Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14010

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,005,338	-		DZA65_RS14000	0.19	+0.4
3,005,338	-		DZA65_RS14000	0.19	+1.2
3,005,349	+		DZA65_RS14000	0.21	-1.2
3,005,367	+		DZA65_RS14000	0.24	+0.2
3,005,367	+		DZA65_RS14000	0.24	+0.4
3,005,367	+		DZA65_RS14000	0.24	-1.1
3,005,367	+		DZA65_RS14000	0.24	-2.8
3,005,367	+		DZA65_RS14000	0.24	+1.6
3,005,367	+		DZA65_RS14000	0.24	-1.5
3,005,367	+		DZA65_RS14000	0.24	+1.7
3,005,367	+		DZA65_RS14000	0.24	+0.1
3,005,367	+		DZA65_RS14000	0.24	-0.7
3,005,367	+		DZA65_RS14000	0.24	+0.4
3,005,368	-		DZA65_RS14000	0.24	+0.4
3,005,368	-		DZA65_RS14000	0.24	-0.2
3,005,368	-		DZA65_RS14000	0.24	-0.3
3,005,368	-		DZA65_RS14000	0.24	+1.1
3,005,368	-		DZA65_RS14000	0.24	+0.5
3,005,368	-		DZA65_RS14000	0.24	-0.9
3,005,369	+		DZA65_RS14000	0.24	-0.7
3,005,369	+		DZA65_RS14000	0.24	-0.6
3,005,370	-		DZA65_RS14000	0.24	-0.1
3,005,370	-		DZA65_RS14000	0.24	+0.8
3,005,370	-		DZA65_RS14000	0.24	+1.1
3,005,391	+		DZA65_RS14000	0.27	+1.1
3,005,391	+		DZA65_RS14000	0.27	-1.8
3,005,392	-		DZA65_RS14000	0.27	+0.4
3,005,421	-		DZA65_RS14000	0.32	+1.0
3,005,421	-		DZA65_RS14000	0.32	+0.4
3,005,421	-		DZA65_RS14000	0.32	+0.7
3,005,458	-		DZA65_RS14000	0.37	+0.4
3,005,491	-		DZA65_RS14000	0.42	+0.4
3,005,491	-		DZA65_RS14000	0.42	+0.3
3,005,491	-		DZA65_RS14000	0.42	-0.7
3,005,491	-		DZA65_RS14000	0.42	+0.9
3,005,522	-		DZA65_RS14000	0.47	+1.6
3,005,522	-		DZA65_RS14000	0.47	+0.2
3,005,693	-		DZA65_RS14000	0.72	-0.3
3,005,693	-				+3.4
3,005,784	+		DZA65_RS14000	0.86	-0.3
3,005,784	+		DZA65_RS14000	0.86	+0.2
3,005,785	-		DZA65_RS14000	0.86	-0.1
3,005,785	-		DZA65_RS14000	0.86	+1.2
3,005,785	-		DZA65_RS14000	0.86	+0.1
3,005,791	+		DZA65_RS14000	0.87	+0.4
3,005,805	+		DZA65_RS14000	0.89	-0.9
3,005,805	+		DZA65_RS14000	0.89	-0.6
3,005,805	+		DZA65_RS14000	0.89	+0.1
3,005,805	+		DZA65_RS14000	0.89	-2.2
3,005,805	+		DZA65_RS14000	0.89	+2.4
3,005,805	+		DZA65_RS14000	0.89	-0.6
3,005,805	+		DZA65_RS14000	0.89	+0.6
3,005,805	+		DZA65_RS14000	0.89	-0.9
3,005,806	-		DZA65_RS14000	0.89	-0.3
3,005,806	-		DZA65_RS14000	0.89	-0.1
3,005,806	-		DZA65_RS14000	0.89	+0.4
3,005,806	-		DZA65_RS14000	0.89	+1.4
3,005,841	+				-1.8
3,005,841	+				-1.2
3,005,841	+				-0.9
3,005,842	-				+0.2
3,005,842	-				+0.0
3,005,844	+				+0.6
3,005,844	+				-0.2
3,005,845	-				+0.5
3,005,845	-				+1.5
3,005,845	-				-0.0
3,005,845	-				+1.1
3,005,845	-				+0.4
3,005,874	+				-0.3
3,005,894	+				+0.5
3,005,894	+				-0.1
3,005,895	-				+0.4
3,005,908	+				-0.4
3,005,909	-				-0.1
3,005,937	+		DZA65_RS14005	0.11	-0.5
3,005,937	+		DZA65_RS14005	0.11	-1.6
3,005,937	+		DZA65_RS14005	0.11	-1.8
3,005,937	+		DZA65_RS14005	0.11	-2.6
3,005,963	+		DZA65_RS14005	0.17	-0.8
3,005,964	-		DZA65_RS14005	0.18	-1.1
3,006,029	+		DZA65_RS14005	0.34	-1.8
3,006,029	+		DZA65_RS14005	0.34	-0.2
3,006,029	+		DZA65_RS14005	0.34	+0.4
3,006,029	+		DZA65_RS14005	0.34	+0.4
3,006,030	-		DZA65_RS14005	0.34	+0.2
3,006,030	-		DZA65_RS14005	0.34	-0.3
3,006,065	+		DZA65_RS14005	0.42	+0.8
3,006,065	+		DZA65_RS14005	0.42	+0.2
3,006,065	+		DZA65_RS14005	0.42	-0.9
3,006,065	+		DZA65_RS14005	0.42	-0.8
3,006,065	+		DZA65_RS14005	0.42	-0.2
3,006,282	+				-1.7
3,006,285	+				-0.4
3,006,286	-				+0.4
3,006,286	-				+1.3
3,006,286	-				+1.1
3,006,286	-				-0.6
3,006,289	+				-0.4
3,006,290	-				+0.4
3,006,311	+				-2.4
3,006,311	+				+0.4
3,006,311	+				-1.4
3,006,311	+				+0.4
3,006,311	+				-0.6
3,006,311	+				+0.1
3,006,311	+				-0.6
3,006,311	+				-0.8
3,006,311	+				+0.9
3,006,311	+				-2.7
3,006,312	-				-0.9
3,006,312	-				-1.8
3,006,312	-				-1.9
3,006,312	-				+0.9
3,006,312	-				+1.4
3,006,312	-				+0.4
3,006,312	-				-0.2
3,006,312	-				+0.7
3,006,312	-				+1.4
3,006,312	-				+0.2
3,006,312	-				-0.1
3,006,313	+				-0.9
3,006,313	+				-0.4
3,006,313	+				-1.0
3,006,313	+				+1.0
3,006,313	+				-1.2
3,006,313	+				+0.3
3,006,313	+				+0.9
3,006,313	+				-0.5
3,006,313	+				+0.4
3,006,313	+				-0.3
3,006,313	+				+1.8
3,006,313	+				-0.1
3,006,314	-				+0.4
3,006,314	-				+0.9
3,006,314	-				-0.6
3,006,314	-				+0.8
3,006,314	-				-0.6
3,006,314	-				+0.0
3,006,314	-				+0.1
3,006,314	-				-0.5
3,006,314	-				+0.8
3,006,332	+				+0.3
3,006,352	+				+0.4
3,006,404	+		DZA65_RS14010	0.17	-1.6
3,006,404	+		DZA65_RS14010	0.17	-0.5
3,006,404	+		DZA65_RS14010	0.17	+2.2
3,006,405	-		DZA65_RS14010	0.18	+0.7
3,006,405	-		DZA65_RS14010	0.18	-0.6
3,006,405	-		DZA65_RS14010	0.18	-0.6
3,006,405	-		DZA65_RS14010	0.18	+0.8
3,006,405	-		DZA65_RS14010	0.18	+0.2
3,006,405	-		DZA65_RS14010	0.18	-0.5
3,006,405	-		DZA65_RS14010	0.18	-1.6
3,006,405	-		DZA65_RS14010	0.18	+1.3
3,006,433	-		DZA65_RS14010	0.24	+0.6
3,006,433	-		DZA65_RS14010	0.24	+0.1
3,006,492	-		DZA65_RS14010	0.38	+2.0
3,006,517	+		DZA65_RS14010	0.44	+0.8
3,006,517	+		DZA65_RS14010	0.44	+1.6
3,006,517	+		DZA65_RS14010	0.44	-1.8
3,006,517	+		DZA65_RS14010	0.44	+0.6
3,006,518	-		DZA65_RS14010	0.45	+0.7
3,006,742	-				+1.0
3,006,742	-				+1.0
3,006,766	+				+1.0
3,006,783	+				-0.0
3,006,788	+				-0.2
3,006,788	+				+0.8
3,006,820	+				+1.1
3,006,820	+				-0.0
3,006,821	-				-0.2
3,006,821	-				+0.5
3,006,826	+				-0.0
3,006,826	+				-1.1
3,006,827	-				-0.2
3,006,827	-				+0.0
3,006,827	-				-0.2
3,006,839	+				-0.9
3,006,839	+				+0.3
3,006,839	+				-0.0
3,006,843	+				-0.2
3,006,843	+				-1.6
3,006,843	+				+0.6
3,006,843	+				-0.1
3,006,844	-				+0.4
3,006,844	-				+0.7
3,006,844	-				+0.8
3,006,844	-				-0.6
3,006,844	-				-0.8
3,006,844	-				+0.6
3,006,851	+				+0.4
3,006,851	+				-0.4
3,006,857	+				-0.1
3,006,857	+				-0.8
3,006,857	+				-1.8
3,006,865	+				+0.9
3,006,865	+				+0.1
3,006,865	+				+0.8
3,006,865	+				+0.4
3,006,871	+				-0.1
3,006,871	+				-0.8
3,006,910	+				+1.4
3,006,940	+				-0.7
3,006,940	+				+0.0
3,006,940	+				+1.2
3,006,940	+				+3.2
3,006,941	-				-0.0
3,006,941	-				+1.5
3,006,946	+				-0.1
3,006,956	-				+0.4
3,007,028	+		DZA65_RS14015	0.16	+1.4
3,007,035	-		DZA65_RS14015	0.17	-0.1
3,007,049	+		DZA65_RS14015	0.20	+0.0
3,007,050	-		DZA65_RS14015	0.20	+0.8
3,007,050	-		DZA65_RS14015	0.20	+0.7
3,007,055	+		DZA65_RS14015	0.20	+1.0
3,007,055	+		DZA65_RS14015	0.20	-0.4
3,007,215	+		DZA65_RS14015	0.44	+1.3
3,007,215	+		DZA65_RS14015	0.44	-0.3
3,007,215	+		DZA65_RS14015	0.44	+1.2
3,007,215	+		DZA65_RS14015	0.44	-1.6
3,007,215	+		DZA65_RS14015	0.44	+0.1
3,007,215	+		DZA65_RS14015	0.44	+0.7
3,007,215	+		DZA65_RS14015	0.44	-0.6
3,007,215	+		DZA65_RS14015	0.44	+1.5
3,007,215	+		DZA65_RS14015	0.44	+0.6
3,007,215	+		DZA65_RS14015	0.44	+0.9
3,007,215	+		DZA65_RS14015	0.44	+1.1
3,007,216	-		DZA65_RS14015	0.45	-0.2
3,007,216	-		DZA65_RS14015	0.45	+0.3
3,007,216	-		DZA65_RS14015	0.45	-0.6
3,007,216	-		DZA65_RS14015	0.45	+0.4
3,007,216	-		DZA65_RS14015	0.45	-0.4
3,007,216	-		DZA65_RS14015	0.45	-0.1
3,007,216	-		DZA65_RS14015	0.45	+0.5
3,007,216	-		DZA65_RS14015	0.45	-1.2
3,007,359	-		DZA65_RS14015	0.66	+0.6
3,007,376	+		DZA65_RS14015	0.68	+2.1
3,007,376	+		DZA65_RS14015	0.68	+1.1
3,007,376	+		DZA65_RS14015	0.68	+0.9
3,007,376	+		DZA65_RS14015	0.68	+0.4
3,007,376	+		DZA65_RS14015	0.68	+0.8
3,007,376	+		DZA65_RS14015	0.68	+0.6
3,007,376	+		DZA65_RS14015	0.68	+0.3
3,007,376	+		DZA65_RS14015	0.68	+1.5
3,007,376	+		DZA65_RS14015	0.68	+0.2
3,007,376	+		DZA65_RS14015	0.68	-0.1
3,007,377	-		DZA65_RS14015	0.69	-1.2
3,007,377	-		DZA65_RS14015	0.69	-0.1
3,007,377	-		DZA65_RS14015	0.69	+0.7
3,007,377	-		DZA65_RS14015	0.69	+2.0
3,007,377	-		DZA65_RS14015	0.69	+0.4
3,007,377	-		DZA65_RS14015	0.69	-1.6
3,007,377	-		DZA65_RS14015	0.69	+0.4
3,007,379	+		DZA65_RS14015	0.69	-0.2
3,007,379	+		DZA65_RS14015	0.69	+0.6
3,007,389	-		DZA65_RS14015	0.70	+0.6
3,007,389	-		DZA65_RS14015	0.70	-0.8
3,007,394	+		DZA65_RS14015	0.71	+1.4
3,007,457	+				-0.6
3,007,568	+				-1.6
3,007,568	+				+0.4
3,007,569	-				+0.8
3,007,597	+				-1.4
3,007,597	+				-0.1
3,007,597	+				+0.1
3,007,597	+				+0.1
3,007,623	+				-0.0
3,007,623	+				-0.4
3,007,623	+				-1.0
3,007,623	+				+0.2
3,007,623	+				-0.6
3,007,623	+				-0.6
3,007,623	+				+0.4
3,007,623	+				-0.7
3,007,627	+				+0.2
3,007,627	+				+0.0
3,007,627	+				+1.0
3,007,640	+				-2.1
3,007,688	+				+0.6
3,007,705	-				+0.1