Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14245

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,111,450	+				-0.5
3,111,511	-				-0.6
3,111,524	-				+0.5
3,111,529	-				-0.5
3,111,555	+				+0.4
3,111,628	-				-1.1
3,111,633	-				-0.2
3,111,633	-				-0.7
3,111,647	+				+0.1
3,111,649	+				-1.1
3,111,773	-				-0.7
3,111,817	+				+0.3
3,111,818	-				-0.8
3,111,828	+				+0.6
3,111,828	+				-0.3
3,111,828	+				-1.0
3,111,869	-				+0.2
3,111,933	+				+0.0
3,111,934	-				-0.3
3,111,943	+				-3.6
3,112,009	+				-1.2
3,112,009	+				+0.9
3,112,010	-				-0.9
3,112,010	-				+0.1
3,112,013	+				-0.3
3,112,013	+				+0.1
3,112,013	+				+0.6
3,112,032	+				-1.6
3,112,090	-				-0.0
3,112,114	+				-0.2
3,112,117	-				-0.6
3,112,145	-				+1.1
3,112,145	-				-1.3
3,112,181	-				-1.8
3,112,191	-				+0.2
3,112,349	+				+0.6
3,112,354	-				-2.4
3,112,435	-				-0.3
3,112,435	-				+0.2
3,112,446	+				+1.1
3,112,528	-		DZA65_RS14245	0.32	+0.1
3,112,560	-		DZA65_RS14245	0.45	+1.0
3,112,560	-		DZA65_RS14245	0.45	-1.8
3,112,599	+		DZA65_RS14245	0.60	-1.5
3,112,600	-		DZA65_RS14245	0.61	-1.1
3,112,622	+		DZA65_RS14245	0.69	-0.0
3,112,622	+		DZA65_RS14245	0.69	-0.8
3,112,622	+		DZA65_RS14245	0.69	-0.4
3,112,696	+				-0.1
3,112,696	+				+0.4
3,112,696	+				+0.7
3,112,697	-				+0.6
3,112,727	+				-0.1
3,112,728	-				-1.0
3,112,728	-				-1.6
3,112,759	+				+2.0
3,112,760	-				-0.5
3,112,795	-				-1.3
3,112,849	+				+0.4
3,112,850	-				-1.5
3,112,861	-				-0.6
3,112,910	+		DZA65_RS14250	0.12	-0.1
3,112,910	+		DZA65_RS14250	0.12	-0.6
3,112,911	-		DZA65_RS14250	0.12	-0.6
3,112,911	-		DZA65_RS14250	0.12	-0.6
3,112,911	-		DZA65_RS14250	0.12	-0.9
3,112,911	-		DZA65_RS14250	0.12	-0.9
3,112,911	-		DZA65_RS14250	0.12	+0.6
3,112,911	-		DZA65_RS14250	0.12	+1.3
3,112,916	+		DZA65_RS14250	0.12	-0.4
3,112,916	+		DZA65_RS14250	0.12	+0.5
3,112,916	+		DZA65_RS14250	0.12	-1.9
3,112,917	-		DZA65_RS14250	0.12	-0.7
3,112,917	-		DZA65_RS14250	0.12	-0.3
3,112,917	-				+0.4
3,112,917	-		DZA65_RS14250	0.12	-2.6
3,112,917	-		DZA65_RS14250	0.12	+0.4
3,112,919	-		DZA65_RS14250	0.13	-0.8
3,112,919	-		DZA65_RS14250	0.13	-0.2
3,112,929	+		DZA65_RS14250	0.13	-0.8
3,112,929	+		DZA65_RS14250	0.13	-0.8
3,112,929	+		DZA65_RS14250	0.13	+0.7
3,112,930	-		DZA65_RS14250	0.14	-0.3
3,112,938	+		DZA65_RS14250	0.14	-0.8
3,112,959	+				+0.4
3,112,959	+		DZA65_RS14250	0.16	+0.9
3,113,008	-		DZA65_RS14250	0.20	-0.6
3,113,008	-		DZA65_RS14250	0.20	+1.0
3,113,101	+		DZA65_RS14250	0.27	+0.0
3,113,117	+		DZA65_RS14250	0.28	-1.9
3,113,118	-		DZA65_RS14250	0.28	-0.5
3,113,123	+		DZA65_RS14250	0.29	-1.9
3,113,125	-		DZA65_RS14250	0.29	+0.1
3,113,174	+		DZA65_RS14250	0.33	+0.8
3,113,174	+		DZA65_RS14250	0.33	+1.1
3,113,174	+		DZA65_RS14250	0.33	+2.2
3,113,175	-		DZA65_RS14250	0.33	+0.4
3,113,175	-		DZA65_RS14250	0.33	+0.3
3,113,175	-		DZA65_RS14250	0.33	-0.1
3,113,175	-		DZA65_RS14250	0.33	+0.7
3,113,183	+		DZA65_RS14250	0.34	-0.6
3,113,183	+		DZA65_RS14250	0.34	+1.1
3,113,183	+		DZA65_RS14250	0.34	-1.3
3,113,183	+		DZA65_RS14250	0.34	+0.8
3,113,184	-		DZA65_RS14250	0.34	-1.0
3,113,184	-		DZA65_RS14250	0.34	+0.6
3,113,184	-		DZA65_RS14250	0.34	-0.6
3,113,184	-		DZA65_RS14250	0.34	+2.0
3,113,184	-		DZA65_RS14250	0.34	+1.4
3,113,184	-		DZA65_RS14250	0.34	-1.6
3,113,205	+		DZA65_RS14250	0.35	+1.2
3,113,205	+		DZA65_RS14250	0.35	+0.0
3,113,205	+		DZA65_RS14250	0.35	-0.6
3,113,205	+		DZA65_RS14250	0.35	-0.3
3,113,206	-		DZA65_RS14250	0.35	-0.8
3,113,226	+		DZA65_RS14250	0.37	+0.4
3,113,226	+		DZA65_RS14250	0.37	-0.6
3,113,226	+		DZA65_RS14250	0.37	-0.1
3,113,227	-		DZA65_RS14250	0.37	+0.6
3,113,227	-		DZA65_RS14250	0.37	-1.7
3,113,227	-		DZA65_RS14250	0.37	-0.9
3,113,227	-		DZA65_RS14250	0.37	+1.8
3,113,230	+		DZA65_RS14250	0.37	-1.2
3,113,231	-		DZA65_RS14250	0.37	-0.4
3,113,248	+		DZA65_RS14250	0.39	+1.7
3,113,248	+		DZA65_RS14250	0.39	+0.2
3,113,249	-		DZA65_RS14250	0.39	+0.4
3,113,249	-		DZA65_RS14250	0.39	-1.0
3,113,249	-		DZA65_RS14250	0.39	-0.4
3,113,249	-		DZA65_RS14250	0.39	+1.4
3,113,297	+		DZA65_RS14250	0.43	+0.8
3,113,297	+		DZA65_RS14250	0.43	-1.6
3,113,297	+		DZA65_RS14250	0.43	+1.2
3,113,298	-		DZA65_RS14250	0.43	-0.2
3,113,298	-		DZA65_RS14250	0.43	-0.9
3,113,298	-		DZA65_RS14250	0.43	-2.1
3,113,298	-		DZA65_RS14250	0.43	+0.4
3,113,298	-		DZA65_RS14250	0.43	-0.3
3,113,358	+		DZA65_RS14250	0.48	-0.9
3,113,359	-		DZA65_RS14250	0.48	-0.8
3,113,373	+		DZA65_RS14250	0.49	-0.3
3,113,374	-		DZA65_RS14250	0.49	+0.8
3,113,374	-		DZA65_RS14250	0.49	+1.6
3,113,374	-		DZA65_RS14250	0.49	-1.9
3,113,474	+		DZA65_RS14250	0.57	+0.5
3,113,475	-		DZA65_RS14250	0.57	+0.7
3,113,566	+		DZA65_RS14250	0.64	+0.1
3,113,566	+		DZA65_RS14250	0.64	-0.4
3,113,593	+		DZA65_RS14250	0.66	-0.7
3,113,594	-		DZA65_RS14250	0.66	+0.5
3,113,672	+		DZA65_RS14250	0.73	-1.3
3,113,672	+		DZA65_RS14250	0.73	+0.8
3,113,672	+		DZA65_RS14250	0.73	+0.6
3,113,672	+		DZA65_RS14250	0.73	-0.4
3,113,672	+		DZA65_RS14250	0.73	-0.9
3,113,673	-		DZA65_RS14250	0.73	+0.2
3,113,673	-		DZA65_RS14250	0.73	+0.7
3,113,673	-		DZA65_RS14250	0.73	+0.0
3,113,673	-		DZA65_RS14250	0.73	+0.6
3,113,673	-		DZA65_RS14250	0.73	-0.6
3,113,673	-		DZA65_RS14250	0.73	-0.8
3,113,673	-		DZA65_RS14250	0.73	+0.1
3,113,673	-		DZA65_RS14250	0.73	-0.8
3,113,673	-		DZA65_RS14250	0.73	-1.3
3,113,673	-		DZA65_RS14250	0.73	+0.2
3,113,674	+		DZA65_RS14250	0.73	-0.8
3,113,674	+		DZA65_RS14250	0.73	+1.2
3,113,674	+		DZA65_RS14250	0.73	-1.1
3,113,675	-		DZA65_RS14250	0.73	+0.8
3,113,675	-		DZA65_RS14250	0.73	+0.2
3,113,675	-		DZA65_RS14250	0.73	+0.8
3,113,675	-		DZA65_RS14250	0.73	+1.1
3,113,675	-		DZA65_RS14250	0.73	-0.1
3,113,681	-		DZA65_RS14250	0.73	-1.0
3,113,692	+		DZA65_RS14250	0.74	-1.9
3,113,692	+		DZA65_RS14250	0.74	+0.8
3,113,692	+		DZA65_RS14250	0.74	+0.1
3,113,692	+		DZA65_RS14250	0.74	+1.2
3,113,692	+		DZA65_RS14250	0.74	+2.0
3,113,693	-		DZA65_RS14250	0.74	-0.2
3,113,693	-		DZA65_RS14250	0.74	-0.8
3,113,693	-		DZA65_RS14250	0.74	-1.9