Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14035

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,007,993	+		DZA65_RS14020	0.87	-1.5
3,008,014	+				-1.1
3,008,034	+				-0.8
3,008,035	-				-0.5
3,008,049	-				-1.3
3,008,114	+		DZA65_RS14025	0.18	-1.4
3,008,114	+		DZA65_RS14025	0.18	-1.2
3,008,114	+		DZA65_RS14025	0.18	-1.6
3,008,115	-		DZA65_RS14025	0.18	+1.0
3,008,115	-		DZA65_RS14025	0.18	-2.2
3,008,115	-		DZA65_RS14025	0.18	-2.2
3,008,115	-		DZA65_RS14025	0.18	-2.8
3,008,161	-		DZA65_RS14025	0.29	+1.1
3,008,234	+		DZA65_RS14025	0.45	-1.2
3,008,251	+		DZA65_RS14025	0.49	-1.2
3,008,256	+		DZA65_RS14025	0.50	-1.2
3,008,256	+		DZA65_RS14025	0.50	-1.6
3,008,257	-		DZA65_RS14025	0.51	-2.4
3,008,264	+		DZA65_RS14025	0.52	-2.6
3,008,264	+		DZA65_RS14025	0.52	-1.3
3,008,264	+		DZA65_RS14025	0.52	-1.9
3,008,290	-		DZA65_RS14025	0.58	-2.6
3,008,290	-		DZA65_RS14025	0.58	+0.3
3,008,331	+		DZA65_RS14025	0.68	-2.2
3,008,331	+		DZA65_RS14025	0.68	+0.4
3,008,331	+		DZA65_RS14025	0.68	+0.7
3,008,332	-		DZA65_RS14025	0.68	-0.0
3,008,332	-				-1.6
3,008,332	-		DZA65_RS14025	0.68	+0.4
3,008,340	-		DZA65_RS14025	0.70	-0.3
3,008,436	+				-0.1
3,008,437	-				-0.6
3,008,467	-				+0.4
3,008,467	-				-0.2
3,008,494	+				+1.0
3,008,495	-				+1.7
3,008,518	+				-2.4
3,008,519	-				+1.0
3,008,530	+				+0.0
3,008,531	-				+0.7
3,008,531	-				-0.1
3,008,531	-				+1.7
3,008,531	-				-0.6
3,008,532	+				+0.3
3,008,532	+				-1.1
3,008,532	+				-3.1
3,008,532	+				-0.7
3,008,532	+				+0.9
3,008,533	-				-1.9
3,008,533	-				-0.4
3,008,533	-				-0.2
3,008,533	-				-1.9
3,008,533	-				-1.7
3,008,533	-				-0.2
3,008,536	+				-0.8
3,008,536	+				+0.1
3,008,536	+				-0.6
3,008,536	+				-0.2
3,008,537	-				-0.2
3,008,537	-				-0.4
3,008,537	-				-2.4
3,008,537	-				-0.6
3,008,539	+				-0.6
3,008,539	+				+0.3
3,008,540	-				-0.3
3,008,545	+				-1.6
3,008,545	+				+0.9
3,008,546	-				-0.7
3,008,546	-				-0.3
3,008,546	-				+0.1
3,008,547	+				-1.6
3,008,547	+				+1.4
3,008,547	+				-1.1
3,008,547	+				+0.5
3,008,547	+				+0.6
3,008,548	-				-1.4
3,008,548	-				-1.7
3,008,550	+				-2.2
3,008,550	+				-1.2
3,008,550	+				-0.3
3,008,550	+				-1.1
3,008,550	+				-0.6
3,008,550	+				-0.4
3,008,551	-				-0.3
3,008,551	-				-1.2
3,008,551	-				-2.7
3,008,551	-				+0.5
3,008,551	-				-0.8
3,008,551	-				-0.0
3,008,551	-				+0.2
3,008,554	+				-1.0
3,008,555	-				-1.2
3,008,555	-				-0.6
3,008,556	+				-0.6
3,008,557	-				-0.2
3,008,622	+				-0.6
3,008,622	+		DZA65_RS14030	0.17	-0.9
3,008,623	-		DZA65_RS14030	0.17	-1.6
3,008,623	-		DZA65_RS14030	0.17	-1.6
3,008,623	-		DZA65_RS14030	0.17	+1.0
3,008,623	-		DZA65_RS14030	0.17	+0.7
3,008,628	-		DZA65_RS14030	0.19	+0.7
3,008,636	-		DZA65_RS14030	0.21	-1.7
3,008,636	-		DZA65_RS14030	0.21	-3.2
3,008,671	-		DZA65_RS14030	0.29	+0.8
3,008,738	+		DZA65_RS14030	0.45	-1.2
3,008,763	+		DZA65_RS14030	0.51	-0.6
3,008,773	-		DZA65_RS14030	0.53	-0.3
3,008,777	+		DZA65_RS14030	0.54	-3.2
3,008,802	-		DZA65_RS14030	0.60	-1.0
3,008,856	+		DZA65_RS14030	0.73	-2.4
3,008,856	+		DZA65_RS14030	0.73	-0.1
3,008,857	-		DZA65_RS14030	0.73	-0.8
3,008,884	+		DZA65_RS14030	0.79	-2.2
3,008,884	+		DZA65_RS14030	0.79	-2.4
3,008,885	-		DZA65_RS14030	0.79	-0.4
3,008,885	-		DZA65_RS14030	0.79	-0.6
3,008,941	+				+0.2
3,008,942	-				+0.1
3,008,942	-				-1.5
3,008,942	-				-0.3
3,009,054	+				-2.4
3,009,096	+				-0.2
3,009,096	+				+0.9
3,009,096	+				+0.9
3,009,097	-				+2.2
3,009,234	+		DZA65_RS14035	0.12	-1.6
3,009,234	+		DZA65_RS14035	0.12	-0.7
3,009,235	-		DZA65_RS14035	0.12	+0.6
3,009,235	-		DZA65_RS14035	0.12	+0.6
3,009,329	+		DZA65_RS14035	0.16	-0.2
3,009,329	+		DZA65_RS14035	0.16	-1.2
3,009,330	-		DZA65_RS14035	0.17	+0.9
3,009,330	-		DZA65_RS14035	0.17	+0.1
3,009,330	-		DZA65_RS14035	0.17	-0.1
3,009,352	+		DZA65_RS14035	0.18	+0.8
3,009,352	+		DZA65_RS14035	0.18	+0.4
3,009,352	+		DZA65_RS14035	0.18	+0.0
3,009,353	-		DZA65_RS14035	0.18	-0.3
3,009,353	-		DZA65_RS14035	0.18	+0.4
3,009,407	+		DZA65_RS14035	0.20	-0.4
3,009,408	-		DZA65_RS14035	0.20	+1.9
3,009,408	-		DZA65_RS14035	0.20	-1.0
3,009,466	-		DZA65_RS14035	0.23	+0.4
3,009,485	+		DZA65_RS14035	0.24	+0.7
3,009,485	+		DZA65_RS14035	0.24	+0.3
3,009,486	-		DZA65_RS14035	0.24	+2.1
3,009,503	+		DZA65_RS14035	0.25	+0.9
3,009,504	-		DZA65_RS14035	0.25	+0.2
3,009,582	+		DZA65_RS14035	0.29	-0.5
3,009,583	-		DZA65_RS14035	0.29	+0.4
3,009,583	-		DZA65_RS14035	0.29	-3.2
3,009,583	-		DZA65_RS14035	0.29	+0.0
3,009,611	+		DZA65_RS14035	0.30	-0.8
3,009,629	+		DZA65_RS14035	0.31	-1.3
3,009,629	+		DZA65_RS14035	0.31	+0.0
3,009,629	+		DZA65_RS14035	0.31	+0.3
3,009,629	+		DZA65_RS14035	0.31	-0.6
3,009,630	-		DZA65_RS14035	0.31	+0.6
3,009,630	-		DZA65_RS14035	0.31	-0.5
3,009,630	-		DZA65_RS14035	0.31	+0.4
3,009,630	-		DZA65_RS14035	0.31	-0.3
3,009,630	-		DZA65_RS14035	0.31	+0.8
3,009,630	-		DZA65_RS14035	0.31	+0.6
3,009,630	-		DZA65_RS14035	0.31	+1.9
3,009,630	-		DZA65_RS14035	0.31	+0.4
3,009,631	+		DZA65_RS14035	0.31	+0.5
3,009,631	+		DZA65_RS14035	0.31	+0.1
3,009,631	+		DZA65_RS14035	0.31	+0.1
3,009,631	+		DZA65_RS14035	0.31	+0.7
3,009,631	+		DZA65_RS14035	0.31	-0.5
3,009,631	+				+2.1
3,009,631	+		DZA65_RS14035	0.31	+0.0
3,009,631	+		DZA65_RS14035	0.31	-0.1
3,009,631	+		DZA65_RS14035	0.31	-1.4
3,009,632	-		DZA65_RS14035	0.31	+0.6
3,009,632	-		DZA65_RS14035	0.31	+0.2
3,009,632	-		DZA65_RS14035	0.31	+0.4
3,009,632	-		DZA65_RS14035	0.31	+0.4
3,009,632	-		DZA65_RS14035	0.31	+0.7
3,009,747	-		DZA65_RS14035	0.36	-0.1
3,009,809	+		DZA65_RS14035	0.39	+2.7
3,009,809	+		DZA65_RS14035	0.39	-1.6
3,009,809	+		DZA65_RS14035	0.39	+0.0
3,009,809	+		DZA65_RS14035	0.39	+0.0
3,009,810	-		DZA65_RS14035	0.40	-1.3
3,009,814	+		DZA65_RS14035	0.40	-0.2
3,009,815	-		DZA65_RS14035	0.40	+1.3
3,009,849	-		DZA65_RS14035	0.41	+0.4
3,009,899	+		DZA65_RS14035	0.44	+0.6
3,009,966	+		DZA65_RS14035	0.47	-0.6
3,009,967	-		DZA65_RS14035	0.47	+0.4
3,009,967	-		DZA65_RS14035	0.47	+1.0
3,009,967	-		DZA65_RS14035	0.47	-0.4
3,009,967	-		DZA65_RS14035	0.47	+1.3
3,009,967	-		DZA65_RS14035	0.47	+1.5
3,009,967	-		DZA65_RS14035	0.47	-0.5
3,009,967	-		DZA65_RS14035	0.47	+1.4
3,009,967	-		DZA65_RS14035	0.47	+0.7
3,010,016	+		DZA65_RS14035	0.49	+0.2
3,010,018	-		DZA65_RS14035	0.49	+1.1
3,010,018	-		DZA65_RS14035	0.49	+0.4
3,010,110	+		DZA65_RS14035	0.54	+0.0
3,010,111	-		DZA65_RS14035	0.54	+1.2
3,010,145	+		DZA65_RS14035	0.56	-0.2
3,010,146	-		DZA65_RS14035	0.56	-0.6
3,010,146	-		DZA65_RS14035	0.56	+0.5
3,010,146	-		DZA65_RS14035	0.56	+0.6
3,010,151	+		DZA65_RS14035	0.56	-0.2
3,010,199	+		DZA65_RS14035	0.58	+0.1
3,010,199	+		DZA65_RS14035	0.58	+0.6
3,010,199	+		DZA65_RS14035	0.58	-0.2
3,010,200	-		DZA65_RS14035	0.58	+1.2
3,010,200	-		DZA65_RS14035	0.58	+0.3
3,010,200	-		DZA65_RS14035	0.58	+1.2
3,010,200	-		DZA65_RS14035	0.58	+1.1
3,010,200	-		DZA65_RS14035	0.58	+0.4
3,010,200	-		DZA65_RS14035	0.58	-0.2
3,010,211	+		DZA65_RS14035	0.59	+0.8
3,010,211	+		DZA65_RS14035	0.59	-1.8
3,010,269	+		DZA65_RS14035	0.61	-1.9
3,010,269	+		DZA65_RS14035	0.61	-0.2
3,010,346	+		DZA65_RS14035	0.65	-0.2
3,010,346	+		DZA65_RS14035	0.65	+0.3
3,010,346	+		DZA65_RS14035	0.65	-1.2
3,010,347	-		DZA65_RS14035	0.65	+0.1
3,010,347	-		DZA65_RS14035	0.65	+0.8
3,010,347	-		DZA65_RS14035	0.65	+0.4
3,010,347	-		DZA65_RS14035	0.65	-0.8
3,010,348	+		DZA65_RS14035	0.65	-0.4
3,010,348	+		DZA65_RS14035	0.65	-0.3
3,010,348	+		DZA65_RS14035	0.65	+0.4
3,010,348	+		DZA65_RS14035	0.65	+0.8
3,010,348	+		DZA65_RS14035	0.65	-0.8
3,010,348	+		DZA65_RS14035	0.65	-0.3
3,010,348	+		DZA65_RS14035	0.65	+0.8
3,010,348	+		DZA65_RS14035	0.65	+1.4
3,010,349	-		DZA65_RS14035	0.65	+0.1
3,010,349	-		DZA65_RS14035	0.65	-0.4
3,010,349	-		DZA65_RS14035	0.65	-0.4
3,010,349	-		DZA65_RS14035	0.65	-0.7
3,010,349	-		DZA65_RS14035	0.65	+0.1
3,010,376	+		DZA65_RS14035	0.67	+0.2
3,010,376	+		DZA65_RS14035	0.67	+0.4
3,010,376	+		DZA65_RS14035	0.67	-0.6
3,010,376	+		DZA65_RS14035	0.67	-1.4
3,010,376	+		DZA65_RS14035	0.67	-0.3
3,010,376	+		DZA65_RS14035	0.67	-0.6
3,010,377	-		DZA65_RS14035	0.67	+0.2
3,010,377	-				+2.7
3,010,377	-		DZA65_RS14035	0.67	+0.3
3,010,377	-		DZA65_RS14035	0.67	+1.4
3,010,418	+		DZA65_RS14035	0.69	-0.3
3,010,418	+		DZA65_RS14035	0.69	-0.8
3,010,418	+		DZA65_RS14035	0.69	-1.2
3,010,419	-		DZA65_RS14035	0.69	+1.0
3,010,467	-		DZA65_RS14035	0.71	+0.1
3,010,489	+		DZA65_RS14035	0.72	-0.5
3,010,489	+		DZA65_RS14035	0.72	-1.3
3,010,586	+		DZA65_RS14035	0.77	+0.2
3,010,587	-		DZA65_RS14035	0.77	+0.1
3,010,595	+		DZA65_RS14035	0.77	-0.3
3,010,596	-		DZA65_RS14035	0.77	+1.1
3,010,596	-		DZA65_RS14035	0.77	+0.1
3,010,596	-		DZA65_RS14035	0.77	-1.2
3,010,596	-		DZA65_RS14035	0.77	-0.9
3,010,596	-		DZA65_RS14035	0.77	+1.4
3,010,596	-		DZA65_RS14035	0.77	-1.4
3,010,652	+		DZA65_RS14035	0.80	+0.9
3,010,658	+		DZA65_RS14035	0.80	-0.3
3,010,658	+		DZA65_RS14035	0.80	-1.2
3,010,658	+		DZA65_RS14035	0.80	-1.2
3,010,659	-		DZA65_RS14035	0.80	+0.6
3,010,659	-		DZA65_RS14035	0.80	+0.7
3,010,659	-		DZA65_RS14035	0.80	+1.5
3,010,659	-		DZA65_RS14035	0.80	-0.2
3,010,679	+		DZA65_RS14035	0.81	+0.1
3,010,803	+		DZA65_RS14035	0.87	-0.1
3,010,803	+		DZA65_RS14035	0.87	+0.1
3,010,803	+		DZA65_RS14035	0.87	+0.4
3,010,804	-		DZA65_RS14035	0.87	-1.2
3,010,804	-		DZA65_RS14035	0.87	+0.1
3,010,804	-		DZA65_RS14035	0.87	-1.6
3,010,804	-		DZA65_RS14035	0.87	+0.6
3,010,804	-		DZA65_RS14035	0.87	-1.1
3,010,829	+		DZA65_RS14035	0.88	+1.4
3,010,829	+		DZA65_RS14035	0.88	+0.8
3,010,829	+		DZA65_RS14035	0.88	+0.3
3,010,830	-		DZA65_RS14035	0.88	-1.4
3,010,904	+				-0.2
3,010,904	+				-0.3
3,010,905	-				+0.1
3,010,922	+				+0.9
3,010,928	+				+0.8
3,010,929	-				+0.5
3,010,989	+				-1.0
3,010,989	+				+2.1
3,011,033	+				+0.8
3,011,033	+				+0.8
3,011,033	+				-1.0
3,011,034	-				-2.8
3,011,034	-				+0.7
3,011,034	-				+0.8
3,011,034	-				+0.6
3,011,066	+				-1.9
3,011,131	-				+1.2
3,011,137	+				+0.6
3,011,174	+				-0.3
3,011,174	+				+0.4
3,011,175	-				+1.5
3,011,207	+		DZA65_RS14040	0.12	+0.2
3,011,207	+		DZA65_RS14040	0.12	+0.2
3,011,207	+		DZA65_RS14040	0.12	-0.2
3,011,207	+		DZA65_RS14040	0.12	-1.2
3,011,207	+		DZA65_RS14040	0.12	+0.7
3,011,207	+		DZA65_RS14040	0.12	+0.5
3,011,207	+		DZA65_RS14040	0.12	-0.6
3,011,207	+		DZA65_RS14040	0.12	+0.4
3,011,207	+		DZA65_RS14040	0.12	+3.1
3,011,207	+		DZA65_RS14040	0.12	-2.2
3,011,207	+		DZA65_RS14040	0.12	+1.6
3,011,207	+		DZA65_RS14040	0.12	+1.4
3,011,207	+		DZA65_RS14040	0.12	+0.3
3,011,207	+		DZA65_RS14040	0.12	+0.2
3,011,208	-		DZA65_RS14040	0.12	-0.3
3,011,208	-		DZA65_RS14040	0.12	+0.1
3,011,208	-		DZA65_RS14040	0.12	+0.7
3,011,208	-		DZA65_RS14040	0.12	+1.2
3,011,208	-		DZA65_RS14040	0.12	+0.4
3,011,208	-		DZA65_RS14040	0.12	-0.5
3,011,208	-		DZA65_RS14040	0.12	+1.3
3,011,208	-		DZA65_RS14040	0.12	+0.4
3,011,208	-		DZA65_RS14040	0.12	+0.5
3,011,208	-		DZA65_RS14040	0.12	+0.6
3,011,209	+		DZA65_RS14040	0.12	-0.3
3,011,210	-		DZA65_RS14040	0.13	+1.6
3,011,210	-		DZA65_RS14040	0.13	-1.6
3,011,210	-		DZA65_RS14040	0.13	+0.4
3,011,210	-		DZA65_RS14040	0.13	+0.8
3,011,210	-		DZA65_RS14040	0.13	+0.6
3,011,210	-		DZA65_RS14040	0.13	+0.1
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