Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10920

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,310,119	+		DZA65_RS10910	0.80	-0.8
2,310,183	+				+0.1
2,310,183	+				+0.1
2,310,183	+				-1.7
2,310,183	+				-2.7
2,310,183	+				+1.3
2,310,183	+				+1.0
2,310,183	+				-0.8
2,310,184	-				-0.2
2,310,184	-				+1.3
2,310,184	-				-0.2
2,310,184	-				-0.4
2,310,204	-				+0.3
2,310,256	+				-1.2
2,310,256	+				-1.2
2,310,256	+				-0.9
2,310,312	-		DZA65_RS10915	0.10	-0.1
2,310,312	-		DZA65_RS10915	0.10	-2.3
2,310,312	-		DZA65_RS10915	0.10	-0.1
2,310,328	-		DZA65_RS10915	0.13	+0.3
2,310,332	+		DZA65_RS10915	0.14	-0.1
2,310,332	+		DZA65_RS10915	0.14	-2.2
2,310,333	-		DZA65_RS10915	0.14	-2.1
2,310,407	+		DZA65_RS10915	0.27	-2.5
2,310,409	+		DZA65_RS10915	0.27	-0.2
2,310,569	+		DZA65_RS10915	0.56	-2.8
2,310,569	+		DZA65_RS10915	0.56	-1.5
2,310,575	+		DZA65_RS10915	0.57	-2.8
2,310,616	-				-0.7
2,310,689	+		DZA65_RS10915	0.77	-2.8
2,310,690	-		DZA65_RS10915	0.78	-1.1
2,310,764	+				-2.2
2,310,764	+				-2.7
2,310,765	-				+0.3
2,310,766	+				-3.1
2,310,893	-				+0.6
2,310,923	+				-1.7
2,310,947	-				-0.2
2,310,951	+				+1.1
2,310,951	+				+1.0
2,311,029	+				-2.0
2,311,029	+				-0.9
2,311,029	+				-0.7
2,311,029	+				-3.1
2,311,030	-				-0.0
2,311,030	-				+0.3
2,311,030	-				+0.3
2,311,040	+				+0.8
2,311,040	+				-1.1
2,311,040	+				-0.7
2,311,040	+				-1.0
2,311,040	+				-1.2
2,311,040	+				-2.5
2,311,041	-				-0.3
2,311,041	-				+0.5
2,311,044	+				-2.7
2,311,044	+				-2.0
2,311,044	+				+0.1
2,311,045	-				-0.4
2,311,045	-				-0.3
2,311,045	-				-1.4
2,311,045	-				-0.1
2,311,045	-				-0.1
2,311,045	-				-0.9
2,311,045	-				+0.3
2,311,045	-				-0.4
2,311,045	-				-1.5
2,311,045	-				-0.1
2,311,279	+		DZA65_RS10920	0.36	-1.7
2,311,280	-		DZA65_RS10920	0.36	+1.7
2,311,292	+		DZA65_RS10920	0.37	-1.5
2,311,320	-		DZA65_RS10920	0.41	-0.6
2,311,377	-		DZA65_RS10920	0.49	-0.4
2,311,377	-		DZA65_RS10920	0.49	+1.8
2,311,445	+		DZA65_RS10920	0.58	-0.7
2,311,445	+		DZA65_RS10920	0.58	-3.2
2,311,555	+		DZA65_RS10920	0.72	+1.1
2,311,595	+		DZA65_RS10920	0.78	+0.3
2,311,595	+		DZA65_RS10920	0.78	-0.7
2,311,595	+		DZA65_RS10920	0.78	-0.8
2,311,595	+		DZA65_RS10920	0.78	-0.8
2,311,595	+		DZA65_RS10920	0.78	-1.0
2,311,596	-		DZA65_RS10920	0.78	-2.2
2,311,596	-		DZA65_RS10920	0.78	-1.7
2,311,596	-		DZA65_RS10920	0.78	-0.5
2,311,596	-		DZA65_RS10920	0.78	-0.5
2,311,596	-		DZA65_RS10920	0.78	-1.7
2,311,600	+		DZA65_RS10920	0.78	-2.5
2,311,600	+		DZA65_RS10920	0.78	+0.3
2,311,600	+		DZA65_RS10920	0.78	-0.9
2,311,600	+		DZA65_RS10920	0.78	-1.1
2,311,613	+		DZA65_RS10920	0.80	-0.2
2,311,613	+		DZA65_RS10920	0.80	-2.4
2,311,613	+		DZA65_RS10920	0.80	-0.9
2,311,614	-		DZA65_RS10920	0.80	-0.4
2,311,614	-		DZA65_RS10920	0.80	-0.2
2,311,614	-		DZA65_RS10920	0.80	-0.7
2,311,640	-		DZA65_RS10920	0.84	-0.1
2,311,690	+				-2.0
2,311,691	-				+0.3
2,311,738	-				+0.9
2,311,738	-				-1.2
2,311,739	+				+0.1
2,311,739	+				-2.0
2,311,740	-				-2.0
2,311,740	-				-0.9
2,311,756	+				-1.0
2,311,790	-				+0.0
2,311,798	+				+0.8
2,311,799	-				+0.9
2,311,799	-				+0.1
2,311,824	+				-1.3
2,311,824	+				-0.2
2,311,952	+				-0.0
2,311,953	-				+1.1
2,311,953	-				+0.6
2,311,978	-				+0.6
2,311,978	-				-0.3
2,312,021	+				-2.0
2,312,048	+				-0.5
2,312,048	+				+0.8
2,312,093	+				+0.7
2,312,093	+				-0.1
2,312,093	+				+0.1
2,312,093	+				+0.2
2,312,094	-				+2.1
2,312,227	-				-0.0
2,312,235	+				+0.8
2,312,235	+				+0.3
2,312,236	-				+0.3
2,312,236	-				+0.3
2,312,248	+				+1.4
2,312,290	+				+1.2
2,312,299	+				-0.4
2,312,300	-				+1.3
2,312,320	+				-0.7
2,312,356	+		DZA65_RS10930	0.13	-1.2
2,312,356	+		DZA65_RS10930	0.13	+0.6
2,312,356	+		DZA65_RS10930	0.13	-1.4
2,312,356	+		DZA65_RS10930	0.13	+0.2
2,312,356	+		DZA65_RS10930	0.13	-1.7
2,312,356	+		DZA65_RS10930	0.13	+1.0
2,312,356	+		DZA65_RS10930	0.13	+1.1
2,312,356	+		DZA65_RS10930	0.13	+1.1
2,312,356	+		DZA65_RS10930	0.13	-1.8
2,312,356	+				-1.7
2,312,356	+		DZA65_RS10930	0.13	+0.3
2,312,357	-		DZA65_RS10930	0.13	-1.7
2,312,357	-		DZA65_RS10930	0.13	-1.4
2,312,357	-		DZA65_RS10930	0.13	+0.1
2,312,357	-		DZA65_RS10930	0.13	+0.3
2,312,357	-		DZA65_RS10930	0.13	+0.2
2,312,357	-		DZA65_RS10930	0.13	-0.7
2,312,357	-		DZA65_RS10930	0.13	+0.6
2,312,377	+		DZA65_RS10930	0.16	+0.5
2,312,433	-				-1.7
2,312,433	-		DZA65_RS10930	0.25	-1.7
2,312,439	-		DZA65_RS10930	0.26	+0.0
2,312,459	+		DZA65_RS10930	0.29	-0.1
2,312,459	+		DZA65_RS10930	0.29	-0.1
2,312,459	+		DZA65_RS10930	0.29	+0.6
2,312,459	+		DZA65_RS10930	0.29	+0.6
2,312,459	+		DZA65_RS10930	0.29	+0.8
2,312,459	+		DZA65_RS10930	0.29	-0.3
2,312,460	-		DZA65_RS10930	0.29	-0.1
2,312,460	-		DZA65_RS10930	0.29	-1.2
2,312,460	-		DZA65_RS10930	0.29	-1.7
2,312,463	+		DZA65_RS10930	0.30	-0.7
2,312,463	+		DZA65_RS10930	0.30	-0.2
2,312,463	+		DZA65_RS10930	0.30	+0.2
2,312,463	+		DZA65_RS10930	0.30	+0.3
2,312,463	+		DZA65_RS10930	0.30	+0.3
2,312,463	+		DZA65_RS10930	0.30	+0.8
2,312,463	+		DZA65_RS10930	0.30	-0.7
2,312,464	-		DZA65_RS10930	0.30	+0.6
2,312,464	-		DZA65_RS10930	0.30	-0.1
2,312,464	-		DZA65_RS10930	0.30	+1.3
2,312,464	-		DZA65_RS10930	0.30	+0.0
2,312,464	-		DZA65_RS10930	0.30	-0.0
2,312,464	-		DZA65_RS10930	0.30	-0.8
2,312,464	-		DZA65_RS10930	0.30	+0.9
2,312,464	-		DZA65_RS10930	0.30	+0.8
2,312,464	-		DZA65_RS10930	0.30	-0.7
2,312,465	+		DZA65_RS10930	0.30	+0.1
2,312,465	+		DZA65_RS10930	0.30	+0.3
2,312,465	+		DZA65_RS10930	0.30	-0.4
2,312,466	-		DZA65_RS10930	0.30	-0.3
2,312,494	+		DZA65_RS10930	0.35	+0.3
2,312,495	-		DZA65_RS10930	0.35	+0.8
2,312,519	+		DZA65_RS10930	0.39	+0.9
2,312,531	-		DZA65_RS10930	0.41	-1.2
2,312,589	+		DZA65_RS10930	0.50	+0.1
2,312,589	+		DZA65_RS10930	0.50	-0.4
2,312,592	+		DZA65_RS10930	0.50	-2.1
2,312,593	-		DZA65_RS10930	0.50	-1.1
2,312,593	-		DZA65_RS10930	0.50	+0.3
2,312,625	+		DZA65_RS10930	0.55	+0.1
2,312,626	-		DZA65_RS10930	0.56	+1.1
2,312,626	-		DZA65_RS10930	0.56	-1.2
2,312,626	-		DZA65_RS10930	0.56	+2.0
2,312,646	+		DZA65_RS10930	0.59	-0.4
2,312,646	+		DZA65_RS10930	0.59	-1.5
2,312,646	+		DZA65_RS10930	0.59	+0.1
2,312,646	+		DZA65_RS10930	0.59	-0.7
2,312,647	-		DZA65_RS10930	0.59	-1.1
2,312,647	-		DZA65_RS10930	0.59	-0.9
2,312,647	-		DZA65_RS10930	0.59	+0.3
2,312,647	-		DZA65_RS10930	0.59	+0.7
2,312,647	-		DZA65_RS10930	0.59	-1.5
2,312,647	-		DZA65_RS10930	0.59	+0.3
2,312,647	-		DZA65_RS10930	0.59	-0.5
2,312,698	+		DZA65_RS10930	0.67	+0.3
2,312,708	+		DZA65_RS10930	0.69	-2.2
2,312,708	+		DZA65_RS10930	0.69	+0.6
2,312,709	-		DZA65_RS10930	0.69	-1.7
2,312,754	+		DZA65_RS10930	0.76	+2.3
2,312,755	-		DZA65_RS10930	0.76	-0.3
2,312,755	-		DZA65_RS10930	0.76	-0.5