Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09245 and DZA65_RS09250 are separated by 1 nucleotides DZA65_RS09250 and DZA65_RS09255 are separated by 1 nucleotides DZA65_RS09255 and DZA65_RS09260 are separated by 227 nucleotides
DZA65_RS09245: DZA65_RS09245 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,949,985 to 1,951,370
_RS09245
DZA65_RS09250: DZA65_RS09250 - allophanate hydrolase subunit 1, at 1,951,372 to 1,952,256
_RS09250
DZA65_RS09255: DZA65_RS09255 - biotin-dependent carboxyltransferase, at 1,952,258 to 1,953,265
_RS09255
DZA65_RS09260: DZA65_RS09260 - allantoin permease, at 1,953,493 to 1,954,797
_RS09260
Position (kb) 1952
1953
1954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1951.301 kb on + strand at 1951.302 kb on - strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.393 kb on + strand at 1951.518 kb on + strand, within DZA65_RS09250 at 1951.519 kb on - strand, within DZA65_RS09250 at 1951.519 kb on - strand, within DZA65_RS09250 at 1951.603 kb on - strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.744 kb on + strand, within DZA65_RS09250 at 1951.744 kb on + strand, within DZA65_RS09250 at 1951.745 kb on - strand, within DZA65_RS09250 at 1951.817 kb on + strand, within DZA65_RS09250 at 1951.852 kb on - strand, within DZA65_RS09250 at 1951.852 kb on - strand, within DZA65_RS09250 at 1951.897 kb on + strand, within DZA65_RS09250 at 1951.898 kb on - strand, within DZA65_RS09250 at 1951.898 kb on - strand, within DZA65_RS09250 at 1951.898 kb on - strand at 1951.963 kb on + strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1952.020 kb on + strand, within DZA65_RS09250 at 1952.020 kb on + strand, within DZA65_RS09250 at 1952.021 kb on - strand, within DZA65_RS09250 at 1952.021 kb on - strand, within DZA65_RS09250 at 1952.044 kb on + strand, within DZA65_RS09250 at 1952.116 kb on + strand, within DZA65_RS09250 at 1952.116 kb on + strand, within DZA65_RS09250 at 1952.117 kb on - strand, within DZA65_RS09250 at 1952.174 kb on + strand at 1952.217 kb on + strand at 1952.224 kb on + strand at 1952.224 kb on + strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.242 kb on + strand at 1952.242 kb on + strand at 1952.243 kb on - strand at 1952.243 kb on - strand at 1952.254 kb on + strand at 1952.254 kb on + strand at 1952.254 kb on + strand at 1952.255 kb on - strand at 1952.255 kb on - strand at 1952.328 kb on + strand at 1952.328 kb on + strand at 1952.329 kb on - strand at 1952.329 kb on - strand at 1952.329 kb on - strand at 1952.351 kb on + strand at 1952.352 kb on - strand at 1952.352 kb on - strand at 1952.354 kb on + strand at 1952.354 kb on + strand at 1952.354 kb on + strand at 1952.355 kb on - strand at 1952.355 kb on - strand at 1952.355 kb on - strand at 1952.624 kb on + strand, within DZA65_RS09255 at 1952.624 kb on + strand, within DZA65_RS09255 at 1952.624 kb on + strand, within DZA65_RS09255 at 1952.625 kb on - strand, within DZA65_RS09255 at 1952.681 kb on + strand, within DZA65_RS09255 at 1952.682 kb on - strand, within DZA65_RS09255 at 1952.682 kb on - strand, within DZA65_RS09255 at 1952.683 kb on + strand, within DZA65_RS09255 at 1952.751 kb on + strand, within DZA65_RS09255 at 1952.846 kb on + strand, within DZA65_RS09255 at 1952.846 kb on + strand, within DZA65_RS09255 at 1952.846 kb on + strand, within DZA65_RS09255 at 1952.846 kb on + strand, within DZA65_RS09255 at 1952.846 kb on + strand, within DZA65_RS09255 at 1952.846 kb on + strand, within DZA65_RS09255 at 1952.847 kb on - strand, within DZA65_RS09255 at 1952.847 kb on - strand, within DZA65_RS09255 at 1952.847 kb on - strand, within DZA65_RS09255 at 1953.102 kb on - strand, within DZA65_RS09255 at 1953.102 kb on - strand, within DZA65_RS09255 at 1953.102 kb on - strand, within DZA65_RS09255 at 1953.102 kb on - strand, within DZA65_RS09255 at 1953.121 kb on + strand, within DZA65_RS09255 at 1953.122 kb on - strand, within DZA65_RS09255 at 1953.164 kb on + strand, within DZA65_RS09255 at 1953.165 kb on - strand at 1953.165 kb on - strand at 1953.283 kb on + strand at 1953.366 kb on + strand at 1953.367 kb on - strand at 1953.444 kb on + strand at 1953.444 kb on + strand at 1953.445 kb on - strand at 1953.445 kb on - strand at 1953.445 kb on - strand at 1953.466 kb on + strand at 1953.466 kb on + strand at 1953.467 kb on - strand at 1953.467 kb on - strand at 1953.470 kb on + strand at 1953.470 kb on + strand at 1953.470 kb on + strand at 1953.471 kb on - strand at 1953.503 kb on + strand at 1953.503 kb on + strand at 1953.503 kb on + strand at 1953.504 kb on - strand at 1953.504 kb on - strand at 1953.619 kb on + strand at 1953.619 kb on + strand at 1953.619 kb on + strand at 1953.620 kb on - strand at 1953.653 kb on - strand, within DZA65_RS09260 at 1953.832 kb on + strand, within DZA65_RS09260 at 1953.832 kb on + strand, within DZA65_RS09260 at 1953.832 kb on + strand, within DZA65_RS09260 at 1953.833 kb on - strand, within DZA65_RS09260 at 1953.833 kb on - strand, within DZA65_RS09260 at 1953.833 kb on - strand, within DZA65_RS09260 at 1953.833 kb on - strand, within DZA65_RS09260 at 1953.928 kb on + strand, within DZA65_RS09260 at 1953.928 kb on + strand, within DZA65_RS09260 at 1953.929 kb on - strand, within DZA65_RS09260 at 1953.929 kb on - strand, within DZA65_RS09260 at 1954.000 kb on + strand, within DZA65_RS09260 at 1954.046 kb on - strand, within DZA65_RS09260 at 1954.046 kb on - strand, within DZA65_RS09260 at 1954.097 kb on - strand, within DZA65_RS09260 at 1954.120 kb on + strand, within DZA65_RS09260 at 1954.120 kb on + strand, within DZA65_RS09260 at 1954.120 kb on + strand, within DZA65_RS09260 at 1954.121 kb on - strand, within DZA65_RS09260 at 1954.121 kb on - strand, within DZA65_RS09260 at 1954.121 kb on - strand, within DZA65_RS09260 at 1954.121 kb on - strand, within DZA65_RS09260 at 1954.121 kb on - strand, within DZA65_RS09260 at 1954.121 kb on - strand, within DZA65_RS09260 at 1954.121 kb on - strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.123 kb on + strand, within DZA65_RS09260 at 1954.124 kb on - strand, within DZA65_RS09260 at 1954.124 kb on - strand, within DZA65_RS09260 at 1954.124 kb on - strand, within DZA65_RS09260 at 1954.124 kb on - strand, within DZA65_RS09260 at 1954.124 kb on - strand, within DZA65_RS09260 at 1954.124 kb on - strand, within DZA65_RS09260 at 1954.124 kb on - strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.150 kb on + strand, within DZA65_RS09260 at 1954.151 kb on - strand, within DZA65_RS09260 at 1954.151 kb on - strand, within DZA65_RS09260 at 1954.151 kb on - strand, within DZA65_RS09260 at 1954.151 kb on - strand, within DZA65_RS09260 at 1954.151 kb on - strand, within DZA65_RS09260 at 1954.151 kb on - strand, within DZA65_RS09260 at 1954.151 kb on - strand, within DZA65_RS09260 at 1954.163 kb on - strand, within DZA65_RS09260 at 1954.196 kb on - strand, within DZA65_RS09260 at 1954.218 kb on + strand, within DZA65_RS09260 at 1954.228 kb on + strand, within DZA65_RS09260 at 1954.229 kb on - strand, within DZA65_RS09260 at 1954.229 kb on - strand, within DZA65_RS09260
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,951,301 + +0.1 1,951,302 - -1.5 1,951,388 + +0.0 1,951,388 + +0.7 1,951,388 + -0.2 1,951,388 + -0.8 1,951,388 + +0.8 1,951,389 - +1.5 1,951,389 - -2.5 1,951,389 - -0.2 1,951,389 - -0.1 1,951,389 - -0.7 1,951,393 + -1.4 1,951,518 + DZA65_RS09250 0.16 -0.3 1,951,519 - DZA65_RS09250 0.17 +0.3 1,951,519 - DZA65_RS09250 0.17 -0.2 1,951,603 - DZA65_RS09250 0.26 +0.1 1,951,666 + DZA65_RS09250 0.33 +0.6 1,951,666 + DZA65_RS09250 0.33 +0.9 1,951,666 + DZA65_RS09250 0.33 +1.0 1,951,667 - DZA65_RS09250 0.33 +0.3 1,951,667 - DZA65_RS09250 0.33 +0.3 1,951,667 - DZA65_RS09250 0.33 +0.9 1,951,667 - DZA65_RS09250 0.33 -0.8 1,951,667 - DZA65_RS09250 0.33 -0.5 1,951,744 + DZA65_RS09250 0.42 -0.3 1,951,744 + DZA65_RS09250 0.42 +1.4 1,951,745 - DZA65_RS09250 0.42 +0.6 1,951,817 + DZA65_RS09250 0.50 +0.3 1,951,852 - DZA65_RS09250 0.54 +0.2 1,951,852 - DZA65_RS09250 0.54 +1.2 1,951,897 + DZA65_RS09250 0.59 +0.1 1,951,898 - DZA65_RS09250 0.59 -1.5 1,951,898 - DZA65_RS09250 0.59 +0.1 1,951,898 - -1.2 1,951,963 + DZA65_RS09250 0.67 +0.1 1,951,964 - DZA65_RS09250 0.67 +1.2 1,951,964 - DZA65_RS09250 0.67 +0.2 1,951,964 - DZA65_RS09250 0.67 -1.7 1,952,020 + DZA65_RS09250 0.73 +0.8 1,952,020 + DZA65_RS09250 0.73 +0.0 1,952,021 - DZA65_RS09250 0.73 -0.4 1,952,021 - DZA65_RS09250 0.73 +0.3 1,952,044 + DZA65_RS09250 0.76 +1.2 1,952,116 + DZA65_RS09250 0.84 +0.5 1,952,116 + DZA65_RS09250 0.84 +2.2 1,952,117 - DZA65_RS09250 0.84 +2.1 1,952,174 + +0.0 1,952,217 + +1.5 1,952,224 + +0.1 1,952,224 + +0.8 1,952,225 - -2.0 1,952,225 - +0.5 1,952,225 - -0.5 1,952,225 - -1.0 1,952,225 - -2.5 1,952,225 - +0.7 1,952,225 - +0.3 1,952,242 + +1.0 1,952,242 + +0.2 1,952,243 - +0.3 1,952,243 - +0.3 1,952,254 + +0.8 1,952,254 + +0.3 1,952,254 + +0.3 1,952,255 - -1.0 1,952,255 - +1.1 1,952,328 + -0.2 1,952,328 + +0.6 1,952,329 - -1.2 1,952,329 - +0.1 1,952,329 - -0.7 1,952,351 + +0.6 1,952,352 - -0.4 1,952,352 - +0.2 1,952,354 + -0.4 1,952,354 + +0.4 1,952,354 + +0.1 1,952,355 - +0.8 1,952,355 - -1.1 1,952,355 - -1.2 1,952,624 + DZA65_RS09255 0.36 -0.2 1,952,624 + DZA65_RS09255 0.36 +0.0 1,952,624 + DZA65_RS09255 0.36 +0.7 1,952,625 - DZA65_RS09255 0.36 +0.8 1,952,681 + DZA65_RS09255 0.42 +1.5 1,952,682 - DZA65_RS09255 0.42 -0.2 1,952,682 - DZA65_RS09255 0.42 -0.4 1,952,683 + DZA65_RS09255 0.42 +1.0 1,952,751 + DZA65_RS09255 0.49 +1.5 1,952,846 + DZA65_RS09255 0.58 +0.2 1,952,846 + DZA65_RS09255 0.58 +0.7 1,952,846 + DZA65_RS09255 0.58 +2.7 1,952,846 + DZA65_RS09255 0.58 +1.8 1,952,846 + DZA65_RS09255 0.58 -0.9 1,952,846 + DZA65_RS09255 0.58 +0.3 1,952,847 - DZA65_RS09255 0.58 +0.6 1,952,847 - DZA65_RS09255 0.58 -0.1 1,952,847 - DZA65_RS09255 0.58 -0.7 1,953,102 - DZA65_RS09255 0.84 +1.3 1,953,102 - DZA65_RS09255 0.84 -0.5 1,953,102 - DZA65_RS09255 0.84 -0.4 1,953,102 - DZA65_RS09255 0.84 -0.7 1,953,121 + DZA65_RS09255 0.86 +1.2 1,953,122 - DZA65_RS09255 0.86 -0.9 1,953,164 + DZA65_RS09255 0.90 +1.0 1,953,165 - +0.8 1,953,165 - +1.3 1,953,283 + -1.8 1,953,366 + -1.2 1,953,367 - +1.6 1,953,444 + -0.7 1,953,444 + -0.9 1,953,445 - -2.0 1,953,445 - -1.1 1,953,445 - -1.2 1,953,466 + -2.2 1,953,466 + -2.0 1,953,467 - -0.9 1,953,467 - +0.9 1,953,470 + -1.2 1,953,470 + -0.9 1,953,470 + +0.0 1,953,471 - +0.1 1,953,503 + -0.4 1,953,503 + +0.2 1,953,503 + -2.2 1,953,504 - +0.6 1,953,504 - -2.1 1,953,619 + -1.5 1,953,619 + -2.0 1,953,619 + -0.1 1,953,620 - +0.2 1,953,653 - DZA65_RS09260 0.12 +0.0 1,953,832 + DZA65_RS09260 0.26 -0.8 1,953,832 + DZA65_RS09260 0.26 -1.8 1,953,832 + DZA65_RS09260 0.26 +0.9 1,953,833 - DZA65_RS09260 0.26 -0.7 1,953,833 - DZA65_RS09260 0.26 +0.8 1,953,833 - DZA65_RS09260 0.26 -0.2 1,953,833 - DZA65_RS09260 0.26 -1.2 1,953,928 + DZA65_RS09260 0.33 +0.1 1,953,928 + DZA65_RS09260 0.33 -1.5 1,953,929 - DZA65_RS09260 0.33 +0.2 1,953,929 - DZA65_RS09260 0.33 -2.2 1,954,000 + DZA65_RS09260 0.39 +0.9 1,954,046 - DZA65_RS09260 0.42 -0.5 1,954,046 - DZA65_RS09260 0.42 +0.0 1,954,097 - DZA65_RS09260 0.46 +0.3 1,954,120 + DZA65_RS09260 0.48 -1.0 1,954,120 + DZA65_RS09260 0.48 +1.3 1,954,120 + DZA65_RS09260 0.48 +0.8 1,954,121 - DZA65_RS09260 0.48 -2.6 1,954,121 - DZA65_RS09260 0.48 +0.6 1,954,121 - DZA65_RS09260 0.48 -0.1 1,954,121 - DZA65_RS09260 0.48 +0.1 1,954,121 - DZA65_RS09260 0.48 -0.7 1,954,121 - DZA65_RS09260 0.48 +1.0 1,954,121 - DZA65_RS09260 0.48 -0.8 1,954,123 + DZA65_RS09260 0.48 -0.5 1,954,123 + DZA65_RS09260 0.48 +0.1 1,954,123 + DZA65_RS09260 0.48 -0.1 1,954,123 + DZA65_RS09260 0.48 +0.3 1,954,123 + DZA65_RS09260 0.48 -0.2 1,954,123 + DZA65_RS09260 0.48 -0.8 1,954,123 + DZA65_RS09260 0.48 +0.3 1,954,123 + DZA65_RS09260 0.48 +0.2 1,954,123 + DZA65_RS09260 0.48 -0.9 1,954,124 - DZA65_RS09260 0.48 -0.2 1,954,124 - DZA65_RS09260 0.48 -0.2 1,954,124 - DZA65_RS09260 0.48 -0.2 1,954,124 - DZA65_RS09260 0.48 +0.1 1,954,124 - DZA65_RS09260 0.48 -1.0 1,954,124 - DZA65_RS09260 0.48 -0.4 1,954,124 - DZA65_RS09260 0.48 +0.6 1,954,150 + DZA65_RS09260 0.50 -1.7 1,954,150 + DZA65_RS09260 0.50 -0.3 1,954,150 + DZA65_RS09260 0.50 +0.7 1,954,150 + DZA65_RS09260 0.50 +0.1 1,954,150 + DZA65_RS09260 0.50 -0.5 1,954,150 + DZA65_RS09260 0.50 -0.3 1,954,150 + DZA65_RS09260 0.50 +0.5 1,954,150 + DZA65_RS09260 0.50 -0.7 1,954,150 + DZA65_RS09260 0.50 +0.8 1,954,151 - DZA65_RS09260 0.50 +1.3 1,954,151 - DZA65_RS09260 0.50 -0.7 1,954,151 - DZA65_RS09260 0.50 -0.1 1,954,151 - DZA65_RS09260 0.50 -0.7 1,954,151 - DZA65_RS09260 0.50 +0.3 1,954,151 - DZA65_RS09260 0.50 +1.6 1,954,151 - DZA65_RS09260 0.50 -1.7 1,954,163 - DZA65_RS09260 0.51 +1.2 1,954,196 - DZA65_RS09260 0.54 -1.7 1,954,218 + DZA65_RS09260 0.56 +0.1 1,954,228 + DZA65_RS09260 0.56 -0.5 1,954,229 - DZA65_RS09260 0.56 -0.4 1,954,229 - DZA65_RS09260 0.56 -0.0
Or see this region's nucleotide sequence