Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08970

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,889,124	+		DZA65_RS08965	0.13	-0.6
1,889,162	+		DZA65_RS08965	0.17	+0.3
1,889,162	+		DZA65_RS08965	0.17	+2.1
1,889,163	-		DZA65_RS08965	0.17	+0.2
1,889,163	-		DZA65_RS08965	0.17	-2.0
1,889,315	-		DZA65_RS08965	0.32	-1.7
1,889,435	+		DZA65_RS08965	0.43	-1.3
1,889,435	+		DZA65_RS08965	0.43	-0.8
1,889,436	-		DZA65_RS08965	0.43	-0.1
1,889,436	-		DZA65_RS08965	0.43	+1.2
1,889,436	-		DZA65_RS08965	0.43	-1.3
1,889,443	+		DZA65_RS08965	0.44	+0.2
1,889,443	+		DZA65_RS08965	0.44	+0.7
1,889,444	-		DZA65_RS08965	0.44	+0.9
1,889,444	-		DZA65_RS08965	0.44	+1.5
1,889,444	-		DZA65_RS08965	0.44	+0.3
1,889,444	-		DZA65_RS08965	0.44	+0.1
1,889,444	-		DZA65_RS08965	0.44	-0.2
1,889,444	-		DZA65_RS08965	0.44	+0.6
1,889,444	-		DZA65_RS08965	0.44	-0.6
1,889,468	+		DZA65_RS08965	0.46	-2.7
1,889,469	-		DZA65_RS08965	0.46	+0.4
1,889,476	+		DZA65_RS08965	0.47	-0.0
1,889,476	+		DZA65_RS08965	0.47	-0.5
1,889,477	-		DZA65_RS08965	0.47	+0.5
1,889,477	-		DZA65_RS08965	0.47	-1.7
1,889,477	-		DZA65_RS08965	0.47	-0.3
1,889,477	-		DZA65_RS08965	0.47	+1.1
1,889,491	+		DZA65_RS08965	0.48	-2.5
1,889,491	+		DZA65_RS08965	0.48	+0.6
1,889,492	-		DZA65_RS08965	0.49	-1.1
1,889,495	+		DZA65_RS08965	0.49	-0.5
1,889,495	+		DZA65_RS08965	0.49	+0.1
1,889,495	+		DZA65_RS08965	0.49	+0.6
1,889,496	-		DZA65_RS08965	0.49	+0.7
1,889,496	-		DZA65_RS08965	0.49	-1.0
1,889,512	+		DZA65_RS08965	0.50	-0.3
1,889,512	+		DZA65_RS08965	0.50	-1.7
1,889,513	-		DZA65_RS08965	0.51	+0.1
1,889,513	-		DZA65_RS08965	0.51	-1.5
1,889,759	+		DZA65_RS08965	0.74	-0.7
1,889,759	+		DZA65_RS08965	0.74	+0.3
1,889,759	+		DZA65_RS08965	0.74	-0.2
1,889,759	+		DZA65_RS08965	0.74	+0.2
1,889,760	-		DZA65_RS08965	0.74	-2.0
1,889,760	-		DZA65_RS08965	0.74	-1.7
1,889,760	-		DZA65_RS08965	0.74	-0.3
1,889,760	-		DZA65_RS08965	0.74	-0.2
1,889,760	-				-0.7
1,889,917	+		DZA65_RS08965	0.89	+1.5
1,889,917	+		DZA65_RS08965	0.89	-0.3
1,889,943	-				+0.1
1,890,005	+				+0.3
1,890,005	+				-0.7
1,890,005	+				+0.3
1,890,005	+				-0.4
1,890,005	+				-0.7
1,890,005	+				-0.2
1,890,005	+				-0.7
1,890,006	-				-0.0
1,890,006	-				+0.6
1,890,006	-				-0.4
1,890,006	-				-2.0
1,890,008	+				-0.1
1,890,008	+				-0.1
1,890,008	+				-0.1
1,890,008	+				-0.0
1,890,008	+				+0.8
1,890,009	-				+0.9
1,890,009	-				-1.1
1,890,009	-				-0.5
1,890,009	-				-0.5
1,890,009	-				+2.9
1,890,009	-				-0.1
1,890,009	-				-1.7
1,890,091	-				+0.2
1,890,146	+		DZA65_RS08970	0.10	+0.3
1,890,171	-		DZA65_RS08970	0.13	-0.8
1,890,171	-		DZA65_RS08970	0.13	+0.8
1,890,171	-		DZA65_RS08970	0.13	+0.9
1,890,174	+		DZA65_RS08970	0.13	-0.1
1,890,174	+		DZA65_RS08970	0.13	+1.1
1,890,175	-		DZA65_RS08970	0.13	+0.3
1,890,175	-		DZA65_RS08970	0.13	+0.0
1,890,201	+		DZA65_RS08970	0.15	+0.8
1,890,201	+		DZA65_RS08970	0.15	-1.1
1,890,201	+		DZA65_RS08970	0.15	+1.6
1,890,202	-				+1.3
1,890,231	-		DZA65_RS08970	0.18	+0.2
1,890,269	+		DZA65_RS08970	0.21	+0.7
1,890,269	+		DZA65_RS08970	0.21	-0.3
1,890,269	+		DZA65_RS08970	0.21	-0.1
1,890,271	+		DZA65_RS08970	0.21	+0.9
1,890,271	+		DZA65_RS08970	0.21	+0.4
1,890,271	+		DZA65_RS08970	0.21	-0.7
1,890,271	+		DZA65_RS08970	0.21	+1.0
1,890,271	+		DZA65_RS08970	0.21	+0.4
1,890,272	-		DZA65_RS08970	0.21	+0.0
1,890,272	-		DZA65_RS08970	0.21	-0.5
1,890,340	+		DZA65_RS08970	0.27	+0.0
1,890,340	+		DZA65_RS08970	0.27	-1.3
1,890,340	+		DZA65_RS08970	0.27	+0.6
1,890,340	+		DZA65_RS08970	0.27	-2.3
1,890,340	+		DZA65_RS08970	0.27	+0.6
1,890,340	+		DZA65_RS08970	0.27	+0.8
1,890,340	+		DZA65_RS08970	0.27	-0.9
1,890,341	-		DZA65_RS08970	0.27	-1.0
1,890,341	-		DZA65_RS08970	0.27	+1.3
1,890,341	-		DZA65_RS08970	0.27	+0.4
1,890,465	+		DZA65_RS08970	0.38	+1.0
1,890,466	-		DZA65_RS08970	0.38	+0.2
1,890,466	-		DZA65_RS08970	0.38	+0.2
1,890,481	+		DZA65_RS08970	0.39	+1.1
1,890,482	-		DZA65_RS08970	0.39	-2.3
1,890,682	+		DZA65_RS08970	0.57	+1.6
1,890,682	+		DZA65_RS08970	0.57	+0.7
1,890,682	+		DZA65_RS08970	0.57	+0.1
1,890,682	+		DZA65_RS08970	0.57	+0.2
1,890,682	+		DZA65_RS08970	0.57	-1.5
1,890,682	+		DZA65_RS08970	0.57	+0.3
1,890,683	-		DZA65_RS08970	0.57	-2.5
1,890,683	-		DZA65_RS08970	0.57	-1.0
1,890,785	+		DZA65_RS08970	0.66	-1.5
1,890,785	+		DZA65_RS08970	0.66	+0.1
1,890,785	+		DZA65_RS08970	0.66	+0.9
1,890,786	-		DZA65_RS08970	0.66	+0.1
1,890,786	-		DZA65_RS08970	0.66	-0.1
1,890,815	+		DZA65_RS08970	0.68	+1.3
1,890,816	-		DZA65_RS08970	0.68	+0.5
1,890,816	-		DZA65_RS08970	0.68	-0.4
1,890,816	-		DZA65_RS08970	0.68	-1.8
1,891,111	+				-1.6
1,891,112	-				+0.6
1,891,112	-				-1.3
1,891,112	-				-0.4
1,891,112	-				-0.7
1,891,166	+				+2.5
1,891,166	+				+1.9
1,891,166	+				+0.7
1,891,166	+				+1.1
1,891,166	+				+1.2
1,891,166	+				-0.6
1,891,166	+				-1.8
1,891,166	+				-0.2
1,891,166	+				-0.7
1,891,167	-				+0.4
1,891,167	-				-0.1
1,891,167	-				-0.2
1,891,167	-				-0.0
1,891,167	-				-1.3
1,891,208	+				-1.3
1,891,208	+				-0.1
1,891,208	+				-0.3
1,891,209	-				+1.1
1,891,209	-				-1.2
1,891,251	+		DZA65_RS08975	0.11	+0.1
1,891,251	+		DZA65_RS08975	0.11	-0.7
1,891,251	+		DZA65_RS08975	0.11	+0.8
1,891,408	+		DZA65_RS08975	0.31	-0.3
1,891,409	-		DZA65_RS08975	0.31	-0.1
1,891,458	+		DZA65_RS08975	0.37	+0.2
1,891,458	+		DZA65_RS08975	0.37	+0.6
1,891,458	+		DZA65_RS08975	0.37	-0.4
1,891,676	+				-1.7
1,891,676	+		DZA65_RS08975	0.65	+0.1
1,891,676	+		DZA65_RS08975	0.65	-0.8
1,891,677	-		DZA65_RS08975	0.65	+0.5
1,891,679	+		DZA65_RS08975	0.65	+0.1
1,891,680	-		DZA65_RS08975	0.66	-0.0
1,891,761	+		DZA65_RS08975	0.76	-0.7
1,891,761	+		DZA65_RS08975	0.76	+0.8
1,891,761	+		DZA65_RS08975	0.76	-1.3
1,891,761	+		DZA65_RS08975	0.76	-0.3
1,891,762	-		DZA65_RS08975	0.76	-1.3
1,891,762	-		DZA65_RS08975	0.76	+0.2
1,891,762	-		DZA65_RS08975	0.76	+0.8
1,891,762	-				+0.3
1,891,881	+				+1.5
1,891,882	-				-0.5
1,891,902	+				-0.7
1,891,914	+				+0.7
1,891,914	+				+1.8
1,891,914	+				+0.9
1,891,914	+				+1.5
1,891,914	+				-0.3
1,891,914	+				-0.3
1,891,915	-				-0.6
1,891,915	-				+1.0
1,891,915	-				-0.7
1,891,915	-				-1.1
1,891,915	-				-0.7
1,891,915	-				-0.4
1,891,915	-				+0.3
1,891,982	+				+0.5
1,891,982	+				+0.9
1,891,983	-				-2.8
1,891,983	-				-0.0
1,891,983	-				-0.4
1,892,051	-		DZA65_RS08980	0.16	-0.0
1,892,053	-		DZA65_RS08980	0.16	+1.9