Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12260

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,618,467	-		DZA65_RS12255	0.29	+0.5
2,618,635	+		DZA65_RS12255	0.45	-0.7
2,618,635	+		DZA65_RS12255	0.45	-1.9
2,618,635	+		DZA65_RS12255	0.45	-0.4
2,618,636	-		DZA65_RS12255	0.45	-2.3
2,618,636	-		DZA65_RS12255	0.45	-0.7
2,618,636	-		DZA65_RS12255	0.45	+0.1
2,618,659	-		DZA65_RS12255	0.47	-0.1
2,618,776	-		DZA65_RS12255	0.58	+0.1
2,618,865	-		DZA65_RS12255	0.66	-0.7
2,619,112	-		DZA65_RS12255	0.89	-0.1
2,619,112	-		DZA65_RS12255	0.89	-1.3
2,619,132	+				+0.6
2,619,132	+				-1.4
2,619,132	+				+1.0
2,619,132	+				+1.5
2,619,133	-				-1.3
2,619,133	-				-1.4
2,619,133	-				-0.2
2,619,133	-				+0.3
2,619,133	-				+0.8
2,619,133	-				-0.3
2,619,133	-				+0.3
2,619,133	-				-0.3
2,619,133	-				+1.4
2,619,133	-				+0.2
2,619,133	-				+1.3
2,619,146	+				-1.3
2,619,146	+				-1.9
2,619,147	-				+0.6
2,619,147	-				-0.0
2,619,181	+				-0.4
2,619,182	-				+1.6
2,619,262	-				-0.9
2,619,278	+				+0.1
2,619,279	-				-0.4
2,619,295	+				+0.5
2,619,295	+				+0.3
2,619,295	+				-0.5
2,619,295	+				-0.5
2,619,296	-				-0.5
2,619,296	-				-0.2
2,619,320	-				-0.8
2,619,379	+				+0.1
2,619,379	+				+1.6
2,619,380	-				+1.7
2,619,380	-				+1.1
2,619,380	-				+0.1
2,619,380	-				-1.3
2,619,380	-				-0.1
2,619,380	-				+0.3
2,619,380	-				+0.3
2,619,380	-				-0.9
2,619,380	-				-0.2
2,619,400	+				-0.5
2,619,400	+				-0.4
2,619,401	-				+0.7
2,619,462	+				+0.6
2,619,462	+				+0.1
2,619,463	-				+0.9
2,619,463	-				-0.4
2,619,463	-				-0.1
2,619,463	-				+0.3
2,619,545	-				-0.3
2,619,644	-		DZA65_RS12260	0.15	-1.1
2,619,644	-		DZA65_RS12260	0.15	-0.5
2,619,653	-		DZA65_RS12260	0.15	+1.7
2,619,653	-		DZA65_RS12260	0.15	+0.3
2,619,757	+		DZA65_RS12260	0.24	-0.7
2,619,757	+		DZA65_RS12260	0.24	-0.2
2,619,758	-		DZA65_RS12260	0.24	+1.2
2,619,796	+		DZA65_RS12260	0.27	+0.6
2,619,796	+		DZA65_RS12260	0.27	-0.0
2,619,797	-		DZA65_RS12260	0.27	-0.7
2,619,797	-		DZA65_RS12260	0.27	-0.1
2,619,797	-		DZA65_RS12260	0.27	-0.7
2,619,797	-		DZA65_RS12260	0.27	+1.9
2,619,808	+		DZA65_RS12260	0.28	+0.3
2,619,865	+		DZA65_RS12260	0.33	+1.7
2,619,946	+		DZA65_RS12260	0.39	-0.1
2,619,946	+		DZA65_RS12260	0.39	-1.1
2,619,947	-		DZA65_RS12260	0.39	+0.3
2,619,947	-		DZA65_RS12260	0.39	+0.0
2,619,979	+		DZA65_RS12260	0.42	-0.1
2,619,979	+		DZA65_RS12260	0.42	-0.2
2,619,979	+		DZA65_RS12260	0.42	-2.5
2,619,979	+		DZA65_RS12260	0.42	+0.2
2,619,979	+		DZA65_RS12260	0.42	+0.6
2,619,979	+		DZA65_RS12260	0.42	-0.4
2,619,980	-		DZA65_RS12260	0.42	-1.3
2,619,980	-		DZA65_RS12260	0.42	-0.1
2,619,980	-		DZA65_RS12260	0.42	-0.5
2,619,980	-		DZA65_RS12260	0.42	-0.7
2,619,980	-		DZA65_RS12260	0.42	-1.0
2,619,982	+		DZA65_RS12260	0.42	-0.4
2,619,982	+		DZA65_RS12260	0.42	-2.5
2,619,982	+		DZA65_RS12260	0.42	-0.5
2,619,982	+		DZA65_RS12260	0.42	-0.5
2,619,983	-		DZA65_RS12260	0.42	-1.0
2,619,983	-		DZA65_RS12260	0.42	+0.6
2,619,983	-		DZA65_RS12260	0.42	+0.2
2,619,983	-		DZA65_RS12260	0.42	+0.1
2,619,983	-		DZA65_RS12260	0.42	+0.9
2,619,983	-		DZA65_RS12260	0.42	-0.2
2,619,983	-		DZA65_RS12260	0.42	+0.7
2,619,983	-		DZA65_RS12260	0.42	-0.3
2,619,983	-		DZA65_RS12260	0.42	+0.5
2,619,983	-		DZA65_RS12260	0.42	+0.5
2,619,983	-		DZA65_RS12260	0.42	+0.9
2,619,983	-		DZA65_RS12260	0.42	+1.2
2,620,032	+		DZA65_RS12260	0.46	-0.4
2,620,032	+		DZA65_RS12260	0.46	+0.3
2,620,033	-		DZA65_RS12260	0.46	+0.3
2,620,033	-		DZA65_RS12260	0.46	-1.4
2,620,033	-		DZA65_RS12260	0.46	-0.5
2,620,082	+		DZA65_RS12260	0.50	-0.5
2,620,112	+		DZA65_RS12260	0.53	+0.9
2,620,122	-		DZA65_RS12260	0.54	-1.6
2,620,315	+		DZA65_RS12260	0.69	-0.7
2,620,315	+		DZA65_RS12260	0.69	+0.3
2,620,315	+		DZA65_RS12260	0.69	-0.7
2,620,316	-		DZA65_RS12260	0.69	-1.0
2,620,355	+		DZA65_RS12260	0.73	+0.3
2,620,356	-		DZA65_RS12260	0.73	-0.4
2,620,368	+		DZA65_RS12260	0.74	-0.1
2,620,387	+		DZA65_RS12260	0.75	-0.6
2,620,400	-		DZA65_RS12260	0.76	-2.3
2,620,400	-		DZA65_RS12260	0.76	-1.1
2,620,400	-		DZA65_RS12260	0.76	+0.2
2,620,409	-		DZA65_RS12260	0.77	-1.7
2,620,414	+		DZA65_RS12260	0.77	+0.8
2,620,414	+		DZA65_RS12260	0.77	+0.9
2,620,415	-		DZA65_RS12260	0.77	+1.6
2,620,415	-		DZA65_RS12260	0.77	-0.4
2,620,415	-		DZA65_RS12260	0.77	-1.9
2,620,438	+		DZA65_RS12260	0.79	+0.4
2,620,438	+		DZA65_RS12260	0.79	+0.8
2,620,438	+		DZA65_RS12260	0.79	-0.9
2,620,439	-		DZA65_RS12260	0.79	-2.2
2,620,439	-		DZA65_RS12260	0.79	-1.9
2,620,527	-		DZA65_RS12260	0.87	-1.3
2,620,609	+				+0.3
2,620,609	+				-1.3
2,620,612	-				+1.3
2,620,612	-				+0.8
2,620,693	+				-1.5
2,620,694	-				-0.8
2,620,768	-				-0.9
2,620,782	+				-0.9
2,620,782	+				-1.3
2,620,783	-				+0.2
2,620,783	-				-0.1
2,620,823	+				-2.7
2,620,824	-				+1.3
2,620,833	-				+0.2
2,620,834	+				+0.3
2,620,835	-				-0.9
2,620,835	-				-0.8
2,620,835	-				+0.8
2,620,835	-				+0.3
2,620,836	+				+0.8
2,620,836	+				+1.4
2,620,836	+				-0.4
2,620,836	+				-0.1
2,620,837	-				-2.3
2,620,837	-				-0.4
2,620,837	-				+0.3
2,620,837	-				+1.5
2,620,837	-				+0.3
2,620,837	-				+0.3
2,620,837	-				-2.5
2,620,880	+				+0.0
2,620,927	+				-1.3
2,620,928	-				+0.8
2,620,985	-				-0.7
2,620,988	+				-0.7
2,621,025	-				+0.3
2,621,034	+				-0.3
2,621,052	-				-0.4
2,621,081	-				-0.1
2,621,228	+				+0.5
2,621,253	+				-0.7
2,621,265	+				-1.0
2,621,265	+				-0.2
2,621,266	-				-0.8
2,621,266	-				-0.3
2,621,266	-				-0.1
2,621,269	+				-0.4
2,621,270	-				-0.3
2,621,270	-				-1.3
2,621,272	-				+0.6
2,621,290	-				-0.5
2,621,290	-				-1.2
2,621,290	-				-0.7
2,621,293	-				-1.0
2,621,293	-				-0.7
2,621,304	-				-0.1
2,621,381	-				+0.9
2,621,409	+				+0.1
2,621,409	+				-0.3
2,621,409	+				+0.3
2,621,410	-				-0.7
2,621,419	-				-0.9
2,621,460	+		DZA65_RS12265	0.11	+0.1
2,621,460	+		DZA65_RS12265	0.11	-1.1
2,621,461	-		DZA65_RS12265	0.11	-1.3
2,621,461	-		DZA65_RS12265	0.11	-0.5
2,621,482	-				-0.7
2,621,484	+		DZA65_RS12265	0.12	-0.6
2,621,540	+		DZA65_RS12265	0.15	-0.7
2,621,541	-		DZA65_RS12265	0.15	-0.4
2,621,541	-		DZA65_RS12265	0.15	-0.3
2,621,579	+		DZA65_RS12265	0.17	-0.7
2,621,580	-		DZA65_RS12265	0.17	-2.9
2,621,590	+		DZA65_RS12265	0.17	+0.7