Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09100

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,915,798	+				-0.5
1,915,799	-				-0.7
1,915,805	+				+0.2
1,915,805	+				-1.1
1,915,806	-				-1.0
1,915,850	-				-2.0
1,915,850	-				-1.5
1,915,954	+		DZA65_RS09095	0.37	+0.3
1,916,004	-		DZA65_RS09095	0.54	-2.0
1,916,066	+		DZA65_RS09095	0.75	-1.3
1,916,067	-		DZA65_RS09095	0.75	+1.7
1,916,102	+		DZA65_RS09095	0.87	-0.7
1,916,102	+		DZA65_RS09095	0.87	+1.3
1,916,103	-		DZA65_RS09095	0.87	-0.0
1,916,121	+				-0.2
1,916,146	+				+0.3
1,916,186	-				+0.7
1,916,187	+				+0.0
1,916,187	+				-1.4
1,916,187	+				-1.5
1,916,188	-				+0.0
1,916,188	-				+0.1
1,916,197	+				+1.9
1,916,198	-				-0.5
1,916,227	+				-0.3
1,916,227	+				+0.5
1,916,227	+				+0.7
1,916,284	+				-1.3
1,916,299	-				-0.7
1,916,299	-				+0.3
1,916,299	-				-0.7
1,916,299	-				-0.6
1,916,344	+				-0.4
1,916,344	+				+0.6
1,916,345	-				+0.1
1,916,345	-				-1.5
1,916,462	+				-0.3
1,916,463	-				-0.1
1,916,482	+				-0.5
1,916,482	+				-2.0
1,916,598	-				-0.3
1,916,624	+				-1.4
1,916,625	-				+0.6
1,916,647	-				-1.9
1,916,662	+				-1.1
1,916,662	+				-0.3
1,916,663	-				-0.2
1,916,665	+				+0.4
1,916,665	+				-0.7
1,916,665	+				+0.6
1,916,665	+				+1.1
1,916,665	+				-1.4
1,916,665	+				-0.4
1,916,665	+				-0.1
1,916,665	+				+0.4
1,916,665	+				-0.1
1,916,666	-				+0.7
1,916,666	-				+0.7
1,916,666	-				+2.1
1,916,666	-				-1.3
1,916,666	-				+0.7
1,916,666	-				+0.3
1,916,675	+				-1.3
1,916,676	-				-0.4
1,916,676	-				-0.1
1,916,676	-				-1.5
1,916,790	+		DZA65_RS09100	0.17	+1.1
1,916,790	+		DZA65_RS09100	0.17	-0.6
1,916,790	+		DZA65_RS09100	0.17	-0.1
1,916,790	+		DZA65_RS09100	0.17	-0.3
1,916,790	+		DZA65_RS09100	0.17	+1.5
1,916,790	+		DZA65_RS09100	0.17	+0.3
1,916,791	-		DZA65_RS09100	0.18	-0.2
1,916,791	-		DZA65_RS09100	0.18	-2.5
1,916,791	-		DZA65_RS09100	0.18	-1.1
1,916,791	-		DZA65_RS09100	0.18	-1.3
1,916,791	-		DZA65_RS09100	0.18	-0.3
1,916,791	-		DZA65_RS09100	0.18	+0.9
1,916,791	-		DZA65_RS09100	0.18	+1.1
1,916,791	-		DZA65_RS09100	0.18	-0.9
1,916,791	-		DZA65_RS09100	0.18	+1.3
1,916,791	-		DZA65_RS09100	0.18	+0.3
1,916,791	-		DZA65_RS09100	0.18	+0.1
1,916,791	-		DZA65_RS09100	0.18	+0.1
1,916,814	+		DZA65_RS09100	0.20	+1.4
1,916,814	+		DZA65_RS09100	0.20	+0.8
1,916,815	-		DZA65_RS09100	0.20	-0.0
1,916,815	-		DZA65_RS09100	0.20	-0.0
1,916,931	+		DZA65_RS09100	0.34	-0.4
1,916,931	+		DZA65_RS09100	0.34	+0.4
1,916,931	+		DZA65_RS09100	0.34	-0.9
1,916,932	-		DZA65_RS09100	0.34	+0.6
1,916,937	-		DZA65_RS09100	0.34	+0.1
1,917,045	+		DZA65_RS09100	0.47	+1.3
1,917,100	+		DZA65_RS09100	0.53	+0.8
1,917,100	+		DZA65_RS09100	0.53	-0.3
1,917,100	+		DZA65_RS09100	0.53	-3.1
1,917,101	-		DZA65_RS09100	0.53	-0.6
1,917,131	+		DZA65_RS09100	0.56	+0.7
1,917,131	+		DZA65_RS09100	0.56	-0.3
1,917,132	-		DZA65_RS09100	0.57	-2.8
1,917,132	-		DZA65_RS09100	0.57	-1.7
1,917,132	-		DZA65_RS09100	0.57	+0.9
1,917,145	-		DZA65_RS09100	0.58	-0.2
1,917,339	+		DZA65_RS09100	0.80	+0.4
1,917,339	+		DZA65_RS09100	0.80	-0.1
1,917,339	+		DZA65_RS09100	0.80	+0.2
1,917,339	+		DZA65_RS09100	0.80	-0.4
1,917,339	+		DZA65_RS09100	0.80	-1.1
1,917,339	+		DZA65_RS09100	0.80	+0.2
1,917,339	+		DZA65_RS09100	0.80	+0.0
1,917,339	+		DZA65_RS09100	0.80	+1.1
1,917,339	+		DZA65_RS09100	0.80	+0.3
1,917,340	-		DZA65_RS09100	0.80	+0.6
1,917,340	-		DZA65_RS09100	0.80	+0.1
1,917,340	-		DZA65_RS09100	0.80	+1.3
1,917,340	-		DZA65_RS09100	0.80	+1.6
1,917,340	-		DZA65_RS09100	0.80	+0.7
1,917,537	+				-0.5
1,917,537	+				+1.0
1,917,641	+		DZA65_RS09105	0.11	-0.4
1,917,641	+		DZA65_RS09105	0.11	+0.3
1,917,641	+		DZA65_RS09105	0.11	+1.5
1,917,641	+		DZA65_RS09105	0.11	-0.7
1,917,642	-		DZA65_RS09105	0.11	-0.2
1,917,642	-		DZA65_RS09105	0.11	-1.9
1,917,714	-		DZA65_RS09105	0.17	-1.0
1,917,782	-		DZA65_RS09105	0.22	-0.4
1,917,782	-		DZA65_RS09105	0.22	-1.0
1,917,782	-		DZA65_RS09105	0.22	-1.7
1,917,782	-		DZA65_RS09105	0.22	-1.3
1,917,782	-		DZA65_RS09105	0.22	+0.3
1,917,782	-		DZA65_RS09105	0.22	-0.3
1,917,782	-		DZA65_RS09105	0.22	+1.5
1,917,782	-		DZA65_RS09105	0.22	+0.2
1,917,820	+		DZA65_RS09105	0.25	+0.8
1,917,852	+		DZA65_RS09105	0.28	-0.6
1,917,852	+		DZA65_RS09105	0.28	+0.7
1,917,852	+		DZA65_RS09105	0.28	-0.4
1,917,853	-		DZA65_RS09105	0.28	+0.1
1,917,853	-		DZA65_RS09105	0.28	-1.3
1,917,853	-		DZA65_RS09105	0.28	+0.3
1,917,864	-		DZA65_RS09105	0.29	+0.0
1,917,864	-		DZA65_RS09105	0.29	+0.3
1,917,939	-		DZA65_RS09105	0.35	+0.1
1,917,939	-		DZA65_RS09105	0.35	-1.0
1,917,955	+		DZA65_RS09105	0.36	+1.5
1,917,955	+		DZA65_RS09105	0.36	+0.1
1,917,955	+		DZA65_RS09105	0.36	-1.3
1,917,956	-		DZA65_RS09105	0.36	+0.7
1,917,956	-		DZA65_RS09105	0.36	-0.1
1,917,956	-		DZA65_RS09105	0.36	+0.3
1,918,109	+		DZA65_RS09105	0.49	-1.5
1,918,120	+		DZA65_RS09105	0.50	+0.6
1,918,120	+		DZA65_RS09105	0.50	-0.7
1,918,121	-		DZA65_RS09105	0.50	-1.4
1,918,121	-		DZA65_RS09105	0.50	+1.1
1,918,121	-		DZA65_RS09105	0.50	-0.5
1,918,157	-		DZA65_RS09105	0.53	+0.7
1,918,349	+		DZA65_RS09105	0.68	-1.1
1,918,421	+		DZA65_RS09105	0.74	-0.1
1,918,422	-		DZA65_RS09105	0.74	-0.4
1,918,422	-		DZA65_RS09105	0.74	+0.3
1,918,422	-		DZA65_RS09105	0.74	+0.2
1,918,442	+		DZA65_RS09105	0.76	-2.8