Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12530

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,684,567	-		DZA65_RS12525	0.66	+1.0
2,684,567	-		DZA65_RS12525	0.66	-1.0
2,684,681	+		DZA65_RS12525	0.71	+2.0
2,684,681	+		DZA65_RS12525	0.71	+2.1
2,684,681	+		DZA65_RS12525	0.71	-0.0
2,684,682	-		DZA65_RS12525	0.71	+0.5
2,684,682	-		DZA65_RS12525	0.71	+1.2
2,684,682	-		DZA65_RS12525	0.71	-0.1
2,684,682	-		DZA65_RS12525	0.71	+0.3
2,684,682	-		DZA65_RS12525	0.71	-0.0
2,684,731	+		DZA65_RS12525	0.73	+0.6
2,684,731	+		DZA65_RS12525	0.73	+0.8
2,684,731	+		DZA65_RS12525	0.73	+0.4
2,684,732	-		DZA65_RS12525	0.73	-1.7
2,684,732	-		DZA65_RS12525	0.73	+2.3
2,684,732	-		DZA65_RS12525	0.73	+0.1
2,684,735	+		DZA65_RS12525	0.73	+0.4
2,684,735	+		DZA65_RS12525	0.73	+0.5
2,684,774	+		DZA65_RS12525	0.74	+0.8
2,684,864	+		DZA65_RS12525	0.78	-0.5
2,684,864	+		DZA65_RS12525	0.78	+0.5
2,684,864	+		DZA65_RS12525	0.78	-0.4
2,684,865	-		DZA65_RS12525	0.78	+0.5
2,684,865	-		DZA65_RS12525	0.78	+0.3
2,684,963	+		DZA65_RS12525	0.82	-0.1
2,684,963	+		DZA65_RS12525	0.82	-0.9
2,684,963	+		DZA65_RS12525	0.82	-2.0
2,684,963	+		DZA65_RS12525	0.82	-1.0
2,684,963	+		DZA65_RS12525	0.82	+2.3
2,684,964	-		DZA65_RS12525	0.82	-0.1
2,684,964	-				+0.9
2,684,964	-		DZA65_RS12525	0.82	+1.0
2,684,964	-		DZA65_RS12525	0.82	+0.7
2,684,964	-		DZA65_RS12525	0.82	-0.5
2,684,964	-		DZA65_RS12525	0.82	-1.6
2,684,964	-		DZA65_RS12525	0.82	-0.9
2,684,964	-		DZA65_RS12525	0.82	-0.3
2,684,964	-		DZA65_RS12525	0.82	+1.2
2,684,964	-		DZA65_RS12525	0.82	-1.0
2,684,964	-		DZA65_RS12525	0.82	+1.5
2,684,964	-		DZA65_RS12525	0.82	-0.0
2,684,964	-				-0.3
2,684,965	+		DZA65_RS12525	0.82	-0.2
2,684,966	-		DZA65_RS12525	0.82	+0.1
2,684,966	-		DZA65_RS12525	0.82	+0.9
2,684,966	-		DZA65_RS12525	0.82	-2.0
2,684,966	-		DZA65_RS12525	0.82	-2.0
2,684,966	-		DZA65_RS12525	0.82	-1.7
2,684,966	-		DZA65_RS12525	0.82	+0.9
2,685,070	+		DZA65_RS12525	0.86	-0.9
2,685,096	+		DZA65_RS12525	0.87	+0.1
2,685,097	-		DZA65_RS12525	0.87	+1.0
2,685,097	-		DZA65_RS12525	0.87	+0.3
2,685,097	-		DZA65_RS12525	0.87	+2.2
2,685,253	+				-1.7
2,685,254	-				+0.1
2,685,310	+				-0.2
2,685,477	-				-0.7
2,685,511	+				+0.7
2,685,511	+				+0.9
2,685,512	-				-0.7
2,685,512	-				-1.0
2,685,516	+				-0.1
2,685,516	+				+0.3
2,685,516	+				-1.0
2,685,517	-				-0.1
2,685,536	+				+1.3
2,685,542	+				-1.3
2,685,542	+				+0.1
2,685,569	+				-0.5
2,685,569	+				+0.6
2,685,570	-				-1.4
2,685,614	+				+0.3
2,685,727	+		DZA65_RS12530	0.12	+0.7
2,685,739	-		DZA65_RS12530	0.12	+1.7
2,685,852	+		DZA65_RS12530	0.20	-0.7
2,685,852	+		DZA65_RS12530	0.20	+0.7
2,685,853	-		DZA65_RS12530	0.20	-1.5
2,685,853	-		DZA65_RS12530	0.20	+1.0
2,685,853	-		DZA65_RS12530	0.20	+1.6
2,685,853	-		DZA65_RS12530	0.20	-1.1
2,685,853	-		DZA65_RS12530	0.20	-0.9
2,686,008	+		DZA65_RS12530	0.31	-2.5
2,686,009	-		DZA65_RS12530	0.31	+0.3
2,686,064	+		DZA65_RS12530	0.35	-0.1
2,686,065	-		DZA65_RS12530	0.35	-0.3
2,686,065	-		DZA65_RS12530	0.35	+0.6
2,686,065	-		DZA65_RS12530	0.35	-2.0
2,686,065	-		DZA65_RS12530	0.35	+0.0
2,686,065	-		DZA65_RS12530	0.35	-1.1
2,686,291	-		DZA65_RS12530	0.51	+0.3
2,686,291	-		DZA65_RS12530	0.51	-2.3
2,686,291	-		DZA65_RS12530	0.51	-1.6
2,686,487	+		DZA65_RS12530	0.64	-1.0
2,686,487	+		DZA65_RS12530	0.64	-3.3
2,686,488	-		DZA65_RS12530	0.64	-0.1
2,686,627	+		DZA65_RS12530	0.74	+1.1
2,686,627	+		DZA65_RS12530	0.74	-0.7
2,686,627	+		DZA65_RS12530	0.74	+1.0
2,686,627	+		DZA65_RS12530	0.74	-0.6
2,686,628	-		DZA65_RS12530	0.74	+0.7
2,686,628	-		DZA65_RS12530	0.74	-0.6
2,686,628	-		DZA65_RS12530	0.74	-0.4
2,686,628	-		DZA65_RS12530	0.74	-1.3
2,686,803	+		DZA65_RS12530	0.86	+0.6
2,686,803	+		DZA65_RS12530	0.86	-0.1
2,686,803	+		DZA65_RS12530	0.86	+0.2
2,686,803	+		DZA65_RS12530	0.86	-1.1
2,686,804	-		DZA65_RS12530	0.86	-0.2
2,686,850	+		DZA65_RS12530	0.89	+0.7
2,686,850	+		DZA65_RS12530	0.89	+1.2
2,686,850	+		DZA65_RS12530	0.89	-1.3
2,686,850	+		DZA65_RS12530	0.89	-1.0
2,686,850	+		DZA65_RS12530	0.89	-1.3
2,686,850	+		DZA65_RS12530	0.89	-0.5
2,686,850	+		DZA65_RS12530	0.89	-1.0
2,686,851	-		DZA65_RS12530	0.89	-2.0
2,686,851	-		DZA65_RS12530	0.89	-0.8
2,686,851	-		DZA65_RS12530	0.89	-0.7
2,686,851	-		DZA65_RS12530	0.89	-0.3
2,686,851	-		DZA65_RS12530	0.89	-1.5
2,686,851	-		DZA65_RS12530	0.89	-0.4
2,686,851	-		DZA65_RS12530	0.89	-0.7
2,686,851	-		DZA65_RS12530	0.89	+1.6
2,686,854	+		DZA65_RS12530	0.89	+0.1
2,686,854	+		DZA65_RS12530	0.89	+0.3
2,686,855	-		DZA65_RS12530	0.90	-0.1
2,687,056	+				+2.3
2,687,056	+				+0.4
2,687,056	+				+0.9
2,687,056	+				+0.3
2,687,057	-				+1.5
2,687,057	-				+1.1
2,687,057	-				+1.1
2,687,095	+				-2.7
2,687,123	+		DZA65_RS12535	0.14	-2.5
2,687,123	+		DZA65_RS12535	0.14	-0.9
2,687,162	+		DZA65_RS12535	0.34	+0.3
2,687,162	+		DZA65_RS12535	0.34	-0.8
2,687,162	+		DZA65_RS12535	0.34	+0.2
2,687,162	+		DZA65_RS12535	0.34	-0.3
2,687,162	+		DZA65_RS12535	0.34	-1.4
2,687,162	+		DZA65_RS12535	0.34	-0.3
2,687,162	+		DZA65_RS12535	0.34	-0.3
2,687,162	+		DZA65_RS12535	0.34	-1.1
2,687,162	+		DZA65_RS12535	0.34	-0.7
2,687,162	+		DZA65_RS12535	0.34	+0.3
2,687,162	+		DZA65_RS12535	0.34	+0.3
2,687,163	-		DZA65_RS12535	0.35	-1.3
2,687,163	-		DZA65_RS12535	0.35	-0.7
2,687,163	-		DZA65_RS12535	0.35	-2.0
2,687,163	-		DZA65_RS12535	0.35	-0.2
2,687,163	-		DZA65_RS12535	0.35	+0.3
2,687,163	-		DZA65_RS12535	0.35	-1.5
2,687,163	-		DZA65_RS12535	0.35	-1.1
2,687,163	-		DZA65_RS12535	0.35	-0.9
2,687,163	-		DZA65_RS12535	0.35	-0.0
2,687,163	-		DZA65_RS12535	0.35	+0.2
2,687,163	-		DZA65_RS12535	0.35	-1.1
2,687,163	-		DZA65_RS12535	0.35	+1.2
2,687,165	-		DZA65_RS12535	0.36	-1.9
2,687,165	-		DZA65_RS12535	0.36	-2.0
2,687,192	-		DZA65_RS12535	0.50	+0.9
2,687,192	-		DZA65_RS12535	0.50	-0.9
2,687,274	-				-0.4
2,687,326	+				+0.3
2,687,366	+				+0.1
2,687,366	+				-2.3
2,687,366	+				-0.7
2,687,367	-				+0.3
2,687,367	-				+0.6
2,687,369	+				-0.4
2,687,370	-				+0.0
2,687,370	-				-0.0
2,687,505	+				-0.3
2,687,506	-				+0.2
2,687,506	-				-2.3
2,687,692	-		DZA65_RS12540	0.15	+1.9
2,687,777	+		DZA65_RS12540	0.19	+0.3
2,687,981	+		DZA65_RS12540	0.30	+0.2