Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08400

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,770,867	+				-0.4
1,770,867	+				+0.1
1,770,868	-				-0.3
1,770,935	-				-0.0
1,770,976	+				-0.4
1,770,977	-				-0.1
1,770,977	-				-2.5
1,770,977	-				+0.3
1,770,977	-				+1.2
1,770,977	-				-2.0
1,770,977	-				-1.3
1,771,152	+		DZA65_RS08395	0.26	+0.4
1,771,152	+		DZA65_RS08395	0.26	+0.3
1,771,157	+		DZA65_RS08395	0.27	-1.5
1,771,157	+		DZA65_RS08395	0.27	-0.5
1,771,157	+		DZA65_RS08395	0.27	-1.1
1,771,157	+		DZA65_RS08395	0.27	-1.1
1,771,158	-		DZA65_RS08395	0.27	-0.4
1,771,158	-		DZA65_RS08395	0.27	-0.5
1,771,158	-		DZA65_RS08395	0.27	-0.7
1,771,209	-		DZA65_RS08395	0.33	+0.1
1,771,330	+		DZA65_RS08395	0.46	-0.6
1,771,331	-		DZA65_RS08395	0.46	+0.3
1,771,362	+		DZA65_RS08395	0.49	-0.3
1,771,362	+		DZA65_RS08395	0.49	+0.5
1,771,363	-		DZA65_RS08395	0.49	+0.7
1,771,366	+		DZA65_RS08395	0.50	+0.3
1,771,366	+		DZA65_RS08395	0.50	+1.3
1,771,366	+		DZA65_RS08395	0.50	+0.9
1,771,367	-		DZA65_RS08395	0.50	-0.9
1,771,367	-		DZA65_RS08395	0.50	-0.2
1,771,367	-		DZA65_RS08395	0.50	+0.1
1,771,414	+		DZA65_RS08395	0.55	-0.1
1,771,445	+		DZA65_RS08395	0.58	-0.7
1,771,445	+		DZA65_RS08395	0.58	+0.6
1,771,449	-		DZA65_RS08395	0.59	-2.9
1,771,449	-		DZA65_RS08395	0.59	-1.0
1,771,496	+		DZA65_RS08395	0.64	-0.3
1,771,496	+		DZA65_RS08395	0.64	+1.2
1,771,496	+		DZA65_RS08395	0.64	-0.6
1,771,496	+		DZA65_RS08395	0.64	-0.1
1,771,496	+		DZA65_RS08395	0.64	+0.4
1,771,497	-		DZA65_RS08395	0.64	+1.7
1,771,497	-		DZA65_RS08395	0.64	+0.3
1,771,497	-		DZA65_RS08395	0.64	-0.4
1,771,497	-		DZA65_RS08395	0.64	+0.3
1,771,497	-		DZA65_RS08395	0.64	-1.7
1,771,497	-		DZA65_RS08395	0.64	-0.5
1,771,497	-		DZA65_RS08395	0.64	-0.7
1,771,497	-		DZA65_RS08395	0.64	-2.5
1,771,600	+		DZA65_RS08395	0.75	-0.1
1,771,600	+				+0.3
1,771,607	+		DZA65_RS08395	0.76	-1.7
1,771,703	+		DZA65_RS08395	0.86	+1.3
1,771,703	+		DZA65_RS08395	0.86	+1.1
1,771,704	-		DZA65_RS08395	0.86	+1.6
1,771,811	-				-1.3
1,771,811	-				+1.4
1,771,906	-				-0.2
1,771,996	+				-1.1
1,771,996	+				+1.0
1,771,996	+				-0.8
1,771,997	-				+0.1
1,772,030	-		DZA65_RS08400	0.11	+0.5
1,772,144	-		DZA65_RS08400	0.17	-1.4
1,772,152	-		DZA65_RS08400	0.18	-0.7
1,772,250	+		DZA65_RS08400	0.23	-1.8
1,772,286	-		DZA65_RS08400	0.25	+1.9
1,772,509	+		DZA65_RS08400	0.38	-0.7
1,772,509	+		DZA65_RS08400	0.38	-0.7
1,772,509	+		DZA65_RS08400	0.38	-1.3
1,772,510	-		DZA65_RS08400	0.38	+1.6
1,772,519	+		DZA65_RS08400	0.38	-0.3
1,772,519	+		DZA65_RS08400	0.38	+1.0
1,772,519	+		DZA65_RS08400	0.38	+0.2
1,772,519	+		DZA65_RS08400	0.38	-0.2
1,772,519	+		DZA65_RS08400	0.38	-1.9
1,772,519	+		DZA65_RS08400	0.38	-0.3
1,772,519	+		DZA65_RS08400	0.38	-2.0
1,772,519	+		DZA65_RS08400	0.38	-1.3
1,772,520	-		DZA65_RS08400	0.38	-2.5
1,772,520	-		DZA65_RS08400	0.38	-0.9
1,772,520	-		DZA65_RS08400	0.38	+0.8
1,772,520	-		DZA65_RS08400	0.38	+1.2
1,772,520	-				-0.7
1,772,794	-		DZA65_RS08400	0.54	-0.7
1,772,794	-		DZA65_RS08400	0.54	+0.0
1,773,014	+		DZA65_RS08400	0.66	-2.7
1,773,199	-		DZA65_RS08400	0.76	-0.8
1,773,199	-		DZA65_RS08400	0.76	-1.5
1,773,199	-		DZA65_RS08400	0.76	+0.8
1,773,199	-		DZA65_RS08400	0.76	+0.7
1,773,332	+		DZA65_RS08400	0.84	-0.1
1,773,332	+		DZA65_RS08400	0.84	+2.3
1,773,340	+		DZA65_RS08400	0.84	+0.7
1,773,340	+		DZA65_RS08400	0.84	-0.3
1,773,340	+		DZA65_RS08400	0.84	-0.3
1,773,340	+		DZA65_RS08400	0.84	-0.8
1,773,340	+		DZA65_RS08400	0.84	-0.4
1,773,340	+		DZA65_RS08400	0.84	-0.8
1,773,361	-		DZA65_RS08400	0.85	-0.2
1,773,371	-		DZA65_RS08400	0.86	+0.9
1,773,395	+		DZA65_RS08400	0.87	-0.3
1,773,395	+		DZA65_RS08400	0.87	-1.7
1,773,395	+		DZA65_RS08400	0.87	-1.7
1,773,395	+		DZA65_RS08400	0.87	-0.7
1,773,395	+		DZA65_RS08400	0.87	+1.6
1,773,395	+		DZA65_RS08400	0.87	-2.2
1,773,395	+		DZA65_RS08400	0.87	+0.1
1,773,395	+		DZA65_RS08400	0.87	+0.8
1,773,395	+		DZA65_RS08400	0.87	+0.4
1,773,395	+		DZA65_RS08400	0.87	-0.5
1,773,396	-		DZA65_RS08400	0.87	-2.0
1,773,396	-		DZA65_RS08400	0.87	-0.3
1,773,396	-		DZA65_RS08400	0.87	-0.6
1,773,396	-		DZA65_RS08400	0.87	-1.9
1,773,396	-		DZA65_RS08400	0.87	-0.7
1,773,396	-		DZA65_RS08400	0.87	-0.7
1,773,396	-		DZA65_RS08400	0.87	+1.2
1,773,396	-		DZA65_RS08400	0.87	-0.4
1,773,396	-		DZA65_RS08400	0.87	-0.0
1,773,435	+		DZA65_RS08400	0.89	+1.0
1,773,458	+				+0.1
1,773,459	-				-1.0
1,773,563	+				+1.9
1,773,563	+				+2.0
1,773,564	-				-1.5
1,773,650	-				+0.9
1,773,704	-		DZA65_RS08405	0.13	+1.0
1,773,704	-		DZA65_RS08405	0.13	-0.0
1,773,747	+		DZA65_RS08405	0.19	-1.7
1,773,774	+		DZA65_RS08405	0.23	+0.6
1,773,803	+		DZA65_RS08405	0.28	-0.5
1,773,813	-		DZA65_RS08405	0.29	+1.5
1,773,869	+		DZA65_RS08405	0.38	+1.0
1,773,869	+		DZA65_RS08405	0.38	+1.6
1,773,869	+		DZA65_RS08405	0.38	-1.7
1,773,869	+		DZA65_RS08405	0.38	-0.9
1,773,869	+		DZA65_RS08405	0.38	-0.0
1,773,869	+		DZA65_RS08405	0.38	-0.3
1,773,869	+				+0.3
1,773,870	-		DZA65_RS08405	0.38	-1.3
1,773,870	-		DZA65_RS08405	0.38	+1.8
1,773,870	-		DZA65_RS08405	0.38	+0.2
1,773,870	-		DZA65_RS08405	0.38	+0.0
1,773,870	-		DZA65_RS08405	0.38	-0.9
1,773,911	+		DZA65_RS08405	0.44	-1.1
1,773,939	-		DZA65_RS08405	0.48	-1.5
1,773,939	-		DZA65_RS08405	0.48	+0.6
1,773,963	-		DZA65_RS08405	0.51	-0.2
1,773,963	-		DZA65_RS08405	0.51	-0.3
1,773,964	+		DZA65_RS08405	0.52	-1.6
1,773,964	+		DZA65_RS08405	0.52	+0.0
1,773,964	+		DZA65_RS08405	0.52	-0.9
1,773,964	+		DZA65_RS08405	0.52	-0.7
1,773,965	-		DZA65_RS08405	0.52	+0.2
1,773,965	-		DZA65_RS08405	0.52	-2.0
1,773,965	-		DZA65_RS08405	0.52	-0.3
1,773,977	-		DZA65_RS08405	0.54	+2.9
1,774,005	+		DZA65_RS08405	0.58	-2.9
1,774,062	-		DZA65_RS08405	0.66	+1.1
1,774,065	-		DZA65_RS08405	0.67	-0.4
1,774,139	+		DZA65_RS08405	0.78	-1.1
1,774,175	+		DZA65_RS08405	0.83	-0.8
1,774,293	+				-0.4
1,774,294	-				-0.4
1,774,299	-				-1.9
1,774,341	+				-1.6
1,774,342	-				-1.5
1,774,342	-				-0.3
1,774,342	-				-0.4
1,774,346	-				-1.8
1,774,347	+				-0.3
1,774,354	+				-0.9
1,774,354	+				-0.3
1,774,355	-				-0.6
1,774,355	-				-1.3
1,774,355	-				+0.2
1,774,357	+				+0.1
1,774,380	+				+0.7
1,774,380	+				+1.2
1,774,380	+				+1.9
1,774,422	-				+0.3
1,774,422	-				-0.1
1,774,461	+				-0.9
1,774,520	-				-2.6
1,774,542	+				+1.4
1,774,555	+				-1.1
1,774,556	-				+0.3
1,774,582	-				+0.5
1,774,608	+				-1.5
1,774,619	+				+0.3