Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08555

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,804,301	+		DZA65_RS08545	0.64	+0.9
1,804,301	+		DZA65_RS08545	0.64	-0.5
1,804,302	-		DZA65_RS08545	0.64	-2.3
1,804,302	-		DZA65_RS08545	0.64	+0.1
1,804,302	-		DZA65_RS08545	0.64	+0.6
1,804,302	-		DZA65_RS08545	0.64	+0.3
1,804,302	-		DZA65_RS08545	0.64	-0.7
1,804,302	-		DZA65_RS08545	0.64	+2.1
1,804,351	+		DZA65_RS08545	0.67	+0.9
1,804,402	+		DZA65_RS08545	0.71	+0.0
1,804,403	-		DZA65_RS08545	0.71	-0.1
1,804,403	-		DZA65_RS08545	0.71	-0.2
1,804,403	-		DZA65_RS08545	0.71	-0.6
1,804,459	+		DZA65_RS08545	0.74	-0.0
1,804,460	-		DZA65_RS08545	0.74	-0.8
1,804,460	-		DZA65_RS08545	0.74	-1.1
1,804,460	-		DZA65_RS08545	0.74	+1.0
1,804,464	+		DZA65_RS08545	0.75	-1.3
1,804,464	+		DZA65_RS08545	0.75	-0.7
1,804,464	+		DZA65_RS08545	0.75	+1.1
1,804,486	+		DZA65_RS08545	0.76	+0.2
1,804,486	+		DZA65_RS08545	0.76	-0.2
1,804,487	-		DZA65_RS08545	0.76	+1.0
1,804,505	+		DZA65_RS08545	0.77	+1.0
1,804,505	+		DZA65_RS08545	0.77	+0.5
1,804,505	+		DZA65_RS08545	0.77	+0.7
1,804,505	+		DZA65_RS08545	0.77	+1.2
1,804,506	-		DZA65_RS08545	0.78	-0.2
1,804,529	+		DZA65_RS08545	0.79	-1.1
1,804,529	+		DZA65_RS08545	0.79	+1.1
1,804,529	+		DZA65_RS08545	0.79	-1.3
1,804,529	+		DZA65_RS08545	0.79	-3.1
1,804,529	+		DZA65_RS08545	0.79	+0.3
1,804,529	+		DZA65_RS08545	0.79	+0.8
1,804,530	-		DZA65_RS08545	0.79	-0.1
1,804,530	-		DZA65_RS08545	0.79	-0.3
1,804,530	-		DZA65_RS08545	0.79	+0.5
1,804,530	-		DZA65_RS08545	0.79	+0.3
1,804,559	+		DZA65_RS08545	0.81	+0.6
1,804,559	+		DZA65_RS08545	0.81	+0.6
1,804,559	+		DZA65_RS08545	0.81	+0.7
1,804,559	+		DZA65_RS08545	0.81	+0.4
1,804,560	-		DZA65_RS08545	0.81	+1.9
1,804,560	-		DZA65_RS08545	0.81	-0.3
1,804,630	+		DZA65_RS08545	0.86	+0.5
1,804,630	+		DZA65_RS08545	0.86	+0.7
1,804,631	-		DZA65_RS08545	0.86	+0.1
1,804,631	-		DZA65_RS08545	0.86	-1.9
1,804,631	-		DZA65_RS08545	0.86	-0.0
1,804,631	-		DZA65_RS08545	0.86	+0.3
1,804,646	+		DZA65_RS08545	0.87	+2.8
1,804,646	+		DZA65_RS08545	0.87	-1.3
1,804,647	-				-1.3
1,804,680	+		DZA65_RS08545	0.89	+0.3
1,804,680	+		DZA65_RS08545	0.89	-0.1
1,804,680	+		DZA65_RS08545	0.89	+1.6
1,804,681	-		DZA65_RS08545	0.89	+0.8
1,804,681	-		DZA65_RS08545	0.89	+0.6
1,804,681	-		DZA65_RS08545	0.89	+0.2
1,804,681	-		DZA65_RS08545	0.89	+0.3
1,804,748	+				-0.3
1,804,784	+				+1.7
1,804,784	+				+1.0
1,804,784	+				+0.3
1,804,784	+				-0.3
1,804,784	+				-0.7
1,804,784	+				+0.8
1,804,784	+				-0.5
1,804,784	+				+0.9
1,804,785	-				-1.2
1,804,785	-				-0.2
1,804,785	-				-2.0
1,804,785	-				-0.3
1,804,835	+				-0.4
1,804,980	+		DZA65_RS08550	0.31	+0.5
1,804,981	-		DZA65_RS08550	0.32	+1.5
1,804,987	+		DZA65_RS08550	0.33	-2.5
1,805,038	+		DZA65_RS08550	0.45	+0.1
1,805,038	+				-0.3
1,805,039	-		DZA65_RS08550	0.45	-0.1
1,805,039	-		DZA65_RS08550	0.45	-0.3
1,805,048	-		DZA65_RS08550	0.47	-0.7
1,805,101	+		DZA65_RS08550	0.59	-1.5
1,805,101	+		DZA65_RS08550	0.59	-1.7
1,805,101	+		DZA65_RS08550	0.59	-0.6
1,805,101	+		DZA65_RS08550	0.59	-2.3
1,805,101	+		DZA65_RS08550	0.59	+1.5
1,805,101	+		DZA65_RS08550	0.59	-0.3
1,805,101	+		DZA65_RS08550	0.59	+1.0
1,805,101	+		DZA65_RS08550	0.59	-0.1
1,805,101	+		DZA65_RS08550	0.59	-1.0
1,805,101	+		DZA65_RS08550	0.59	+0.8
1,805,101	+		DZA65_RS08550	0.59	-0.2
1,805,102	-		DZA65_RS08550	0.60	-0.8
1,805,102	-		DZA65_RS08550	0.60	-0.7
1,805,102	-		DZA65_RS08550	0.60	+0.3
1,805,102	-		DZA65_RS08550	0.60	-0.5
1,805,102	-		DZA65_RS08550	0.60	+0.5
1,805,102	-		DZA65_RS08550	0.60	-0.7
1,805,102	-		DZA65_RS08550	0.60	+0.1
1,805,102	-		DZA65_RS08550	0.60	-0.7
1,805,102	-		DZA65_RS08550	0.60	-1.0
1,805,102	-		DZA65_RS08550	0.60	+0.8
1,805,102	-		DZA65_RS08550	0.60	+1.9
1,805,102	-		DZA65_RS08550	0.60	+0.5
1,805,153	+		DZA65_RS08550	0.72	+0.3
1,805,237	-				+0.3
1,805,237	-				-0.0
1,805,242	+				+0.1
1,805,243	-				-1.7
1,805,261	+				+0.0
1,805,277	+				-1.3
1,805,277	+				+1.0
1,805,277	+				+1.8
1,805,277	+				-1.4
1,805,277	+				+0.8
1,805,277	+				-0.9
1,805,277	+				-0.7
1,805,278	-				-0.2
1,805,278	-				-1.2
1,805,278	-				-0.8
1,805,278	-				-1.7
1,805,278	-				-1.1
1,805,278	-				+0.3
1,805,278	-				-1.3
1,805,278	-				-2.3
1,805,314	+				+0.4
1,805,314	+				-1.0
1,805,314	+				-0.5
1,805,314	+				-1.0
1,805,315	-				+0.0
1,805,315	-				+3.1
1,805,493	+		DZA65_RS08555	0.12	+0.4
1,805,494	-		DZA65_RS08555	0.12	+0.8
1,805,509	+		DZA65_RS08555	0.13	-1.0
1,805,509	+		DZA65_RS08555	0.13	+1.7
1,805,509	+		DZA65_RS08555	0.13	+1.5
1,805,509	+		DZA65_RS08555	0.13	-1.5
1,805,510	-		DZA65_RS08555	0.13	-0.4
1,805,510	-		DZA65_RS08555	0.13	+0.3
1,805,510	-		DZA65_RS08555	0.13	+0.7
1,805,665	+		DZA65_RS08555	0.22	+1.3
1,805,665	+		DZA65_RS08555	0.22	-0.9
1,805,666	-		DZA65_RS08555	0.22	+0.1
1,805,806	+		DZA65_RS08555	0.30	-0.4
1,805,806	+		DZA65_RS08555	0.30	-1.7
1,805,807	-		DZA65_RS08555	0.30	+2.6
1,805,807	-		DZA65_RS08555	0.30	-1.1
1,805,807	-		DZA65_RS08555	0.30	-0.2
1,805,808	+		DZA65_RS08555	0.30	-1.7
1,805,809	-		DZA65_RS08555	0.30	+0.9
1,805,816	-		DZA65_RS08555	0.30	+0.1
1,805,824	+		DZA65_RS08555	0.31	+0.6
1,805,874	+		DZA65_RS08555	0.34	+0.6
1,805,959	+		DZA65_RS08555	0.39	-0.1
1,805,959	+		DZA65_RS08555	0.39	+0.3
1,805,960	-		DZA65_RS08555	0.39	+0.7
1,805,986	+		DZA65_RS08555	0.40	-0.6
1,805,986	+		DZA65_RS08555	0.40	+0.5
1,805,986	+		DZA65_RS08555	0.40	-0.0
1,805,986	+		DZA65_RS08555	0.40	-0.4
1,805,986	+		DZA65_RS08555	0.40	+0.5
1,805,986	+		DZA65_RS08555	0.40	-0.8
1,805,986	+		DZA65_RS08555	0.40	+0.6
1,805,987	-		DZA65_RS08555	0.40	+1.1
1,805,987	-		DZA65_RS08555	0.40	+0.8
1,805,987	-		DZA65_RS08555	0.40	-0.0
1,806,042	+		DZA65_RS08555	0.43	+0.3
1,806,138	+		DZA65_RS08555	0.49	+1.0
1,806,138	+		DZA65_RS08555	0.49	+0.8
1,806,138	+		DZA65_RS08555	0.49	-0.2
1,806,138	+		DZA65_RS08555	0.49	-0.7
1,806,139	-		DZA65_RS08555	0.49	-0.7
1,806,139	-		DZA65_RS08555	0.49	+0.3
1,806,139	-		DZA65_RS08555	0.49	-0.2
1,806,325	+		DZA65_RS08555	0.59	-1.1
1,806,325	+		DZA65_RS08555	0.59	-0.0
1,806,385	+		DZA65_RS08555	0.63	+0.4
1,806,385	+		DZA65_RS08555	0.63	-0.8
1,806,385	+		DZA65_RS08555	0.63	+1.0
1,806,385	+		DZA65_RS08555	0.63	+1.1
1,806,385	+		DZA65_RS08555	0.63	+0.3
1,806,385	+		DZA65_RS08555	0.63	-0.1
1,806,385	+		DZA65_RS08555	0.63	+1.7
1,806,386	-		DZA65_RS08555	0.63	-0.1
1,806,386	-		DZA65_RS08555	0.63	-1.1
1,806,386	-		DZA65_RS08555	0.63	+1.7
1,806,389	-		DZA65_RS08555	0.63	-1.3
1,806,679	+		DZA65_RS08555	0.79	-0.3
1,806,679	+		DZA65_RS08555	0.79	-0.2
1,806,679	+		DZA65_RS08555	0.79	+0.2
1,806,679	+		DZA65_RS08555	0.79	+0.3
1,806,679	+				+0.9
1,806,679	+		DZA65_RS08555	0.79	-1.7
1,806,679	+		DZA65_RS08555	0.79	+0.2
1,806,679	+		DZA65_RS08555	0.79	+0.0
1,806,679	+		DZA65_RS08555	0.79	+1.2
1,806,679	+		DZA65_RS08555	0.79	+0.6
1,806,679	+		DZA65_RS08555	0.79	-0.2
1,806,679	+		DZA65_RS08555	0.79	-0.1
1,806,679	+		DZA65_RS08555	0.79	-0.7
1,806,679	+		DZA65_RS08555	0.79	+0.1
1,806,679	+		DZA65_RS08555	0.79	-0.7
1,806,679	+		DZA65_RS08555	0.79	-0.0
1,806,679	+		DZA65_RS08555	0.79	-0.0
1,806,679	+		DZA65_RS08555	0.79	+0.1
1,806,679	+		DZA65_RS08555	0.79	-0.3
1,806,679	+		DZA65_RS08555	0.79	-0.2
1,806,679	+		DZA65_RS08555	0.79	+0.8
1,806,679	+		DZA65_RS08555	0.79	-0.3
1,806,679	+		DZA65_RS08555	0.79	+0.6
1,806,679	+		DZA65_RS08555	0.79	+1.5
1,806,680	-		DZA65_RS08555	0.79	+0.1
1,806,680	-		DZA65_RS08555	0.79	+1.0
1,806,680	-		DZA65_RS08555	0.79	-0.3
1,806,680	-		DZA65_RS08555	0.79	+0.1
1,806,680	-		DZA65_RS08555	0.79	+0.6
1,806,680	-		DZA65_RS08555	0.79	+1.0
1,806,680	-		DZA65_RS08555	0.79	+0.8
1,806,680	-		DZA65_RS08555	0.79	-0.0
1,806,680	-		DZA65_RS08555	0.79	+0.7
1,806,680	-		DZA65_RS08555	0.79	+0.3
1,806,680	-		DZA65_RS08555	0.79	+1.5
1,806,680	-		DZA65_RS08555	0.79	+1.2
1,806,680	-		DZA65_RS08555	0.79	-0.1
1,806,680	-		DZA65_RS08555	0.79	-0.1
1,806,723	+		DZA65_RS08555	0.82	-0.4
1,806,723	+		DZA65_RS08555	0.82	+0.3
1,806,724	-		DZA65_RS08555	0.82	+0.5
1,806,727	+		DZA65_RS08555	0.82	+0.4
1,806,727	+		DZA65_RS08555	0.82	+1.3
1,806,727	+		DZA65_RS08555	0.82	-0.7
1,806,727	+		DZA65_RS08555	0.82	-1.4
1,806,727	+		DZA65_RS08555	0.82	+0.5
1,806,728	-		DZA65_RS08555	0.82	+1.2
1,806,728	-		DZA65_RS08555	0.82	+0.1
1,806,728	-		DZA65_RS08555	0.82	+0.6
1,806,904	+				+0.6
1,806,904	+				+0.5
1,806,904	+				+0.6
1,806,904	+				-0.3
1,806,904	+				-0.5
1,806,905	-				-2.3
1,806,905	-				-0.1
1,806,905	-				+0.5
1,806,943	+				+0.7
1,806,943	+				-1.7
1,806,944	-				-2.0
1,806,944	-				+1.9
1,806,944	-				-0.6
1,807,022	+				-1.2
1,807,023	-				+2.6
1,807,023	-				-1.3
1,807,023	-				-1.1
1,807,023	-				-0.0
1,807,023	-				-1.7
1,807,023	-				-0.3
1,807,085	+				-1.9
1,807,085	+				-1.1
1,807,086	-				+0.1
1,807,108	+				-0.0
1,807,109	-				+2.0
1,807,311	+		DZA65_RS08560	0.30	-0.5
1,807,312	-		DZA65_RS08560	0.30	+0.3
1,807,422	+		DZA65_RS08560	0.41	+1.5
1,807,422	+		DZA65_RS08560	0.41	-0.5
1,807,422	+		DZA65_RS08560	0.41	-2.0
1,807,423	-		DZA65_RS08560	0.41	+0.1
1,807,551	+		DZA65_RS08560	0.54	-0.1
1,807,551	+		DZA65_RS08560	0.54	+0.1
1,807,551	+		DZA65_RS08560	0.54	-1.0
1,807,552	-		DZA65_RS08560	0.54	+0.3
1,807,552	-		DZA65_RS08560	0.54	-2.9
1,807,806	-		DZA65_RS08560	0.79	-1.7
1,807,806	-		DZA65_RS08560	0.79	-1.2
1,807,806	-		DZA65_RS08560	0.79	+0.8
1,807,806	-		DZA65_RS08560	0.79	+0.1
1,807,995	+				-0.3
1,807,995	+				-0.7
1,807,995	+				-0.4
1,807,996	-				-0.4
1,807,996	-				+0.4
1,808,019	+				+0.3
1,808,020	-				+0.3
1,808,020	-				+0.7