Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09200

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,941,125	+				-0.1
1,941,125	+				-1.2
1,941,125	+				-1.0
1,941,125	+				-1.4
1,941,126	-				+0.8
1,941,128	-				-1.7
1,941,189	+		DZA65_RS09195	0.10	+0.4
1,941,189	+		DZA65_RS09195	0.10	+0.2
1,941,189	+		DZA65_RS09195	0.10	-1.1
1,941,190	-		DZA65_RS09195	0.10	+0.8
1,941,344	-		DZA65_RS09195	0.34	+0.0
1,941,422	-				-1.7
1,941,458	-		DZA65_RS09195	0.51	-1.8
1,941,471	+		DZA65_RS09195	0.53	+1.3
1,941,471	+		DZA65_RS09195	0.53	-0.9
1,941,471	+		DZA65_RS09195	0.53	+1.0
1,941,472	-		DZA65_RS09195	0.53	+2.1
1,941,472	-		DZA65_RS09195	0.53	-1.4
1,941,472	-		DZA65_RS09195	0.53	+1.8
1,941,490	+		DZA65_RS09195	0.56	-0.1
1,941,490	+		DZA65_RS09195	0.56	-1.0
1,941,490	+		DZA65_RS09195	0.56	-0.3
1,941,490	+		DZA65_RS09195	0.56	-0.7
1,941,491	-		DZA65_RS09195	0.56	+1.7
1,941,491	-		DZA65_RS09195	0.56	-0.7
1,941,523	+		DZA65_RS09195	0.61	+0.9
1,941,558	+		DZA65_RS09195	0.66	-2.0
1,941,558	+		DZA65_RS09195	0.66	+0.1
1,941,559	-		DZA65_RS09195	0.66	+0.3
1,941,559	-		DZA65_RS09195	0.66	-2.0
1,941,562	+		DZA65_RS09195	0.67	+0.3
1,941,563	-		DZA65_RS09195	0.67	-0.5
1,941,607	+		DZA65_RS09195	0.73	-0.8
1,941,611	+		DZA65_RS09195	0.74	-0.2
1,941,633	-		DZA65_RS09195	0.77	-0.4
1,941,636	+		DZA65_RS09195	0.78	-3.0
1,941,677	+		DZA65_RS09195	0.84	-1.2
1,941,678	-		DZA65_RS09195	0.84	+1.2
1,941,678	-		DZA65_RS09195	0.84	+0.5
1,941,678	-		DZA65_RS09195	0.84	-0.2
1,941,763	+				-0.7
1,941,763	+				-0.1
1,941,798	+				+0.5
1,941,798	+				-0.1
1,941,798	+				+0.2
1,941,798	+				-1.0
1,941,799	-				-0.4
1,941,799	-				+0.3
1,941,799	-				+0.9
1,941,799	-				-1.0
1,941,799	-				+0.1
1,941,801	+				-0.1
1,941,812	+				+0.3
1,941,813	-				+0.6
1,941,813	-				-1.8
1,941,813	-				-0.2
1,941,813	-				-1.1
1,941,813	-				+1.8
1,941,872	+				+1.9
1,941,872	+				+0.1
1,941,873	-				-2.7
1,941,910	+				-0.7
1,941,929	+				-2.2
1,941,929	+				+0.3
1,941,948	+				+1.6
1,941,948	+				-1.0
1,941,948	+				+0.3
1,941,948	+				-1.2
1,941,949	-				+0.1
1,941,949	-				+0.9
1,941,949	-				-0.7
1,941,978	+				+1.1
1,941,990	+				+1.3
1,941,990	+				-0.3
1,941,990	+				+0.2
1,941,991	-				+0.6
1,941,991	-				-0.7
1,941,991	-				-0.8
1,942,029	-		DZA65_RS09200	0.11	+0.8
1,942,029	-		DZA65_RS09200	0.11	+0.6
1,942,068	-		DZA65_RS09200	0.16	+0.6
1,942,091	-		DZA65_RS09200	0.19	+0.3
1,942,140	+		DZA65_RS09200	0.26	+1.6
1,942,140	+		DZA65_RS09200	0.26	+0.2
1,942,140	+		DZA65_RS09200	0.26	+0.3
1,942,140	+		DZA65_RS09200	0.26	+1.0
1,942,141	-		DZA65_RS09200	0.26	+0.3
1,942,141	-		DZA65_RS09200	0.26	+0.8
1,942,200	+		DZA65_RS09200	0.34	-0.2
1,942,200	+		DZA65_RS09200	0.34	-0.3
1,942,200	+		DZA65_RS09200	0.34	+0.2
1,942,371	+		DZA65_RS09200	0.57	-0.9
1,942,371	+		DZA65_RS09200	0.57	+0.7
1,942,371	+		DZA65_RS09200	0.57	-0.5
1,942,371	+				+1.3
1,942,371	+		DZA65_RS09200	0.57	+0.2
1,942,372	-		DZA65_RS09200	0.57	+0.5
1,942,375	-		DZA65_RS09200	0.57	+1.1
1,942,500	+		DZA65_RS09200	0.74	+0.2
1,942,500	+		DZA65_RS09200	0.74	+0.2
1,942,500	+		DZA65_RS09200	0.74	+0.8
1,942,500	+		DZA65_RS09200	0.74	+1.3
1,942,501	-		DZA65_RS09200	0.74	-1.0
1,942,501	-		DZA65_RS09200	0.74	+0.4
1,942,501	-		DZA65_RS09200	0.74	+0.9
1,942,501	-		DZA65_RS09200	0.74	-0.3
1,942,557	+		DZA65_RS09200	0.82	+0.2
1,942,557	+		DZA65_RS09200	0.82	+3.5
1,942,557	+		DZA65_RS09200	0.82	+1.3
1,942,557	+		DZA65_RS09200	0.82	-0.9
1,942,558	-		DZA65_RS09200	0.82	+1.3
1,942,558	-		DZA65_RS09200	0.82	-0.6
1,942,558	-		DZA65_RS09200	0.82	+0.1
1,942,558	-		DZA65_RS09200	0.82	-0.7
1,942,678	+				-0.1
1,942,678	+				-0.7
1,942,679	-				+1.6
1,942,679	-				-1.8
1,942,682	+				+0.5
1,942,682	+				+1.5
1,942,682	+				-1.5
1,942,682	+				-0.4
1,942,683	-				+1.5
1,942,718	+				+0.3
1,942,718	+				-0.5
1,942,718	+				+0.8
1,942,718	+				+0.6
1,942,719	-				+0.5
1,942,719	-				+0.2
1,942,719	-				+0.5
1,942,720	+				+2.0
1,942,720	+				+0.5
1,942,720	+				-1.2
1,942,720	+				+0.9
1,942,720	+				-2.0
1,942,720	+				+1.3
1,942,720	+				+0.3
1,942,721	-				-1.6
1,942,721	-				-0.6
1,942,721	-				+0.3
1,942,721	-				-1.8
1,942,721	-				-1.3
1,942,721	-				-0.2
1,942,721	-				+0.1
1,942,721	-				-0.4
1,942,721	-				+1.1
1,942,722	+				-0.7
1,942,722	+				-1.2
1,942,722	+				+0.0
1,942,722	+				+0.9
1,942,722	+				-0.5
1,942,722	+				+0.2
1,942,723	-				-2.5
1,942,723	-				-0.8
1,942,723	-				+0.6
1,942,723	-				-1.7
1,942,723	-				-0.9
1,942,736	-				+1.7
1,942,745	+				-0.4
1,942,746	-				+0.3
1,942,887	+				-0.5
1,942,887	+				+2.3
1,942,887	+				+0.2
1,942,887	+				-0.3
1,942,888	-				+0.1
1,942,888	-				-0.4
1,942,888	-				+0.3
1,942,888	-				-1.1
1,942,888	-				+0.0
1,942,891	-				+2.2
1,942,904	+				+0.7
1,942,904	+				-1.1
1,942,904	+				+1.0
1,942,905	-				+1.3
1,942,905	-				-0.6
1,942,914	+				+0.1
1,942,935	+				-0.2
1,942,935	+				+0.5
1,942,935	+				+1.1
1,942,935	+				+1.0
1,942,936	-				+0.5
1,942,969	-				+1.5
1,942,969	-				-0.1
1,942,984	+				-0.4
1,942,985	-				-1.2
1,942,991	-				-0.2
1,942,991	-				+0.0
1,943,024	+				-0.7
1,943,024	+				+0.2
1,943,024	+				+0.8
1,943,024	+				+2.3
1,943,024	+				+1.1
1,943,024	+				-0.1
1,943,024	+				+0.3
1,943,024	+				-0.3
1,943,024	+				-1.7
1,943,024	+				-0.8
1,943,024	+				-0.5
1,943,024	+				-0.2
1,943,024	+				-1.2
1,943,024	+				-0.5
1,943,024	+				+0.9
1,943,024	+				-0.5
1,943,024	+				-2.8
1,943,024	+				-1.9
1,943,025	-				+0.6
1,943,025	-				+0.3
1,943,025	-				-0.5
1,943,025	-				-0.5
1,943,025	-				-0.6
1,943,025	-				-0.4
1,943,025	-				-0.4
1,943,025	-				-1.0
1,943,025	-				+0.7
1,943,025	-				-0.7
1,943,025	-				-0.0
1,943,025	-				-0.3
1,943,025	-				-1.6
1,943,025	-				-0.4
1,943,025	-				-1.0
1,943,025	-				+0.6
1,943,025	-				-1.5
1,943,025	-				-1.7
1,943,025	-				-0.9
1,943,025	-				+0.3
1,943,025	-				-2.2
1,943,025	-				-1.4
1,943,025	-				-1.2
1,943,025	-				-0.5
1,943,025	-				+0.1
1,943,025	-				-0.1
1,943,026	+				-1.0
1,943,026	+				-0.7
1,943,026	+				-0.3
1,943,026	+				-0.7
1,943,026	+				-1.5
1,943,026	+				-0.5
1,943,026	+				+0.4
1,943,026	+				-1.2
1,943,027	-				-0.1
1,943,027	-				-0.7
1,943,027	-				+1.9
1,943,027	-				-0.4
1,943,027	-				-1.2
1,943,027	-				-1.1
1,943,047	-				-0.7
1,943,067	+				-0.5
1,943,096	-				-1.7
1,943,114	+				+0.3
1,943,114	+				+0.5
1,943,114	+				+0.3
1,943,115	-				-2.8
1,943,115	-				-1.8
1,943,115	-				+0.6
1,943,115	-				-0.9
1,943,115	-				+1.9
1,943,115	-				+0.2
1,943,115	-				+0.1
1,943,224	+				-0.0
1,943,224	+				+0.3
1,943,224	+				-0.6
1,943,224	+				-0.1
1,943,225	-				+0.2
1,943,225	-				-0.8
1,943,377	+		DZA65_RS09205	0.37	-0.4
1,943,621	+		DZA65_RS09205	0.85	+0.5
1,943,654	+				-1.2
1,943,654	+				-0.1
1,943,676	+				-0.9
1,943,677	-				-0.2
1,943,691	-				+0.3
1,943,691	-				+0.7