Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12775

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,732,728	+				+1.0
2,732,729	-				+0.6
2,732,729	-				-0.0
2,732,729	-				+0.3
2,732,729	-				+0.8
2,732,729	-				+0.3
2,732,784	+				+0.9
2,732,784	+				+0.7
2,732,784	+				+1.2
2,732,784	+				+0.4
2,732,785	-				+0.2
2,732,785	-				-0.1
2,732,785	-				+1.1
2,732,785	-				+1.1
2,732,809	-				-0.4
2,732,853	-				+0.6
2,732,916	-		DZA65_RS12770	0.15	-2.3
2,732,951	+		DZA65_RS12770	0.23	+0.1
2,732,951	+		DZA65_RS12770	0.23	-2.0
2,732,951	+		DZA65_RS12770	0.23	-0.3
2,732,952	-		DZA65_RS12770	0.23	-0.4
2,732,984	+		DZA65_RS12770	0.30	+0.6
2,733,281	+				-0.0
2,733,297	+				-0.3
2,733,297	+				+1.2
2,733,298	-				-0.1
2,733,298	-				-0.1
2,733,422	-				+1.8
2,733,453	+				-2.5
2,733,486	-				+1.0
2,733,486	-				+0.7
2,733,486	-				-0.7
2,733,486	-				+0.3
2,733,487	+				+0.5
2,733,487	+				-1.6
2,733,487	+				-0.2
2,733,580	+				-0.0
2,733,580	+				+1.1
2,733,580	+				+0.8
2,733,580	+				+0.7
2,733,581	-				+1.6
2,733,581	-				+1.1
2,733,587	-				+1.2
2,733,640	+				-0.3
2,733,640	+				-0.7
2,733,640	+				+1.9
2,733,640	+				-0.3
2,733,641	-				+0.1
2,733,641	-				+0.8
2,733,641	-				+2.6
2,733,641	-				-0.3
2,733,641	-				+0.6
2,733,650	+				-1.1
2,733,651	-				+0.8
2,733,665	+				+0.9
2,733,665	+				+0.7
2,733,665	+				+0.6
2,733,666	-				+0.7
2,733,666	-				-0.4
2,733,666	-				-0.0
2,733,666	-				+0.3
2,733,932	+		DZA65_RS12775	0.35	-0.1
2,733,933	-		DZA65_RS12775	0.35	+0.5
2,733,965	-		DZA65_RS12775	0.39	+1.1
2,733,965	-		DZA65_RS12775	0.39	-0.0
2,733,976	-		DZA65_RS12775	0.41	+0.9
2,733,996	+		DZA65_RS12775	0.43	+2.9
2,733,996	+		DZA65_RS12775	0.43	-1.7
2,734,105	-		DZA65_RS12775	0.56	+1.2
2,734,212	+		DZA65_RS12775	0.69	+0.9
2,734,219	+		DZA65_RS12775	0.70	+1.0
2,734,333	-		DZA65_RS12775	0.84	+0.3
2,734,333	-		DZA65_RS12775	0.84	+0.6
2,734,495	+				+0.1
2,734,508	-				-0.4
2,734,574	+				-1.7
2,734,586	-				+0.6
2,734,595	-				-0.3
2,734,611	+				-0.2
2,734,611	+				+0.5
2,734,611	+				-0.7
2,734,611	+				-0.1
2,734,611	+				-0.5
2,734,612	-				-0.8
2,734,626	+				+0.1
2,734,626	+				+0.6
2,734,627	-				-0.4
2,734,627	-				-0.5
2,734,627	-				-1.1
2,734,635	+				+0.4
2,734,635	+				-0.5
2,734,636	-				-1.0
2,734,703	+				+0.3
2,734,733	+				+0.1
2,734,733	+				+0.3
2,734,738	+				-0.2
2,734,738	+				-1.0
2,734,739	-				+0.0
2,734,739	-				+0.1
2,734,739	-				+0.6
2,734,743	+				-1.1
2,734,744	-				+0.3
2,734,744	-				-1.5
2,734,746	-				-0.5
2,734,746	-				+0.2
2,734,751	+				+0.3
2,734,752	-				+0.2
2,734,752	-				+0.3
2,734,769	+				+1.1
2,734,775	+				+0.3
2,734,776	-				+2.6
2,734,776	-				-0.3
2,734,776	-				-0.4
2,734,801	-				-0.4
2,734,887	+				-0.6
2,734,888	-				-1.5
2,734,926	+		DZA65_RS12780	0.10	-0.8
2,734,927	-		DZA65_RS12780	0.10	+0.0
2,734,927	-		DZA65_RS12780	0.10	+0.2
2,734,953	+		DZA65_RS12780	0.12	+0.7
2,734,953	+		DZA65_RS12780	0.12	+0.1
2,734,954	-		DZA65_RS12780	0.12	+0.6
2,734,954	-		DZA65_RS12780	0.12	+0.8
2,734,954	-		DZA65_RS12780	0.12	+1.2
2,734,975	+		DZA65_RS12780	0.13	-1.0
2,734,976	-				+1.3
2,734,976	-		DZA65_RS12780	0.14	-1.5
2,734,997	+				+0.7
2,734,997	+		DZA65_RS12780	0.15	+0.6
2,734,997	+		DZA65_RS12780	0.15	+2.1
2,734,998	-		DZA65_RS12780	0.15	-0.7
2,734,998	-		DZA65_RS12780	0.15	-1.5
2,734,998	-		DZA65_RS12780	0.15	-2.1
2,734,998	-		DZA65_RS12780	0.15	-0.0
2,734,998	-		DZA65_RS12780	0.15	-0.2
2,735,003	+		DZA65_RS12780	0.15	-0.4
2,735,003	+		DZA65_RS12780	0.15	+0.7
2,735,003	+		DZA65_RS12780	0.15	+1.2
2,735,003	+		DZA65_RS12780	0.15	-1.3
2,735,003	+		DZA65_RS12780	0.15	-1.3
2,735,003	+		DZA65_RS12780	0.15	+0.5
2,735,004	-		DZA65_RS12780	0.15	-0.1
2,735,006	-		DZA65_RS12780	0.15	-0.8
2,735,006	-		DZA65_RS12780	0.15	-0.3
2,735,037	+		DZA65_RS12780	0.17	-1.5
2,735,037	+		DZA65_RS12780	0.17	+1.6
2,735,037	+		DZA65_RS12780	0.17	+0.6
2,735,038	-		DZA65_RS12780	0.18	+2.5
2,735,038	-		DZA65_RS12780	0.18	+0.3
2,735,038	-		DZA65_RS12780	0.18	-0.0
2,735,038	-		DZA65_RS12780	0.18	-0.4
2,735,038	-		DZA65_RS12780	0.18	-0.2
2,735,038	-		DZA65_RS12780	0.18	-0.3
2,735,038	-		DZA65_RS12780	0.18	-1.1
2,735,049	+		DZA65_RS12780	0.18	-0.0
2,735,049	+		DZA65_RS12780	0.18	-0.7
2,735,049	+		DZA65_RS12780	0.18	-1.3
2,735,049	+		DZA65_RS12780	0.18	-0.6
2,735,049	+		DZA65_RS12780	0.18	-0.7
2,735,050	-		DZA65_RS12780	0.18	+0.3
2,735,050	-		DZA65_RS12780	0.18	+0.5
2,735,077	+		DZA65_RS12780	0.20	-0.0
2,735,077	+		DZA65_RS12780	0.20	-0.6
2,735,077	+		DZA65_RS12780	0.20	+0.3
2,735,077	+		DZA65_RS12780	0.20	+0.3
2,735,078	-		DZA65_RS12780	0.20	+0.3
2,735,078	-		DZA65_RS12780	0.20	+1.1
2,735,078	-		DZA65_RS12780	0.20	+2.1
2,735,078	-		DZA65_RS12780	0.20	-0.3
2,735,283	+		DZA65_RS12780	0.33	-0.7
2,735,284	-		DZA65_RS12780	0.33	-0.8
2,735,317	+		DZA65_RS12780	0.36	+0.9
2,735,362	+				+1.5
2,735,393	-		DZA65_RS12780	0.40	-0.7
2,735,410	+		DZA65_RS12780	0.42	-0.7
2,735,410	+		DZA65_RS12780	0.42	+0.6
2,735,410	+		DZA65_RS12780	0.42	+0.5
2,735,411	-		DZA65_RS12780	0.42	-0.9
2,735,411	-		DZA65_RS12780	0.42	+1.3
2,735,411	-		DZA65_RS12780	0.42	+0.1
2,735,413	+		DZA65_RS12780	0.42	-0.3
2,735,413	+		DZA65_RS12780	0.42	-1.2
2,735,414	-		DZA65_RS12780	0.42	-1.7
2,735,414	-		DZA65_RS12780	0.42	-1.0
2,735,414	-		DZA65_RS12780	0.42	-1.0
2,735,431	+		DZA65_RS12780	0.43	-0.1
2,735,431	+		DZA65_RS12780	0.43	-0.7
2,735,431	+		DZA65_RS12780	0.43	-0.1
2,735,432	-		DZA65_RS12780	0.43	+1.8
2,735,432	-		DZA65_RS12780	0.43	+0.7
2,735,434	+		DZA65_RS12780	0.43	-1.4
2,735,434	+		DZA65_RS12780	0.43	-0.3
2,735,435	-		DZA65_RS12780	0.43	+0.2
2,735,435	-		DZA65_RS12780	0.43	+2.1
2,735,435	-		DZA65_RS12780	0.43	-0.4
2,735,435	-		DZA65_RS12780	0.43	-0.8
2,735,435	-		DZA65_RS12780	0.43	-0.6
2,735,435	-		DZA65_RS12780	0.43	-2.3
2,735,435	-		DZA65_RS12780	0.43	+1.3
2,735,435	-		DZA65_RS12780	0.43	-0.6
2,735,435	-		DZA65_RS12780	0.43	-1.3
2,735,435	-		DZA65_RS12780	0.43	+0.3
2,735,435	-		DZA65_RS12780	0.43	+0.1
2,735,451	-				+0.9