Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14560

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,170,643	+		DZA65_RS14555	0.57	-1.9
3,170,643	+		DZA65_RS14555	0.57	+0.4
3,170,643	+		DZA65_RS14555	0.57	-2.4
3,170,644	-		DZA65_RS14555	0.57	+0.1
3,170,647	+		DZA65_RS14555	0.58	-1.4
3,170,648	-		DZA65_RS14555	0.58	-1.9
3,170,648	-		DZA65_RS14555	0.58	+0.4
3,170,648	-		DZA65_RS14555	0.58	-1.2
3,170,648	-		DZA65_RS14555	0.58	+1.2
3,170,648	-		DZA65_RS14555	0.58	-0.7
3,170,683	+		DZA65_RS14555	0.61	+1.5
3,170,683	+		DZA65_RS14555	0.61	+0.6
3,170,699	+		DZA65_RS14555	0.63	+0.4
3,170,699	+		DZA65_RS14555	0.63	-0.3
3,170,699	+		DZA65_RS14555	0.63	-0.3
3,170,700	-		DZA65_RS14555	0.63	+0.4
3,170,700	-		DZA65_RS14555	0.63	-0.2
3,170,700	-		DZA65_RS14555	0.63	+0.7
3,170,700	-		DZA65_RS14555	0.63	+2.2
3,170,700	-		DZA65_RS14555	0.63	-0.6
3,170,766	+		DZA65_RS14555	0.71	-0.4
3,170,767	-		DZA65_RS14555	0.71	+1.8
3,170,837	+		DZA65_RS14555	0.78	+0.3
3,170,856	+		DZA65_RS14555	0.81	-0.0
3,170,857	-		DZA65_RS14555	0.81	+0.5
3,170,857	-		DZA65_RS14555	0.81	-1.2
3,170,857	-		DZA65_RS14555	0.81	-1.2
3,170,886	-		DZA65_RS14555	0.84	-0.9
3,170,894	-		DZA65_RS14555	0.85	-0.1
3,170,910	+		DZA65_RS14555	0.86	-1.9
3,170,911	-		DZA65_RS14555	0.87	-0.4
3,170,930	+		DZA65_RS14555	0.89	+0.6
3,170,930	+		DZA65_RS14555	0.89	+0.6
3,170,930	+		DZA65_RS14555	0.89	-0.4
3,170,930	+		DZA65_RS14555	0.89	+0.2
3,170,931	-		DZA65_RS14555	0.89	-1.2
3,170,943	+				-2.3
3,170,944	-				+0.2
3,170,952	-				-0.4
3,170,962	+				-1.2
3,170,962	+				-1.4
3,170,963	-				-0.1
3,170,984	+				+0.9
3,170,984	+				-0.5
3,170,985	-				-0.1
3,170,985	-				+0.4
3,170,985	-				-1.1
3,170,986	+				+0.3
3,170,986	+				-0.5
3,170,986	+				-1.8
3,170,986	+				-2.2
3,170,987	-				-0.5
3,171,030	+				-0.6
3,171,030	+				-2.4
3,171,031	-				+0.2
3,171,053	+				-0.7
3,171,053	+				+0.4
3,171,053	+				-0.1
3,171,053	+				-0.4
3,171,054	-				-0.6
3,171,054	-				+0.5
3,171,054	-				-1.8
3,171,054	-				+0.7
3,171,056	+				+0.7
3,171,056	+				-1.5
3,171,057	-				-0.8
3,171,057	-				-0.2
3,171,139	+				+2.0
3,171,139	+				-1.8
3,171,139	+				+0.0
3,171,139	+				+0.7
3,171,139	+				+0.5
3,171,139	+				+0.1
3,171,139	+				+0.3
3,171,139	+				-0.4
3,171,139	+				+0.5
3,171,139	+				-0.8
3,171,140	-				+0.6
3,171,140	-				-0.2
3,171,140	-				-0.6
3,171,140	-				-0.3
3,171,140	-				-1.4
3,171,140	-				+1.4
3,171,140	-				-0.2
3,171,161	+				+0.4
3,171,162	-				-2.0
3,171,164	+				-3.9
3,171,164	+				-0.1
3,171,164	+				+0.1
3,171,164	+				+0.4
3,171,165	-				-0.3
3,171,178	+				-1.9
3,171,179	-				+0.6
3,171,185	+				-0.6
3,171,185	+				-0.8
3,171,186	-				-0.5
3,171,186	-				-1.2
3,171,190	-				+0.8
3,171,190	-				-1.0
3,171,202	+				+0.1
3,171,203	-				-1.0
3,171,235	+				-1.0
3,171,235	+				-0.2
3,171,236	-				-0.2
3,171,236	-				-1.2
3,171,259	+				+0.0
3,171,308	+				-1.2
3,171,324	+				-1.2
3,171,324	+				-0.2
3,171,324	+				+0.4
3,171,325	-				+0.2
3,171,325	-				-1.6
3,171,343	-				-1.9
3,171,343	-				+1.0
3,171,343	-				+0.6
3,171,343	-				-0.3
3,171,344	+				-0.6
3,171,344	+				+0.2
3,171,344	+				+2.0
3,171,344	+				-1.9
3,171,344	+				-0.0
3,171,344	+				-0.2
3,171,344	+				-0.2
3,171,345	-				+0.1
3,171,345	-				-1.0
3,171,345	-				-0.8
3,171,345	-				+1.0
3,171,345	-				-0.2
3,171,345	-				-0.2
3,171,346	+				-1.9
3,171,346	+				+0.4
3,171,346	+				-0.3
3,171,346	+				-0.4
3,171,346	+				-1.6
3,171,346	+				-2.8
3,171,347	-				-1.4
3,171,347	-				-0.3
3,171,347	-				-0.6
3,171,347	-				+0.6
3,171,347	-				-0.8
3,171,347	-				-0.6
3,171,463	+				+0.5
3,171,466	+				-0.1
3,171,466	+				+0.2
3,171,467	-				+0.1
3,171,468	+				-1.4
3,171,468	+				-1.0
3,171,468	+				-1.2
3,171,469	-				+0.1
3,171,469	-				-0.8
3,171,472	+				-0.4
3,171,472	+				+0.8
3,171,472	+				-0.4
3,171,473	-				-0.8
3,171,473	-				+0.4
3,171,474	+				-1.9
3,171,496	+				-0.9
3,171,508	+				-0.6
3,171,508	+				-0.6
3,171,509	-				+0.8
3,171,509	-				-0.0
3,171,513	+				+0.0
3,171,513	+				-0.6
3,171,514	-				-1.1
3,171,514	-				-0.1
3,171,514	-				+1.2
3,171,514	-				-0.1
3,171,514	-				+0.5
3,171,515	+				+1.0
3,171,515	+				-0.2
3,171,515	+				+0.4
3,171,516	-				-0.2
3,171,516	-				+0.3
3,171,568	-				-1.6
3,171,620	+				-0.4
3,171,621	-				-0.3
3,171,647	+		DZA65_RS14560	0.17	+1.2
3,171,647	+		DZA65_RS14560	0.17	-1.6
3,171,647	+		DZA65_RS14560	0.17	-0.9
3,171,648	-		DZA65_RS14560	0.17	-0.6
3,171,648	-		DZA65_RS14560	0.17	+2.2
3,171,648	-		DZA65_RS14560	0.17	+0.2
3,171,648	-		DZA65_RS14560	0.17	-2.4
3,171,648	-		DZA65_RS14560	0.17	-0.5
3,171,651	+		DZA65_RS14560	0.18	-0.2
3,171,651	+		DZA65_RS14560	0.18	-0.2
3,171,651	+		DZA65_RS14560	0.18	-0.0
3,171,651	+		DZA65_RS14560	0.18	-1.6
3,171,652	-		DZA65_RS14560	0.18	-0.4
3,171,652	-		DZA65_RS14560	0.18	+0.0
3,171,652	-		DZA65_RS14560	0.18	-0.7
3,171,652	-		DZA65_RS14560	0.18	-1.9
3,171,652	-		DZA65_RS14560	0.18	+0.1
3,171,656	-		DZA65_RS14560	0.20	-0.1
3,171,658	-		DZA65_RS14560	0.20	-0.8
3,171,716	+		DZA65_RS14560	0.37	+1.0
3,171,716	+		DZA65_RS14560	0.37	-0.6
3,171,716	+		DZA65_RS14560	0.37	+1.4
3,171,716	+		DZA65_RS14560	0.37	+0.1
3,171,716	+		DZA65_RS14560	0.37	+0.2
3,171,716	+		DZA65_RS14560	0.37	-1.3
3,171,717	-		DZA65_RS14560	0.37	-1.4
3,171,717	-		DZA65_RS14560	0.37	-1.6
3,171,717	-		DZA65_RS14560	0.37	-0.5
3,171,717	-		DZA65_RS14560	0.37	+2.0
3,171,761	+		DZA65_RS14560	0.50	-0.6
3,171,782	+		DZA65_RS14560	0.56	-0.5
3,171,782	+		DZA65_RS14560	0.56	-0.4
3,171,783	-		DZA65_RS14560	0.57	+1.1
3,171,891	+		DZA65_RS14560	0.88	+0.5
3,171,891	+		DZA65_RS14560	0.88	-0.2
3,171,891	+		DZA65_RS14560	0.88	-0.3
3,171,892	-		DZA65_RS14560	0.89	-0.9
3,171,906	+				+1.6
3,171,906	+				+1.0
3,171,907	-				+1.0
3,171,907	-				+0.4
3,171,919	+				+0.1
3,171,919	+				+0.2
3,171,929	-				-0.5
3,171,944	+				-0.6
3,171,944	+				-1.2
3,171,944	+				-2.2
3,171,945	-				+0.5
3,171,945	-				+0.4
3,171,945	-				-0.6
3,171,945	-				+0.3
3,171,945	-				+0.2
3,171,945	-				+0.2
3,171,946	+				-0.6
3,171,946	+				-0.8
3,171,946	+				-0.7
3,171,947	-				-1.2
3,171,947	-				-1.5
3,171,947	-				+0.4
3,171,947	-				-2.1
3,171,949	+				-1.2
3,171,949	+				+0.6
3,171,949	+				-0.6
3,171,949	+				+0.8
3,171,950	-				+0.2
3,171,950	-				-2.6
3,171,950	-				-1.2
3,171,950	-				-0.2
3,171,950	-				-1.6
3,171,950	-				-1.6
3,171,951	+				+0.8
3,171,951	+				+0.6
3,171,951	+				-0.3
3,171,952	-				+0.7
3,171,971	+				-1.8
3,171,972	-				+0.3
3,171,979	+				+0.7
3,171,980	-				+0.1
3,171,992	+				-0.4
3,171,995	+				-1.8
3,171,995	+				-1.9
3,171,995	+				-1.6
3,171,995	+				-1.4
3,172,045	+				-0.8
3,172,045	+				-0.2
3,172,046	-				+1.5
3,172,097	+		DZA65_RS14565	0.15	-1.0
3,172,097	+		DZA65_RS14565	0.15	+0.4
3,172,098	-		DZA65_RS14565	0.15	+0.6
3,172,117	+		DZA65_RS14565	0.18	-0.2
3,172,118	-		DZA65_RS14565	0.18	-0.6
3,172,138	+		DZA65_RS14565	0.21	-0.2
3,172,138	+		DZA65_RS14565	0.21	-1.2
3,172,138	+		DZA65_RS14565	0.21	-1.2
3,172,138	+		DZA65_RS14565	0.21	-0.2
3,172,139	-		DZA65_RS14565	0.21	-0.2
3,172,141	+		DZA65_RS14565	0.21	+0.0
3,172,162	-		DZA65_RS14565	0.24	-0.2
3,172,173	+				-1.2
3,172,230	+		DZA65_RS14565	0.34	-0.6
3,172,230	+		DZA65_RS14565	0.34	-0.9
3,172,230	+		DZA65_RS14565	0.34	-1.6
3,172,231	-		DZA65_RS14565	0.34	+0.2
3,172,231	-		DZA65_RS14565	0.34	+0.2
3,172,231	-		DZA65_RS14565	0.34	-1.4
3,172,277	-		DZA65_RS14565	0.40	-1.9
3,172,280	-		DZA65_RS14565	0.41	-0.6
3,172,280	-		DZA65_RS14565	0.41	-0.9
3,172,282	+		DZA65_RS14565	0.41	+0.4
3,172,282	+		DZA65_RS14565	0.41	+0.4
3,172,282	+		DZA65_RS14565	0.41	-0.5
3,172,282	+		DZA65_RS14565	0.41	-0.6
3,172,282	+		DZA65_RS14565	0.41	-0.3
3,172,282	+		DZA65_RS14565	0.41	-1.9
3,172,283	-		DZA65_RS14565	0.41	-0.9
3,172,283	-		DZA65_RS14565	0.41	+1.0
3,172,283	-		DZA65_RS14565	0.41	-0.6
3,172,283	-		DZA65_RS14565	0.41	-1.3
3,172,283	-		DZA65_RS14565	0.41	-0.2
3,172,283	-		DZA65_RS14565	0.41	+0.1
3,172,283	-		DZA65_RS14565	0.41	-1.0
3,172,283	-		DZA65_RS14565	0.41	+0.6
3,172,309	-		DZA65_RS14565	0.45	+1.5
3,172,314	+		DZA65_RS14565	0.46	-0.8
3,172,331	-		DZA65_RS14565	0.48	-0.2
3,172,407	+		DZA65_RS14565	0.59	-0.1
3,172,408	-		DZA65_RS14565	0.59	+0.5
3,172,409	+		DZA65_RS14565	0.59	-0.6
3,172,409	+		DZA65_RS14565	0.59	-0.1
3,172,409	+		DZA65_RS14565	0.59	-0.3
3,172,409	+		DZA65_RS14565	0.59	-3.1
3,172,409	+		DZA65_RS14565	0.59	+1.7
3,172,409	+		DZA65_RS14565	0.59	+0.7
3,172,409	+		DZA65_RS14565	0.59	-0.2
3,172,409	+		DZA65_RS14565	0.59	-0.3
3,172,410	-		DZA65_RS14565	0.60	-0.0
3,172,410	-		DZA65_RS14565	0.60	-0.5
3,172,410	-		DZA65_RS14565	0.60	+1.2
3,172,410	-		DZA65_RS14565	0.60	+1.2
3,172,462	+		DZA65_RS14565	0.67	-0.0
3,172,462	+		DZA65_RS14565	0.67	-0.6
3,172,462	+		DZA65_RS14565	0.67	-0.3
3,172,462	+		DZA65_RS14565	0.67	-1.6
3,172,463	-		DZA65_RS14565	0.67	-1.2
3,172,463	-		DZA65_RS14565	0.67	-0.3
3,172,463	-		DZA65_RS14565	0.67	-1.9
3,172,463	-		DZA65_RS14565	0.67	+0.2
3,172,509	+		DZA65_RS14565	0.74	-0.1
3,172,510	-		DZA65_RS14565	0.74	+1.1
3,172,510	-		DZA65_RS14565	0.74	+0.5
3,172,510	-		DZA65_RS14565	0.74	+0.2
3,172,510	-		DZA65_RS14565	0.74	+0.4
3,172,510	-		DZA65_RS14565	0.74	+0.1
3,172,510	-		DZA65_RS14565	0.74	-0.1
3,172,510	-		DZA65_RS14565	0.74	-0.6
3,172,564	+		DZA65_RS14565	0.82	+0.1
3,172,565	-		DZA65_RS14565	0.82	-0.4
3,172,578	+		DZA65_RS14565	0.84	-1.2
3,172,578	+		DZA65_RS14565	0.84	-0.5
3,172,578	+		DZA65_RS14565	0.84	+0.2
3,172,579	-		DZA65_RS14565	0.84	-1.5
3,172,579	-		DZA65_RS14565	0.84	-0.1
3,172,582	+		DZA65_RS14565	0.84	+0.4
3,172,583	-		DZA65_RS14565	0.84	-0.6
3,172,609	-		DZA65_RS14565	0.88	+0.3
3,172,641	+				+0.4
3,172,649	+				+0.6
3,172,649	+				-0.4
3,172,649	+				-0.8
3,172,650	-				-0.4
3,172,650	-				+1.8
3,172,650	-				+0.2
3,172,650	-				-0.7
3,172,650	-				-0.8
3,172,650	-				-1.2
3,172,678	+				-0.3
3,172,678	+				-0.4
3,172,679	-				-2.2
3,172,679	-				-1.1
3,172,679	-				+0.0
3,172,777	+				+0.2
3,172,777	+				+0.1
3,172,781	-				-2.9
3,172,781	-				+0.4
3,172,805	+				-0.1
3,172,805	+				-0.0
3,172,806	-				+0.6
3,172,806	-				-0.9
3,172,850	+				+0.4
3,172,851	-				+0.2
3,172,869	+		DZA65_RS14570	0.10	+0.4
3,172,869	+		DZA65_RS14570	0.10	-1.8
3,172,869	+		DZA65_RS14570	0.10	-0.4
3,172,869	+		DZA65_RS14570	0.10	-0.9
3,172,910	+		DZA65_RS14570	0.16	-0.3
3,172,911	-		DZA65_RS14570	0.16	+2.2
3,172,911	-		DZA65_RS14570	0.16	-1.2
3,172,911	-		DZA65_RS14570	0.16	-1.2
3,172,923	+		DZA65_RS14570	0.18	+0.1
3,172,923	+		DZA65_RS14570	0.18	+1.2
3,172,924	-		DZA65_RS14570	0.18	-0.9
3,172,928	+		DZA65_RS14570	0.19	+1.7