Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10415

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,199,080	+		DZA65_RS10400	0.88	+0.5
2,199,104	+		DZA65_RS10400	0.89	+1.4
2,199,104	+		DZA65_RS10400	0.89	-1.1
2,199,105	-		DZA65_RS10400	0.89	-1.2
2,199,337	+				-0.6
2,199,763	+		DZA65_RS10410	0.24	+0.1
2,199,943	+		DZA65_RS10410	0.66	-0.6
2,199,943	+		DZA65_RS10410	0.66	+0.2
2,199,943	+		DZA65_RS10410	0.66	-0.1
2,199,943	+		DZA65_RS10410	0.66	-0.6
2,199,943	+		DZA65_RS10410	0.66	-0.2
2,199,944	-		DZA65_RS10410	0.66	-0.1
2,199,944	-		DZA65_RS10410	0.66	-0.2
2,199,944	-		DZA65_RS10410	0.66	+0.3
2,199,989	+		DZA65_RS10410	0.76	+1.3
2,199,989	+		DZA65_RS10410	0.76	+0.6
2,199,989	+		DZA65_RS10410	0.76	+0.5
2,200,010	-		DZA65_RS10410	0.81	+0.9
2,200,151	-				-3.0
2,200,151	-				-0.5
2,200,163	+				+0.1
2,200,164	-				+0.4
2,200,215	+				+0.0
2,200,215	+				+0.9
2,200,215	+				+0.2
2,200,215	+				-0.4
2,200,215	+				+1.8
2,200,215	+				-0.2
2,200,216	-				+0.6
2,200,216	-				-0.2
2,200,216	-				+0.7
2,200,216	-				-1.0
2,200,216	-				-0.1
2,200,216	-				+0.6
2,200,216	-				+0.5
2,200,216	-				-1.0
2,200,216	-				-0.2
2,200,216	-				+0.8
2,200,216	-				-2.8
2,200,216	-				+0.9
2,200,216	-				-0.4
2,200,216	-				+1.4
2,200,216	-				+1.2
2,200,482	+		DZA65_RS10415	0.11	-0.6
2,200,482	+		DZA65_RS10415	0.11	-0.8
2,200,482	+		DZA65_RS10415	0.11	+0.4
2,200,482	+		DZA65_RS10415	0.11	-0.1
2,200,482	+		DZA65_RS10415	0.11	+0.5
2,200,482	+		DZA65_RS10415	0.11	+0.2
2,200,483	-		DZA65_RS10415	0.11	+0.7
2,200,483	-		DZA65_RS10415	0.11	+2.5
2,200,483	-		DZA65_RS10415	0.11	+0.6
2,200,483	-		DZA65_RS10415	0.11	-0.5
2,200,483	-		DZA65_RS10415	0.11	-0.6
2,200,487	-		DZA65_RS10415	0.11	+0.1
2,200,572	-		DZA65_RS10415	0.13	+0.0
2,200,587	+		DZA65_RS10415	0.13	+0.2
2,200,588	-				+0.9
2,200,652	-		DZA65_RS10415	0.15	+1.8
2,200,725	+		DZA65_RS10415	0.17	+1.6
2,200,725	+		DZA65_RS10415	0.17	+0.8
2,200,725	+		DZA65_RS10415	0.17	+0.7
2,200,725	+		DZA65_RS10415	0.17	+0.2
2,200,725	+		DZA65_RS10415	0.17	-0.6
2,200,725	+		DZA65_RS10415	0.17	-1.6
2,200,726	-		DZA65_RS10415	0.17	-2.6
2,200,726	-		DZA65_RS10415	0.17	+0.7
2,200,748	+		DZA65_RS10415	0.18	-0.6
2,200,749	-		DZA65_RS10415	0.18	-0.1
2,200,749	-		DZA65_RS10415	0.18	-0.1
2,200,782	+		DZA65_RS10415	0.19	+0.5
2,200,783	-		DZA65_RS10415	0.19	-0.2
2,200,903	-		DZA65_RS10415	0.22	+0.4
2,201,089	+		DZA65_RS10415	0.27	-2.6
2,201,089	+		DZA65_RS10415	0.27	-0.1
2,201,118	+		DZA65_RS10415	0.27	+0.8
2,201,119	-		DZA65_RS10415	0.27	-0.1
2,201,119	-		DZA65_RS10415	0.27	+0.0
2,201,151	+		DZA65_RS10415	0.28	-1.6
2,201,151	+		DZA65_RS10415	0.28	+0.2
2,201,151	+		DZA65_RS10415	0.28	+0.9
2,201,151	+		DZA65_RS10415	0.28	+1.1
2,201,151	+		DZA65_RS10415	0.28	+0.2
2,201,151	+		DZA65_RS10415	0.28	-0.6
2,201,151	+				+1.4
2,201,151	+		DZA65_RS10415	0.28	-0.5
2,201,151	+		DZA65_RS10415	0.28	+1.2
2,201,151	+		DZA65_RS10415	0.28	-2.0
2,201,151	+		DZA65_RS10415	0.28	-0.1
2,201,151	+		DZA65_RS10415	0.28	+0.1
2,201,151	+		DZA65_RS10415	0.28	+0.3
2,201,151	+		DZA65_RS10415	0.28	+0.3
2,201,151	+		DZA65_RS10415	0.28	+0.9
2,201,152	-		DZA65_RS10415	0.28	-0.1
2,201,152	-		DZA65_RS10415	0.28	+0.4
2,201,152	-				+1.4
2,201,152	-		DZA65_RS10415	0.28	+1.1
2,201,152	-		DZA65_RS10415	0.28	+0.0
2,201,152	-		DZA65_RS10415	0.28	+0.1
2,201,152	-		DZA65_RS10415	0.28	+1.6
2,201,152	-		DZA65_RS10415	0.28	+0.5
2,201,160	-		DZA65_RS10415	0.28	-0.6
2,201,352	+		DZA65_RS10415	0.34	-0.7
2,201,446	+		DZA65_RS10415	0.36	+0.2
2,201,536	-		DZA65_RS10415	0.38	-0.2
2,201,800	+		DZA65_RS10415	0.45	+1.2
2,201,800	+		DZA65_RS10415	0.45	-0.2
2,201,800	+		DZA65_RS10415	0.45	-0.2
2,201,801	-		DZA65_RS10415	0.45	+1.7
2,201,808	+		DZA65_RS10415	0.46	+0.1
2,201,809	-		DZA65_RS10415	0.46	+1.4
2,201,809	-		DZA65_RS10415	0.46	-0.4
2,201,809	-		DZA65_RS10415	0.46	+0.0
2,201,811	+		DZA65_RS10415	0.46	-1.0
2,201,812	-		DZA65_RS10415	0.46	+1.1
2,201,812	-		DZA65_RS10415	0.46	-2.0
2,201,812	-		DZA65_RS10415	0.46	-0.3
2,201,812	-		DZA65_RS10415	0.46	-1.0
2,201,820	+		DZA65_RS10415	0.46	+0.6
2,201,820	+		DZA65_RS10415	0.46	-0.4
2,201,820	+		DZA65_RS10415	0.46	+0.1
2,201,820	+		DZA65_RS10415	0.46	+1.9
2,201,821	-		DZA65_RS10415	0.46	-1.2
2,201,821	-		DZA65_RS10415	0.46	-0.1
2,201,821	-		DZA65_RS10415	0.46	-0.3
2,201,821	-		DZA65_RS10415	0.46	-0.5
2,201,821	-		DZA65_RS10415	0.46	-1.0
2,201,821	-		DZA65_RS10415	0.46	+0.1
2,201,822	+		DZA65_RS10415	0.46	+0.6
2,201,822	+		DZA65_RS10415	0.46	+0.1
2,202,113	-		DZA65_RS10415	0.54	-0.8
2,202,264	+		DZA65_RS10415	0.57	-0.1
2,202,264	+		DZA65_RS10415	0.57	-0.6
2,202,265	-		DZA65_RS10415	0.58	+0.3
2,202,393	+		DZA65_RS10415	0.61	+1.5
2,202,480	+		DZA65_RS10415	0.63	+0.4
2,202,480	+		DZA65_RS10415	0.63	+0.0
2,202,480	+		DZA65_RS10415	0.63	+0.1
2,202,480	+		DZA65_RS10415	0.63	+0.6
2,202,481	-		DZA65_RS10415	0.63	-1.2
2,202,481	-		DZA65_RS10415	0.63	+2.5
2,202,481	-		DZA65_RS10415	0.63	+0.4
2,202,481	-		DZA65_RS10415	0.63	+0.4
2,202,481	-		DZA65_RS10415	0.63	-1.0
2,202,481	-		DZA65_RS10415	0.63	-0.2
2,202,481	-		DZA65_RS10415	0.63	+0.3
2,202,486	+		DZA65_RS10415	0.63	+1.4
2,202,486	+		DZA65_RS10415	0.63	+0.5
2,202,487	-		DZA65_RS10415	0.63	+2.1
2,202,487	-		DZA65_RS10415	0.63	+1.4
2,202,487	-		DZA65_RS10415	0.63	-0.4
2,202,586	-		DZA65_RS10415	0.66	+1.4
2,202,586	-				+2.5
2,202,616	+		DZA65_RS10415	0.67	+0.3
2,202,617	-		DZA65_RS10415	0.67	+0.9
2,202,617	-		DZA65_RS10415	0.67	-1.1
2,202,620	+		DZA65_RS10415	0.67	-1.6
2,202,620	+		DZA65_RS10415	0.67	-0.1
2,202,621	-		DZA65_RS10415	0.67	-1.2
2,202,720	+		DZA65_RS10415	0.69	+1.7
2,202,720	+		DZA65_RS10415	0.69	-1.1
2,202,720	+		DZA65_RS10415	0.69	-0.2
2,202,720	+		DZA65_RS10415	0.69	-0.3
2,202,720	+		DZA65_RS10415	0.69	-2.0
2,202,720	+		DZA65_RS10415	0.69	-0.1
2,202,721	-		DZA65_RS10415	0.70	-0.5
2,202,721	-				+0.4
2,202,721	-		DZA65_RS10415	0.70	-0.0
2,202,721	-		DZA65_RS10415	0.70	-0.1
2,202,721	-		DZA65_RS10415	0.70	-0.6
2,202,721	-		DZA65_RS10415	0.70	+0.1
2,202,721	-		DZA65_RS10415	0.70	-0.2
2,202,723	+		DZA65_RS10415	0.70	+0.4
2,202,724	-		DZA65_RS10415	0.70	-1.6
2,202,724	-		DZA65_RS10415	0.70	+0.8
2,202,724	-		DZA65_RS10415	0.70	-1.2
2,202,724	-		DZA65_RS10415	0.70	-0.3
2,202,833	+		DZA65_RS10415	0.72	+1.4
2,202,833	+		DZA65_RS10415	0.72	+0.0
2,203,161	-		DZA65_RS10415	0.81	+0.1
2,203,272	+		DZA65_RS10415	0.84	+0.0
2,203,336	+		DZA65_RS10415	0.86	+0.2
2,203,336	+		DZA65_RS10415	0.86	-0.2
2,203,344	+		DZA65_RS10415	0.86	+0.6
2,203,344	+		DZA65_RS10415	0.86	+0.5
2,203,345	-		DZA65_RS10415	0.86	-1.0
2,203,345	-		DZA65_RS10415	0.86	-0.4
2,203,388	+		DZA65_RS10415	0.87	+1.8
2,203,388	+		DZA65_RS10415	0.87	-0.3
2,203,388	+		DZA65_RS10415	0.87	-0.2
2,203,388	+		DZA65_RS10415	0.87	+1.4
2,203,389	-		DZA65_RS10415	0.87	+0.2
2,203,389	-		DZA65_RS10415	0.87	+0.0
2,203,389	-		DZA65_RS10415	0.87	+0.4
2,203,600	+				+0.4
2,203,600	+				+1.1
2,203,658	-				-0.9
2,203,756	+				-0.5
2,203,756	+				-0.4
2,203,756	+				+1.5
2,203,757	-				+0.7
2,203,757	-				+1.9
2,203,933	-				+0.0
2,204,005	+				-0.1
2,204,006	-				+0.0
2,204,011	+				-0.2
2,204,011	+				-0.6
2,204,011	+				+0.2
2,204,011	+				-0.1
2,204,011	+				+0.8
2,204,011	+				+0.4
2,204,011	+				+0.9
2,204,011	+				+1.0
2,204,012	-				+0.6
2,204,012	-				+0.1
2,204,012	-				-0.5
2,204,012	-				+0.6
2,204,012	-				-0.2
2,204,012	-				+0.1
2,204,045	+				-1.8
2,204,045	+				+0.0
2,204,045	+				+2.1
2,204,045	+				+0.9
2,204,045	+				+0.2
2,204,045	+				+0.4
2,204,046	-				-0.5
2,204,046	-				+0.4
2,204,046	-				+1.4
2,204,046	-				-0.4
2,204,046	-				-0.5
2,204,046	-				-0.5
2,204,046	-				-2.0
2,204,047	+				-0.2
2,204,047	+				+0.3
2,204,090	+				-0.7
2,204,090	+				+0.9
2,204,090	+				+0.4
2,204,090	+				-1.4
2,204,090	+				+0.4
2,204,090	+				+0.7
2,204,090	+				+0.0
2,204,091	-				+0.4
2,204,091	-				-0.5
2,204,091	-				-0.9
2,204,091	-				+0.5
2,204,091	-				+0.4
2,204,091	-				+0.6
2,204,111	+				+1.4
2,204,111	+				-0.2
2,204,169	-				+0.9
2,204,169	-				-0.6
2,204,276	+		DZA65_RS10420	0.14	+0.0
2,204,276	+		DZA65_RS10420	0.14	+0.6
2,204,276	+		DZA65_RS10420	0.14	+0.9
2,204,276	+		DZA65_RS10420	0.14	+0.7
2,204,276	+		DZA65_RS10420	0.14	+1.2
2,204,318	+		DZA65_RS10420	0.15	-0.1
2,204,318	+		DZA65_RS10420	0.15	-1.4
2,204,319	-		DZA65_RS10420	0.15	+0.0
2,204,319	-		DZA65_RS10420	0.15	+0.4
2,204,319	-		DZA65_RS10420	0.15	-0.9
2,204,319	-		DZA65_RS10420	0.15	-2.8
2,204,392	-		DZA65_RS10420	0.18	+1.0
2,204,429	+		DZA65_RS10420	0.19	+0.1
2,204,429	+		DZA65_RS10420	0.19	+0.8
2,204,429	+		DZA65_RS10420	0.19	-0.6
2,204,473	+		DZA65_RS10420	0.20	+0.6
2,204,519	+		DZA65_RS10420	0.22	-0.3
2,204,549	+		DZA65_RS10420	0.23	-0.1
2,204,549	+		DZA65_RS10420	0.23	+0.2
2,204,550	-		DZA65_RS10420	0.23	+0.9
2,204,686	+		DZA65_RS10420	0.28	+1.5
2,204,687	-		DZA65_RS10420	0.28	-0.8
2,204,687	-		DZA65_RS10420	0.28	-0.4
2,204,687	-		DZA65_RS10420	0.28	-2.4
2,204,687	-		DZA65_RS10420	0.28	-1.4
2,204,835	+				+0.7
2,204,844	+		DZA65_RS10420	0.33	-1.4
2,204,844	+		DZA65_RS10420	0.33	+0.4
2,204,844	+		DZA65_RS10420	0.33	+0.8
2,204,844	+		DZA65_RS10420	0.33	+0.4
2,204,844	+		DZA65_RS10420	0.33	-0.9
2,204,845	-		DZA65_RS10420	0.33	-1.0
2,204,845	-		DZA65_RS10420	0.33	-0.2
2,204,845	-		DZA65_RS10420	0.33	+0.6
2,204,845	-		DZA65_RS10420	0.33	-0.2
2,204,845	-		DZA65_RS10420	0.33	+1.0
2,204,845	-		DZA65_RS10420	0.33	-1.1
2,204,845	-		DZA65_RS10420	0.33	+1.0
2,204,845	-		DZA65_RS10420	0.33	+0.8
2,204,850	+		DZA65_RS10420	0.33	-2.4
2,204,851	-		DZA65_RS10420	0.33	+0.8
2,204,880	+		DZA65_RS10420	0.34	+0.7