Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12760

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,729,710	+		DZA65_RS12750	0.86	-1.9
2,729,711	-		DZA65_RS12750	0.86	-0.3
2,729,997	-				-1.3
2,730,179	-		DZA65_RS12755	0.40	-0.3
2,730,179	-		DZA65_RS12755	0.40	+2.6
2,730,179	-		DZA65_RS12755	0.40	+0.6
2,730,250	+		DZA65_RS12755	0.57	+0.3
2,730,366	+		DZA65_RS12755	0.84	-0.7
2,730,373	+		DZA65_RS12755	0.85	-0.5
2,730,374	-		DZA65_RS12755	0.85	-1.3
2,730,375	+		DZA65_RS12755	0.86	+1.1
2,730,375	+		DZA65_RS12755	0.86	-2.1
2,730,493	+				+1.7
2,730,493	+				+0.3
2,730,493	+				-1.5
2,730,493	+				+2.3
2,730,494	-				-0.3
2,730,500	+				+0.3
2,730,500	+				+1.1
2,730,501	-				+1.1
2,730,501	-				+0.5
2,730,501	-				+0.3
2,730,501	-				+0.1
2,730,513	+				+0.8
2,730,513	+				+0.2
2,730,513	+				+1.3
2,730,513	+				+0.0
2,730,518	+				-0.1
2,730,519	-				+1.1
2,730,519	-				+0.2
2,730,519	-				+0.2
2,730,519	-				-0.0
2,730,519	-				-0.4
2,730,520	+				+0.6
2,730,520	+				+1.0
2,730,520	+				-0.9
2,730,520	+				-0.0
2,730,520	+				+0.0
2,730,520	+				+1.4
2,730,520	+				+0.3
2,730,520	+				-1.3
2,730,521	-				-1.2
2,730,521	-				+0.2
2,730,521	-				+0.8
2,730,521	-				+0.7
2,730,521	-				-0.2
2,730,521	-				-0.1
2,730,521	-				-0.0
2,730,521	-				+1.3
2,730,521	-				-0.4
2,730,523	+				-0.7
2,730,523	+				-1.0
2,730,523	+				+1.3
2,730,523	+				+0.5
2,730,524	-				+1.3
2,730,524	-				+0.6
2,730,524	-				+0.4
2,730,524	-				-0.3
2,730,524	-				+0.3
2,730,524	-				+0.6
2,730,524	-				+1.2
2,730,524	-				+0.6
2,730,524	-				-0.5
2,730,524	-				-0.1
2,730,532	+				+0.3
2,730,532	+				-0.3
2,730,532	+				+0.6
2,730,539	-				+0.3
2,730,539	-				-0.1
2,730,539	-				+1.3
2,730,544	+				-0.3
2,730,544	+				-1.7
2,730,544	+				-0.3
2,730,544	+				+1.0
2,730,545	-				+0.3
2,730,545	-				+0.8
2,730,545	-				+2.1
2,730,545	-				+1.5
2,730,545	-				+0.6
2,730,545	-				+1.6
2,730,545	-				+0.3
2,730,545	-				-0.9
2,730,545	-				-0.5
2,730,545	-				-1.5
2,730,545	-				+0.4
2,730,602	-				+1.2
2,730,646	+				+0.8
2,730,646	+				-0.0
2,730,649	+				+0.2
2,730,649	+				-0.3
2,730,649	+				+0.6
2,730,650	-				+0.0
2,730,681	+				+0.7
2,730,734	-				+0.5
2,730,750	+				+1.1
2,730,750	+				+0.8
2,730,751	-		DZA65_RS12760	0.10	-0.9
2,730,751	-		DZA65_RS12760	0.10	-0.9
2,730,751	-		DZA65_RS12760	0.10	-1.7
2,730,854	+		DZA65_RS12760	0.24	-0.5
2,730,875	+		DZA65_RS12760	0.27	+0.7
2,730,876	-		DZA65_RS12760	0.27	-2.1
2,730,876	-		DZA65_RS12760	0.27	-0.7
2,730,876	-		DZA65_RS12760	0.27	-0.8
2,730,876	-		DZA65_RS12760	0.27	-1.3
2,730,876	-		DZA65_RS12760	0.27	-0.8
2,730,902	+				+0.9
2,730,903	-		DZA65_RS12760	0.31	-0.6
2,730,941	+		DZA65_RS12760	0.36	-0.0
2,730,967	+		DZA65_RS12760	0.39	+0.3
2,730,967	+		DZA65_RS12760	0.39	-0.4
2,730,967	+		DZA65_RS12760	0.39	-0.7
2,730,967	+		DZA65_RS12760	0.39	-0.3
2,730,968	-		DZA65_RS12760	0.39	-0.9
2,730,968	-		DZA65_RS12760	0.39	-1.3
2,730,968	-		DZA65_RS12760	0.39	-0.0
2,730,968	-		DZA65_RS12760	0.39	-0.7
2,730,968	-		DZA65_RS12760	0.39	+0.1
2,730,968	-		DZA65_RS12760	0.39	-0.9
2,730,968	-		DZA65_RS12760	0.39	-1.5
2,730,968	-		DZA65_RS12760	0.39	-0.7
2,730,968	-		DZA65_RS12760	0.39	+0.7
2,730,969	+		DZA65_RS12760	0.39	+1.0
2,730,970	-		DZA65_RS12760	0.40	+0.8
2,730,970	-		DZA65_RS12760	0.40	-0.0
2,730,970	-		DZA65_RS12760	0.40	+0.3
2,730,970	-		DZA65_RS12760	0.40	+0.3
2,730,970	-		DZA65_RS12760	0.40	-0.8
2,730,970	-		DZA65_RS12760	0.40	-0.9
2,730,996	-		DZA65_RS12760	0.43	+1.3
2,731,031	-				-0.7
2,731,031	-		DZA65_RS12760	0.48	+0.2
2,731,095	+		DZA65_RS12760	0.56	-0.2
2,731,095	+		DZA65_RS12760	0.56	-0.3
2,731,095	+		DZA65_RS12760	0.56	-0.6
2,731,095	+		DZA65_RS12760	0.56	-0.4
2,731,095	+		DZA65_RS12760	0.56	+0.1
2,731,095	+		DZA65_RS12760	0.56	-0.5
2,731,096	-		DZA65_RS12760	0.56	-1.1
2,731,096	-		DZA65_RS12760	0.56	-0.3
2,731,164	+		DZA65_RS12760	0.66	-1.5
2,731,164	+		DZA65_RS12760	0.66	+0.3
2,731,164	+		DZA65_RS12760	0.66	-0.1
2,731,164	+		DZA65_RS12760	0.66	-1.4
2,731,164	+		DZA65_RS12760	0.66	+1.0
2,731,165	-		DZA65_RS12760	0.66	-0.1
2,731,165	-		DZA65_RS12760	0.66	+0.7
2,731,165	-		DZA65_RS12760	0.66	+1.3
2,731,270	+		DZA65_RS12760	0.80	+1.4
2,731,271	-		DZA65_RS12760	0.80	+1.3
2,731,287	+		DZA65_RS12760	0.82	+0.1
2,731,287	+		DZA65_RS12760	0.82	-0.0
2,731,287	+		DZA65_RS12760	0.82	+0.3
2,731,288	-		DZA65_RS12760	0.82	-0.4
2,731,288	-		DZA65_RS12760	0.82	+0.3
2,731,290	+		DZA65_RS12760	0.83	-2.1
2,731,291	-		DZA65_RS12760	0.83	-0.0
2,731,291	-		DZA65_RS12760	0.83	+0.6
2,731,291	-		DZA65_RS12760	0.83	+0.1
2,731,328	-		DZA65_RS12760	0.88	-1.3
2,731,378	+				+1.5
2,731,378	+				-1.5
2,731,379	-				+0.9
2,731,495	-				+0.5
2,731,495	-				+1.1
2,731,495	-				-0.7
2,731,557	+		DZA65_RS12765	0.10	+0.2
2,731,558	-				-0.3
2,731,629	-		DZA65_RS12765	0.16	-0.7
2,731,629	-		DZA65_RS12765	0.16	+0.3
2,731,645	+		DZA65_RS12765	0.17	-0.6
2,731,645	+		DZA65_RS12765	0.17	-0.1
2,731,646	-		DZA65_RS12765	0.17	-1.3
2,731,669	-		DZA65_RS12765	0.19	-0.8
2,731,734	+		DZA65_RS12765	0.23	-1.0
2,731,734	+		DZA65_RS12765	0.23	+0.1
2,731,734	+		DZA65_RS12765	0.23	-0.4
2,731,734	+		DZA65_RS12765	0.23	+1.4
2,731,734	+		DZA65_RS12765	0.23	+0.3
2,731,734	+		DZA65_RS12765	0.23	-1.0
2,731,735	-		DZA65_RS12765	0.24	-1.0
2,731,735	-		DZA65_RS12765	0.24	-0.6
2,731,735	-		DZA65_RS12765	0.24	-0.3
2,731,767	+		DZA65_RS12765	0.26	+1.3
2,731,767	+		DZA65_RS12765	0.26	+0.4
2,731,767	+		DZA65_RS12765	0.26	-0.8
2,731,767	+		DZA65_RS12765	0.26	-0.1
2,731,767	+		DZA65_RS12765	0.26	-0.7
2,731,767	+		DZA65_RS12765	0.26	+0.3
2,731,767	+		DZA65_RS12765	0.26	+0.1
2,731,767	+		DZA65_RS12765	0.26	+0.6
2,731,767	+		DZA65_RS12765	0.26	+0.8
2,731,768	-		DZA65_RS12765	0.26	-0.0
2,731,768	-		DZA65_RS12765	0.26	-0.3
2,731,768	-		DZA65_RS12765	0.26	+0.5
2,731,768	-		DZA65_RS12765	0.26	-1.4
2,731,768	-		DZA65_RS12765	0.26	+2.3
2,731,768	-		DZA65_RS12765	0.26	+0.2
2,731,794	+		DZA65_RS12765	0.28	+0.6
2,731,795	-		DZA65_RS12765	0.28	-1.3
2,731,973	+		DZA65_RS12765	0.41	-1.6
2,731,976	+		DZA65_RS12765	0.41	-1.3
2,731,976	+		DZA65_RS12765	0.41	-0.7
2,731,976	+		DZA65_RS12765	0.41	+0.2
2,731,976	+		DZA65_RS12765	0.41	+0.5
2,731,976	+		DZA65_RS12765	0.41	-1.1
2,731,976	+		DZA65_RS12765	0.41	+0.9
2,731,976	+		DZA65_RS12765	0.41	-0.4
2,731,976	+		DZA65_RS12765	0.41	+0.3
2,731,977	-		DZA65_RS12765	0.41	+0.2
2,731,977	-		DZA65_RS12765	0.41	-0.0
2,731,977	-		DZA65_RS12765	0.41	-0.5
2,731,977	-		DZA65_RS12765	0.41	+1.3
2,732,042	+		DZA65_RS12765	0.46	+1.1
2,732,200	+		DZA65_RS12765	0.58	+1.1
2,732,208	+		DZA65_RS12765	0.58	-2.0
2,732,208	+		DZA65_RS12765	0.58	-0.2
2,732,208	+		DZA65_RS12765	0.58	+1.3
2,732,208	+		DZA65_RS12765	0.58	-0.4
2,732,208	+		DZA65_RS12765	0.58	-0.9
2,732,209	-		DZA65_RS12765	0.58	-0.3
2,732,209	-		DZA65_RS12765	0.58	-0.2
2,732,209	-		DZA65_RS12765	0.58	-0.2
2,732,312	+		DZA65_RS12765	0.66	+0.7
2,732,332	+		DZA65_RS12765	0.68	-0.0
2,732,333	-		DZA65_RS12765	0.68	+0.9
2,732,342	+		DZA65_RS12765	0.68	+0.3
2,732,345	+		DZA65_RS12765	0.69	+0.2
2,732,345	+		DZA65_RS12765	0.69	-0.1
2,732,346	-		DZA65_RS12765	0.69	+0.5
2,732,346	-		DZA65_RS12765	0.69	-0.9