Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09140

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,924,152	+		DZA65_RS09130	0.14	-0.0
1,924,153	-		DZA65_RS09130	0.14	+0.2
1,924,157	+		DZA65_RS09130	0.15	-0.1
1,924,157	+		DZA65_RS09130	0.15	-0.7
1,924,157	+		DZA65_RS09130	0.15	+2.3
1,924,158	-		DZA65_RS09130	0.15	-0.5
1,924,158	-		DZA65_RS09130	0.15	-0.5
1,924,158	-		DZA65_RS09130	0.15	+0.2
1,924,158	-		DZA65_RS09130	0.15	+0.3
1,924,158	-		DZA65_RS09130	0.15	-0.5
1,924,158	-		DZA65_RS09130	0.15	+1.7
1,924,158	-		DZA65_RS09130	0.15	-0.3
1,924,158	-		DZA65_RS09130	0.15	-0.7
1,924,158	-		DZA65_RS09130	0.15	-1.0
1,924,194	+		DZA65_RS09130	0.20	-0.2
1,924,195	-		DZA65_RS09130	0.20	-0.3
1,924,195	-		DZA65_RS09130	0.20	+0.5
1,924,227	+		DZA65_RS09130	0.25	-1.0
1,924,227	+		DZA65_RS09130	0.25	+0.3
1,924,227	+		DZA65_RS09130	0.25	+1.3
1,924,228	-		DZA65_RS09130	0.25	+0.3
1,924,316	+		DZA65_RS09130	0.38	-1.7
1,924,316	+		DZA65_RS09130	0.38	+0.1
1,924,316	+		DZA65_RS09130	0.38	+1.2
1,924,316	+		DZA65_RS09130	0.38	+0.0
1,924,316	+		DZA65_RS09130	0.38	+0.3
1,924,316	+		DZA65_RS09130	0.38	+1.3
1,924,317	-		DZA65_RS09130	0.38	-0.6
1,924,317	-		DZA65_RS09130	0.38	+0.6
1,924,317	-		DZA65_RS09130	0.38	-0.4
1,924,317	-		DZA65_RS09130	0.38	-0.7
1,924,331	+		DZA65_RS09130	0.40	-2.5
1,924,332	-		DZA65_RS09130	0.40	-0.5
1,924,382	+		DZA65_RS09130	0.48	+0.2
1,924,382	+		DZA65_RS09130	0.48	+0.8
1,924,382	+				-0.3
1,924,382	+		DZA65_RS09130	0.48	+1.1
1,924,383	-		DZA65_RS09130	0.48	-1.1
1,924,383	-		DZA65_RS09130	0.48	+1.2
1,924,524	+		DZA65_RS09130	0.68	-2.5
1,924,525	-		DZA65_RS09130	0.68	-1.7
1,924,694	+				-0.1
1,924,694	+				-3.0
1,924,694	+				-0.1
1,924,694	+				-1.3
1,924,695	-				-1.0
1,924,711	-				+0.6
1,924,717	+				-1.6
1,924,737	+				+0.3
1,924,737	+				+1.4
1,924,737	+				-0.1
1,924,737	+				-0.3
1,924,737	+				+0.7
1,924,737	+				+1.6
1,924,737	+				+0.6
1,924,737	+				-0.4
1,924,737	+				-0.8
1,924,737	+				-0.2
1,924,737	+				-1.3
1,924,737	+				-0.5
1,924,738	-				+0.9
1,924,738	-				-0.9
1,924,738	-				-0.1
1,924,738	-				+1.7
1,924,738	-				-2.5
1,924,738	-				-0.4
1,924,759	+				-2.0
1,924,760	-				+0.1
1,924,761	+				-0.1
1,924,761	+				-0.9
1,924,762	-				-0.5
1,924,762	-				-0.0
1,924,762	-				+0.3
1,924,762	-				+0.4
1,924,775	-				-1.1
1,924,781	+				-0.3
1,924,782	-				+0.5
1,924,782	-				-0.8
1,924,782	-				-0.5
1,924,782	-				-0.2
1,924,782	-				-2.0
1,924,792	+				-0.3
1,924,792	+				-0.3
1,924,792	+				+0.3
1,924,848	+				+0.1
1,924,848	+				+0.1
1,924,848	+				-0.7
1,924,848	+				+0.1
1,924,848	+				+0.3
1,924,849	-				+0.3
1,924,849	-				-0.5
1,924,849	-				+0.0
1,924,849	-				+1.0
1,924,849	-				+0.1
1,924,849	-				-0.8
1,924,849	-				-0.4
1,924,849	-				-0.3
1,924,849	-				-1.2
1,924,849	-				+0.1
1,924,849	-				-1.0
1,924,849	-				+0.5
1,924,849	-				-1.1
1,924,849	-				+1.3
1,924,849	-				-0.3
1,924,880	+				-0.1
1,924,881	-				-0.7
1,924,963	+				-0.8
1,924,964	-				+2.5
1,924,972	+				-0.7
1,924,972	+				-0.3
1,924,972	+				-0.5
1,924,974	+				+0.7
1,924,974	+				+0.3
1,924,974	+				+0.6
1,924,974	+				-2.2
1,924,974	+				-1.3
1,924,974	+				-0.4
1,924,975	-				-1.4
1,924,975	-				+0.3
1,924,975	-				-1.9
1,924,975	-				-1.2
1,924,975	-				+0.1
1,924,975	-				+0.2
1,924,975	-				-0.1
1,924,975	-				+0.1
1,924,975	-				+0.4
1,924,975	-				-0.8
1,924,976	+				-0.8
1,924,976	+				+1.0
1,924,976	+				-1.2
1,924,976	+				-1.2
1,924,976	+				+0.1
1,924,977	-				-1.2
1,924,977	-				+0.3
1,924,977	-				-2.0
1,924,977	-				-1.1
1,924,995	+				-2.7
1,924,995	+				+0.4
1,924,996	-				-0.1
1,924,996	-				+0.3
1,924,996	-				-1.1
1,924,996	-				+0.3
1,924,996	-				-0.3
1,924,996	-				-0.3
1,925,001	+				-0.5
1,925,001	+				-0.4
1,925,001	+				-2.5
1,925,001	+				+0.6
1,925,002	-				-1.2
1,925,002	-				+0.6
1,925,018	+				-0.3
1,925,102	-				-0.2
1,925,102	-				-2.2
1,925,102	-				+1.1
1,925,102	-				-0.1
1,925,122	+				+0.2
1,925,154	+		DZA65_RS09140	0.14	-0.3
1,925,154	+		DZA65_RS09140	0.14	-1.2
1,925,154	+		DZA65_RS09140	0.14	-2.0
1,925,154	+		DZA65_RS09140	0.14	-0.2
1,925,155	-		DZA65_RS09140	0.14	-0.2
1,925,155	-		DZA65_RS09140	0.14	-2.7
1,925,155	-		DZA65_RS09140	0.14	+0.8
1,925,155	-		DZA65_RS09140	0.14	+1.1
1,925,155	-				+1.1
1,925,155	-				-0.2
1,925,158	+		DZA65_RS09140	0.14	-1.2
1,925,158	+		DZA65_RS09140	0.14	-0.7
1,925,159	-		DZA65_RS09140	0.14	+1.3
1,925,177	+				-1.2
1,925,182	+		DZA65_RS09140	0.17	-0.2
1,925,182	+		DZA65_RS09140	0.17	-0.2
1,925,182	+		DZA65_RS09140	0.17	+0.7
1,925,183	-		DZA65_RS09140	0.17	+0.5
1,925,183	-		DZA65_RS09140	0.17	+0.1
1,925,444	+		DZA65_RS09140	0.51	-1.4
1,925,473	+		DZA65_RS09140	0.55	-0.5
1,925,474	-		DZA65_RS09140	0.55	-0.7
1,925,474	-		DZA65_RS09140	0.55	-2.2
1,925,474	-		DZA65_RS09140	0.55	-1.0
1,925,474	-		DZA65_RS09140	0.55	+0.3
1,925,474	-				+1.7
1,925,537	-		DZA65_RS09140	0.63	-0.6
1,925,540	+		DZA65_RS09140	0.63	+1.3
1,925,558	+		DZA65_RS09140	0.66	-1.0
1,925,568	-		DZA65_RS09140	0.67	-0.7
1,925,568	-		DZA65_RS09140	0.67	-2.8
1,925,864	+				-1.1
1,925,864	+				+1.6
1,925,865	-				+0.5
1,925,866	+				-0.9
1,925,866	+				-0.5
1,925,867	-				+0.7
1,925,867	-				+0.1
1,925,938	+				-0.2
1,925,938	+				-0.7
1,925,939	-				+0.0
1,925,939	-				-0.1
1,925,939	-				+0.3
1,926,148	+				-0.5
1,926,148	+				+1.5
1,926,149	-				+0.7
1,926,149	-				+0.1
1,926,188	+				+0.1
1,926,189	-				-0.8
1,926,189	-				-1.5
1,926,191	+				+0.2
1,926,191	+				-0.1
1,926,192	-				-0.1
1,926,192	-				+1.8
1,926,192	-				-2.2
1,926,207	+				-1.2
1,926,207	+				-2.7
1,926,207	+				-1.2
1,926,207	+				-1.5
1,926,207	+				-0.2
1,926,207	+				-1.7
1,926,208	-				+1.2
1,926,208	-				+0.9
1,926,208	-				+0.1
1,926,244	+				-0.2
1,926,244	+				-1.0
1,926,244	+				+0.7
1,926,244	+				+0.3
1,926,244	+				+0.3
1,926,245	-				-0.3
1,926,245	-				+0.1
1,926,253	+				+1.3
1,926,395	+		DZA65_RS09145	0.13	+0.2
1,926,395	+		DZA65_RS09145	0.13	+1.0
1,926,395	+		DZA65_RS09145	0.13	-0.7
1,926,395	+		DZA65_RS09145	0.13	+0.9
1,926,395	+		DZA65_RS09145	0.13	+0.4
1,926,395	+		DZA65_RS09145	0.13	-1.7
1,926,396	-		DZA65_RS09145	0.13	-0.6
1,926,396	-		DZA65_RS09145	0.13	-3.2
1,926,396	-		DZA65_RS09145	0.13	+2.0
1,926,434	+		DZA65_RS09145	0.15	-0.5
1,926,434	+		DZA65_RS09145	0.15	-0.5
1,926,435	-		DZA65_RS09145	0.16	-0.5
1,926,435	-		DZA65_RS09145	0.16	-0.2
1,926,435	-		DZA65_RS09145	0.16	-0.7
1,926,435	-		DZA65_RS09145	0.16	-1.2
1,926,435	-		DZA65_RS09145	0.16	-0.1
1,926,435	-		DZA65_RS09145	0.16	-1.1
1,926,435	-		DZA65_RS09145	0.16	-0.4
1,926,487	-		DZA65_RS09145	0.19	-0.5
1,926,524	+		DZA65_RS09145	0.22	+1.3
1,926,548	+		DZA65_RS09145	0.24	-0.6
1,926,548	+		DZA65_RS09145	0.24	+0.4
1,926,549	-		DZA65_RS09145	0.24	-0.3
1,926,549	-		DZA65_RS09145	0.24	+0.6
1,926,599	+		DZA65_RS09145	0.28	-2.0
1,926,599	+		DZA65_RS09145	0.28	+0.3
1,926,599	+		DZA65_RS09145	0.28	-1.1
1,926,599	+		DZA65_RS09145	0.28	+0.1
1,926,599	+		DZA65_RS09145	0.28	-0.2
1,926,599	+		DZA65_RS09145	0.28	-0.7
1,926,599	+		DZA65_RS09145	0.28	+0.3
1,926,599	+		DZA65_RS09145	0.28	-0.7
1,926,599	+		DZA65_RS09145	0.28	+0.8
1,926,599	+		DZA65_RS09145	0.28	-0.1
1,926,599	+		DZA65_RS09145	0.28	+0.6
1,926,599	+		DZA65_RS09145	0.28	-1.9
1,926,599	+		DZA65_RS09145	0.28	-2.2
1,926,599	+		DZA65_RS09145	0.28	+0.3
1,926,599	+		DZA65_RS09145	0.28	-0.7
1,926,600	-		DZA65_RS09145	0.28	-1.7
1,926,600	-		DZA65_RS09145	0.28	-0.7
1,926,600	-		DZA65_RS09145	0.28	+0.6
1,926,600	-		DZA65_RS09145	0.28	-0.9
1,926,600	-		DZA65_RS09145	0.28	-0.0
1,926,600	-		DZA65_RS09145	0.28	+0.9
1,926,600	-		DZA65_RS09145	0.28	+0.3
1,926,600	-		DZA65_RS09145	0.28	+1.1
1,926,600	-		DZA65_RS09145	0.28	+1.5
1,926,600	-		DZA65_RS09145	0.28	-1.1
1,926,600	-		DZA65_RS09145	0.28	-2.2
1,926,600	-		DZA65_RS09145	0.28	+0.3
1,926,600	-		DZA65_RS09145	0.28	-0.7
1,926,600	-		DZA65_RS09145	0.28	-0.1
1,926,600	-		DZA65_RS09145	0.28	-1.1
1,926,600	-		DZA65_RS09145	0.28	+0.1
1,926,607	+		DZA65_RS09145	0.28	+0.3
1,926,607	+		DZA65_RS09145	0.28	-0.2
1,926,653	+		DZA65_RS09145	0.32	+0.1
1,926,654	-		DZA65_RS09145	0.32	-0.5
1,926,654	-		DZA65_RS09145	0.32	-0.7
1,926,674	-		DZA65_RS09145	0.33	+0.7
1,926,792	-		DZA65_RS09145	0.42	-0.2