	+		DZA65_RS14675	0.37	-0.5
3,190,864	-		DZA65_RS14675	0.37	+0.3
3,190,864	-		DZA65_RS14675	0.37	-0.3
3,190,864	-		DZA65_RS14675	0.37	+1.4
3,190,864	-		DZA65_RS14675	0.37	-2.1
3,190,864	-		DZA65_RS14675	0.37	+0.1
3,190,876	+		DZA65_RS14675	0.38	-1.4
3,190,876	+		DZA65_RS14675	0.38	-0.9
3,190,877	-		DZA65_RS14675	0.39	-1.7
3,190,900	+		DZA65_RS14675	0.41	+0.6
3,190,900	+		DZA65_RS14675	0.41	-0.6
3,190,901	-		DZA65_RS14675	0.41	-0.2
3,190,901	-		DZA65_RS14675	0.41	+0.1
3,190,901	-		DZA65_RS14675	0.41	+0.4
3,190,901	-		DZA65_RS14675	0.41	-0.3
3,190,948	-		DZA65_RS14675	0.46	+0.4
3,191,042	-		DZA65_RS14675	0.55	+0.7
3,191,042	-		DZA65_RS14675	0.55	-0.5
3,191,042	-		DZA65_RS14675	0.55	+2.2
3,191,095	+		DZA65_RS14675	0.60	-0.5
3,191,184	+		DZA65_RS14675	0.69	-2.8
3,191,185	-		DZA65_RS14675	0.69	+1.6
3,191,185	-		DZA65_RS14675	0.69	-1.9
3,191,185	-		DZA65_RS14675	0.69	-1.2
3,191,185	-		DZA65_RS14675	0.69	+0.4
3,191,185	-		DZA65_RS14675	0.69	+1.4
3,191,185	-		DZA65_RS14675	0.69	-0.1
3,191,216	-		DZA65_RS14675	0.73	+1.1
3,191,216	-		DZA65_RS14675	0.73	+1.0
3,191,279	+		DZA65_RS14675	0.79	-0.1
3,191,279	+		DZA65_RS14675	0.79	-1.6
3,191,279	+		DZA65_RS14675	0.79	-0.7
3,191,279	+		DZA65_RS14675	0.79	-1.6
3,191,279	+		DZA65_RS14675	0.79	-1.9
3,191,310	+		DZA65_RS14675	0.82	+0.6
3,191,311	-		DZA65_RS14675	0.82	+1.5
3,191,311	-		DZA65_RS14675	0.82	+1.1
3,191,311	-		DZA65_RS14675	0.82	+1.0
3,191,332	+		DZA65_RS14675	0.84	+0.5
3,191,332	+		DZA65_RS14675	0.84	-0.1
3,191,332	+		DZA65_RS14675	0.84	+0.1
3,191,332	+		DZA65_RS14675	0.84	+2.0
3,191,332	+		DZA65_RS14675	0.84	+0.4
3,191,332	+		DZA65_RS14675	0.84	-1.2
3,191,333	-		DZA65_RS14675	0.84	+2.5
3,191,333	-				-1.6
3,191,333	-		DZA65_RS14675	0.84	+1.1
3,191,333	-		DZA65_RS14675	0.84	-1.6
3,191,355	+		DZA65_RS14675	0.87	+0.7
3,191,355	+		DZA65_RS14675	0.87	-0.4
3,191,355	+		DZA65_RS14675	0.87	+1.4
3,191,356	-		DZA65_RS14675	0.87	-0.4
3,191,356	-		DZA65_RS14675	0.87	+0.2
3,191,356	-		DZA65_RS14675	0.87	-0.9
3,191,356	-		DZA65_RS14675	0.87	+0.9
3,191,414	+				+0.8
3,191,414	+				-0.8
3,191,415	-				-0.6
3,191,415	-				+0.1
3,191,415	-				+1.4
3,191,415	-				-0.6
3,191,437	+				-0.1
3,191,463	-				+0.3
3,191,482	+				-0.3
3,191,488	+				-0.0
3,191,506	+				+0.2
3,191,506	+				+2.2
3,191,506	+				-2.6
3,191,506	+				+0.4
3,191,506	+				-0.7
3,191,506	+				-0.4
3,191,506	+				-0.9
3,191,506	+				-0.8
3,191,506	+				-0.7
3,191,507	-				-0.3
3,191,507	-				-0.2
3,191,507	-				+1.2
3,191,507	-				+1.0
3,191,507	-				+0.4
3,191,507	-				-0.3
3,191,507	-				+0.0
3,191,507	-				+0.8
3,191,507	-				+0.4
3,191,507	-				+0.8
3,191,507	-				-0.1
3,191,508	+				+0.9
3,191,520	+				-2.6
3,191,520	+				+0.6
3,191,574	+				+0.1
3,191,574	+				-2.2
3,191,575	-				-0.2
3,191,582	+				-0.6
3,191,582	+				+0.7
3,191,583	-				-0.2
3,191,583	-				-0.3
3,191,583	-				+0.4
3,191,638	+				-0.3
3,191,638	+				+0.2
3,191,650	+				+1.7
3,191,650	+				-0.6
3,191,650	+				-1.3
3,191,650	+				-1.1
3,191,650	+				+0.8
3,191,650	+				-0.2
3,191,650	+				+1.1
3,191,650	+				-0.6
3,191,650	+				+2.2
3,191,650	+				+0.6
3,191,651	-				-0.3
3,191,651	-				-1.2
3,191,651	-				-0.3
3,191,662	+				-1.6
3,191,672	+				-0.7
3,191,672	+				-1.3
3,191,672	+				+0.4
3,191,672	+				+0.4
3,191,672	+				+0.4
3,191,673	-				+0.7
3,191,673	-				+1.4
3,191,673	-				-0.2
3,191,673	-				-0.6
3,191,686	+				+0.4
3,191,726	+				+1.2
3,191,726	+				+0.7
3,191,726	+				-0.6
3,191,726	+				+0.5
3,191,726	+				-0.6
3,191,726	+				-0.4
3,191,726	+				+0.4
3,191,727	-				-0.4
3,191,727	-				+0.5
3,191,727	-				+0.8
3,191,727	-				+0.2
3,191,727	-				+0.4
3,191,727	-				+0.1
3,191,727	-				-1.2
3,191,762	+				-0.0
3,191,762	+				+0.4
3,191,861	+				+0.7
3,191,861	+				+1.7
3,191,862	-				+2.2
3,191,862	-				+0.4
3,191,862	-				+0.1
3,191,862	-				+0.4
3,191,882	+				+0.4
3,191,882	+				+2.4
3,191,930	+				-2.2
3,191,930	+				+0.7
3,191,931	-				-0.1
3,191,931	-				+0.6
3,191,931	-				+1.2
3,191,931	-				-2.2
3,191,934	+				-0.4
3,191,934	+				-0.4
3,191,935	-				-1.9
3,191,935	-				-0.6
3,191,935	-				+0.4
3,191,994	+				+0.8
3,191,995	-				-1.0
3,191,998	+				-0.4
3,191,999	-				-1.2
3,192,221	+				-1.6
3,192,253	+		DZA65_RS14680	0.10	+0.5
3,192,253	+		DZA65_RS14680	0.10	+0.6
3,192,253	+		DZA65_RS14680	0.10	+0.2
3,192,253	+		DZA65_RS14680	0.10	-0.6
3,192,254	-		DZA65_RS14680	0.10	-0.7
3,192,254	-		DZA65_RS14680	0.10	-0.3
3,192,254	-		DZA65_RS14680	0.10	-1.4
3,192,254	-		DZA65_RS14680	0.10	+0.9
3,192,254	-		DZA65_RS14680	0.10	-0.2
3,192,254	-		DZA65_RS14680	0.10	+1.0
3,192,345	+				+0.2
3,192,346	-		DZA65_RS14680	0.33	-0.7
3,192,346	-		DZA65_RS14680	0.33	-0.1
3,192,346	-		DZA65_RS14680	0.33	+0.3
3,192,346	-		DZA65_RS14680	0.33	+0.3