Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09060

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,906,883	+		DZA65_RS09055	0.17	-0.9
1,906,883	+				+1.3
1,906,883	+		DZA65_RS09055	0.17	+0.1
1,906,884	-		DZA65_RS09055	0.17	+0.2
1,906,903	+		DZA65_RS09055	0.19	-0.0
1,906,928	+		DZA65_RS09055	0.21	-1.3
1,906,942	-		DZA65_RS09055	0.22	+0.3
1,907,017	+		DZA65_RS09055	0.29	-1.1
1,907,017	+		DZA65_RS09055	0.29	+0.1
1,907,018	-		DZA65_RS09055	0.29	-0.6
1,907,025	+		DZA65_RS09055	0.30	+0.3
1,907,025	+		DZA65_RS09055	0.30	-1.0
1,907,026	-		DZA65_RS09055	0.30	+0.8
1,907,026	-		DZA65_RS09055	0.30	-0.7
1,907,026	-		DZA65_RS09055	0.30	+1.3
1,907,035	+		DZA65_RS09055	0.30	+0.8
1,907,099	+		DZA65_RS09055	0.36	+0.5
1,907,099	+		DZA65_RS09055	0.36	-0.6
1,907,293	+		DZA65_RS09055	0.54	+0.4
1,907,294	-		DZA65_RS09055	0.54	-0.1
1,907,309	+		DZA65_RS09055	0.55	+0.2
1,907,310	-		DZA65_RS09055	0.55	+0.7
1,907,310	-		DZA65_RS09055	0.55	-1.7
1,907,311	+		DZA65_RS09055	0.55	-2.0
1,907,311	+		DZA65_RS09055	0.55	+0.6
1,907,311	+		DZA65_RS09055	0.55	-0.7
1,907,311	+				+0.9
1,907,311	+		DZA65_RS09055	0.55	+0.1
1,907,311	+		DZA65_RS09055	0.55	-0.4
1,907,311	+		DZA65_RS09055	0.55	+1.0
1,907,311	+		DZA65_RS09055	0.55	-0.3
1,907,311	+		DZA65_RS09055	0.55	+0.2
1,907,311	+		DZA65_RS09055	0.55	+1.3
1,907,311	+		DZA65_RS09055	0.55	-0.6
1,907,312	-		DZA65_RS09055	0.55	+0.4
1,907,312	-		DZA65_RS09055	0.55	-1.5
1,907,312	-		DZA65_RS09055	0.55	+0.5
1,907,312	-		DZA65_RS09055	0.55	-0.3
1,907,312	-		DZA65_RS09055	0.55	-0.6
1,907,312	-		DZA65_RS09055	0.55	+0.8
1,907,312	-		DZA65_RS09055	0.55	+0.2
1,907,312	-		DZA65_RS09055	0.55	+0.3
1,907,312	-		DZA65_RS09055	0.55	+0.3
1,907,312	-		DZA65_RS09055	0.55	+0.5
1,907,378	-		DZA65_RS09055	0.61	-0.4
1,907,402	-		DZA65_RS09055	0.64	+0.2
1,907,402	-		DZA65_RS09055	0.64	+0.6
1,907,647	+		DZA65_RS09055	0.86	+0.6
1,907,647	+		DZA65_RS09055	0.86	+0.7
1,907,648	-		DZA65_RS09055	0.86	+1.1
1,907,648	-		DZA65_RS09055	0.86	-0.9
1,907,798	-				+0.3
1,907,804	+				-0.7
1,907,804	+				-1.7
1,907,805	-				+0.2
1,907,805	-				+0.0
1,907,805	-				-0.2
1,907,831	+				+0.3
1,907,831	+				-2.7
1,907,831	+				+1.1
1,907,831	+				+0.3
1,907,831	+				-0.1
1,907,832	-				-0.2
1,907,832	-				+1.2
1,907,832	-				-0.7
1,907,832	-				+1.7
1,907,835	+				-0.7
1,907,835	+				-1.1
1,907,835	+				-1.7
1,907,835	+				+0.3
1,907,835	+				+0.3
1,907,835	+				-0.3
1,907,835	+				+1.6
1,907,835	+				+0.0
1,907,835	+				-1.0
1,907,836	-				+0.9
1,907,836	-				-0.1
1,907,836	-				-2.0
1,907,836	-				-0.5
1,907,836	-				+0.1
1,907,836	-				+0.7
1,907,968	-				+0.7
1,907,968	-				+0.4
1,907,997	+		DZA65_RS09060	0.11	-1.4
1,907,997	+		DZA65_RS09060	0.11	-0.1
1,907,998	-		DZA65_RS09060	0.11	+0.9
1,907,998	-		DZA65_RS09060	0.11	-0.5
1,907,998	-		DZA65_RS09060	0.11	-0.1
1,908,026	+		DZA65_RS09060	0.14	+1.7
1,908,026	+		DZA65_RS09060	0.14	-0.0
1,908,027	-		DZA65_RS09060	0.14	+1.6
1,908,027	-		DZA65_RS09060	0.14	+0.3
1,908,054	+		DZA65_RS09060	0.16	-0.5
1,908,054	+		DZA65_RS09060	0.16	-1.3
1,908,055	-		DZA65_RS09060	0.16	-0.4
1,908,055	-		DZA65_RS09060	0.16	+0.3
1,908,055	-		DZA65_RS09060	0.16	+0.1
1,908,055	-		DZA65_RS09060	0.16	-0.1
1,908,202	+		DZA65_RS09060	0.29	-1.8
1,908,202	+		DZA65_RS09060	0.29	+1.3
1,908,202	+		DZA65_RS09060	0.29	+1.3
1,908,203	-		DZA65_RS09060	0.29	-1.5
1,908,203	-		DZA65_RS09060	0.29	+0.8
1,908,203	-		DZA65_RS09060	0.29	+1.1
1,908,234	-		DZA65_RS09060	0.32	+0.8
1,908,253	+				-0.3
1,908,253	+		DZA65_RS09060	0.34	+1.5
1,908,299	+		DZA65_RS09060	0.38	+1.0
1,908,299	+		DZA65_RS09060	0.38	-1.7
1,908,299	+		DZA65_RS09060	0.38	-0.4
1,908,299	+		DZA65_RS09060	0.38	-0.0
1,908,299	+		DZA65_RS09060	0.38	-1.3
1,908,299	+		DZA65_RS09060	0.38	+0.9
1,908,299	+		DZA65_RS09060	0.38	+1.1
1,908,299	+		DZA65_RS09060	0.38	+0.3
1,908,300	-		DZA65_RS09060	0.38	+0.2
1,908,300	-		DZA65_RS09060	0.38	-0.3
1,908,300	-		DZA65_RS09060	0.38	+0.4
1,908,300	-		DZA65_RS09060	0.38	-1.1
1,908,300	-		DZA65_RS09060	0.38	-0.0
1,908,300	-		DZA65_RS09060	0.38	-0.3
1,908,302	+		DZA65_RS09060	0.38	+0.3
1,908,302	+		DZA65_RS09060	0.38	+0.9
1,908,310	+		DZA65_RS09060	0.38	+0.1
1,908,311	-		DZA65_RS09060	0.39	-3.1
1,908,438	+		DZA65_RS09060	0.50	+0.1
1,908,438	+		DZA65_RS09060	0.50	-0.1
1,908,438	+		DZA65_RS09060	0.50	-0.7
1,908,438	+		DZA65_RS09060	0.50	-4.1
1,908,439	-		DZA65_RS09060	0.50	-0.9
1,908,441	+		DZA65_RS09060	0.50	+1.1
1,908,441	+		DZA65_RS09060	0.50	+0.2
1,908,441	+		DZA65_RS09060	0.50	-1.0
1,908,442	-		DZA65_RS09060	0.50	-1.0
1,908,442	-		DZA65_RS09060	0.50	-0.1
1,908,442	-		DZA65_RS09060	0.50	-0.5
1,908,521	+		DZA65_RS09060	0.57	+0.3
1,908,546	-		DZA65_RS09060	0.59	+1.3
1,908,568	+		DZA65_RS09060	0.61	-0.6
1,908,569	-		DZA65_RS09060	0.61	+0.5
1,908,582	-		DZA65_RS09060	0.62	-1.8
1,909,032	+				+1.0
1,909,033	-				+1.6
1,909,033	-				-2.7
1,909,033	-				+0.7
1,909,033	-				+0.3
1,909,033	-				-0.6
1,909,081	+				+0.5
1,909,082	-				-0.4
1,909,146	+				+0.0
1,909,146	+				+0.3
1,909,171	-				+0.1
1,909,426	+		DZA65_RS09065	0.24	-0.1
1,909,427	-				+1.3
1,909,427	-		DZA65_RS09065	0.24	-1.5
1,909,427	-		DZA65_RS09065	0.24	-2.3
1,909,954	-		DZA65_RS09065	0.55	+1.8
1,909,954	-		DZA65_RS09065	0.55	-0.1
1,909,954	-		DZA65_RS09065	0.55	+0.8