Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10770

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,277,375	-		DZA65_RS10760	0.16	+0.5
2,277,484	+		DZA65_RS10760	0.55	-0.0
2,277,485	-		DZA65_RS10760	0.55	+0.1
2,277,485	-		DZA65_RS10760	0.55	-1.2
2,277,488	-		DZA65_RS10760	0.57	+0.1
2,277,577	+		DZA65_RS10760	0.89	+1.4
2,277,577	+		DZA65_RS10760	0.89	-0.6
2,277,578	-		DZA65_RS10760	0.89	-1.6
2,277,578	-		DZA65_RS10760	0.89	-0.4
2,277,580	+				-0.1
2,277,580	+				-0.8
2,277,581	-				-2.0
2,277,581	-				-0.8
2,277,581	-				-0.1
2,277,581	-				+0.4
2,277,581	-				+0.4
2,277,581	-				+1.8
2,277,605	+				+0.5
2,277,647	+				+0.1
2,277,647	+				-0.7
2,277,654	+				+0.9
2,277,655	-				-1.0
2,277,655	-				-0.8
2,277,673	+				-0.5
2,277,674	-				+0.7
2,277,716	+				-0.9
2,277,736	+		DZA65_RS10765	0.13	-0.6
2,277,736	+		DZA65_RS10765	0.13	-0.6
2,277,779	+		DZA65_RS10765	0.20	+0.0
2,277,780	-		DZA65_RS10765	0.20	-0.1
2,277,820	+		DZA65_RS10765	0.26	+0.9
2,277,820	+		DZA65_RS10765	0.26	+0.7
2,277,822	+		DZA65_RS10765	0.26	+0.3
2,277,822	+		DZA65_RS10765	0.26	+0.4
2,277,822	+		DZA65_RS10765	0.26	+0.5
2,277,822	+		DZA65_RS10765	0.26	-0.4
2,277,822	+		DZA65_RS10765	0.26	-0.1
2,277,822	+		DZA65_RS10765	0.26	+0.2
2,277,823	-		DZA65_RS10765	0.26	-0.6
2,277,823	-		DZA65_RS10765	0.26	+1.7
2,277,823	-				-0.1
2,277,823	-		DZA65_RS10765	0.26	-1.2
2,277,823	-		DZA65_RS10765	0.26	+0.4
2,277,894	+		DZA65_RS10765	0.38	-2.0
2,277,894	+		DZA65_RS10765	0.38	-0.3
2,277,895	-		DZA65_RS10765	0.38	+0.2
2,277,895	-		DZA65_RS10765	0.38	+0.0
2,277,939	+		DZA65_RS10765	0.45	+1.0
2,277,939	+		DZA65_RS10765	0.45	+0.6
2,277,939	+		DZA65_RS10765	0.45	-1.0
2,277,940	-		DZA65_RS10765	0.45	-0.8
2,277,940	-		DZA65_RS10765	0.45	-0.1
2,277,940	-		DZA65_RS10765	0.45	+0.3
2,277,940	-		DZA65_RS10765	0.45	+0.1
2,277,972	-		DZA65_RS10765	0.50	+0.0
2,277,984	-		DZA65_RS10765	0.52	+0.4
2,277,984	-		DZA65_RS10765	0.52	-1.0
2,278,034	+		DZA65_RS10765	0.59	-1.2
2,278,034	+		DZA65_RS10765	0.59	-0.1
2,278,034	+		DZA65_RS10765	0.59	-1.1
2,278,035	-		DZA65_RS10765	0.60	-0.1
2,278,157	+		DZA65_RS10765	0.79	-0.2
2,278,157	+		DZA65_RS10765	0.79	-0.2
2,278,157	+		DZA65_RS10765	0.79	-1.2
2,278,157	+		DZA65_RS10765	0.79	-0.1
2,278,157	+		DZA65_RS10765	0.79	-1.5
2,278,158	-		DZA65_RS10765	0.79	-1.2
2,278,158	-		DZA65_RS10765	0.79	+1.4
2,278,158	-		DZA65_RS10765	0.79	+1.9
2,278,277	+				-0.0
2,278,277	+				-2.0
2,278,278	-				+1.1
2,278,278	-				+1.8
2,278,294	+				-0.3
2,278,308	+				+0.4
2,278,308	+				-0.4
2,278,308	+				-0.9
2,278,308	+				-2.8
2,278,309	-				-1.1
2,278,309	-				-0.0
2,278,311	+				-2.2
2,278,311	+				-0.6
2,278,312	-				+0.1
2,278,312	-				+0.7
2,278,320	+				+1.8
2,278,356	+				-0.9
2,278,397	+				+0.0
2,278,398	-				+0.9
2,278,398	-				+0.0
2,278,439	+				+2.1
2,278,439	+				-0.6
2,278,439	+				+0.6
2,278,439	+				-0.6
2,278,443	+				-0.6
2,278,444	-				+0.8
2,278,444	-				+0.7
2,278,444	-				+0.2
2,278,478	-		DZA65_RS10770	0.12	-0.4
2,278,650	+		DZA65_RS10770	0.29	-0.8
2,278,650	+		DZA65_RS10770	0.29	+0.4
2,278,650	+		DZA65_RS10770	0.29	+1.0
2,278,650	+		DZA65_RS10770	0.29	-0.4
2,278,650	+		DZA65_RS10770	0.29	+0.4
2,278,650	+		DZA65_RS10770	0.29	-1.8
2,278,715	-		DZA65_RS10770	0.35	-1.8
2,278,734	-		DZA65_RS10770	0.37	+0.5
2,278,965	+		DZA65_RS10770	0.60	-2.0
2,279,130	+		DZA65_RS10770	0.76	-0.6
2,279,130	+		DZA65_RS10770	0.76	+0.0
2,279,139	+		DZA65_RS10770	0.77	+0.5
2,279,139	+		DZA65_RS10770	0.77	+0.4
2,279,140	-		DZA65_RS10770	0.77	-2.5
2,279,140	-		DZA65_RS10770	0.77	+0.0
2,279,210	+		DZA65_RS10770	0.84	-0.6
2,279,211	-		DZA65_RS10770	0.84	-0.5
2,279,211	-		DZA65_RS10770	0.84	-1.5
2,279,214	+		DZA65_RS10770	0.84	-0.9
2,279,214	+		DZA65_RS10770	0.84	+1.1
2,279,214	+		DZA65_RS10770	0.84	+0.1
2,279,214	+		DZA65_RS10770	0.84	-0.2
2,279,214	+		DZA65_RS10770	0.84	-1.5
2,279,214	+		DZA65_RS10770	0.84	+0.4
2,279,215	-		DZA65_RS10770	0.84	+0.1
2,279,215	-		DZA65_RS10770	0.84	-2.6
2,279,305	-				-0.5
2,279,346	+				+0.8
2,279,346	+				+0.8
2,279,347	-				-2.8
2,279,347	-				-0.1
2,279,355	+				-0.5
2,279,355	+				-0.6
2,279,355	+				-0.6
2,279,355	+				+0.4
2,279,356	-				+0.9
2,279,356	-				+1.8
2,279,379	-				+0.4
2,279,436	-				-0.6
2,279,436	-				+0.2
2,279,436	-				+0.6
2,279,436	-				-0.5
2,279,455	-				+1.1
2,279,455	-				+0.1
2,279,675	+				-1.9
2,279,717	-		DZA65_RS10775	0.12	-0.2
2,279,717	-		DZA65_RS10775	0.12	+0.2
2,279,717	-		DZA65_RS10775	0.12	+0.0
2,279,886	-		DZA65_RS10775	0.21	+0.9
2,279,996	+		DZA65_RS10775	0.27	+0.7
2,279,997	-		DZA65_RS10775	0.27	+0.1
2,280,001	-		DZA65_RS10775	0.27	-0.2
2,280,001	-		DZA65_RS10775	0.27	-0.4
2,280,001	-		DZA65_RS10775	0.27	+1.7
2,280,104	+		DZA65_RS10775	0.33	+0.4
2,280,115	+		DZA65_RS10775	0.34	+0.4
2,280,313	+		DZA65_RS10775	0.44	-0.2
2,280,313	+		DZA65_RS10775	0.44	+0.9
2,280,313	+		DZA65_RS10775	0.44	+0.4
2,280,313	+		DZA65_RS10775	0.44	-0.4
2,280,313	+		DZA65_RS10775	0.44	-1.5
2,280,313	+		DZA65_RS10775	0.44	-0.5
2,280,314	-		DZA65_RS10775	0.44	-0.4
2,280,314	-		DZA65_RS10775	0.44	-0.4
2,280,336	+		DZA65_RS10775	0.46	-0.2
2,280,336	+		DZA65_RS10775	0.46	-0.6