Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08205

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,716,992	+		DZA65_RS08200	0.38	+0.7
1,717,020	+		DZA65_RS08200	0.40	+1.6
1,717,073	+		DZA65_RS08200	0.44	+0.7
1,717,074	-		DZA65_RS08200	0.44	-0.1
1,717,216	+		DZA65_RS08200	0.56	+0.1
1,717,216	+		DZA65_RS08200	0.56	-1.0
1,717,216	+		DZA65_RS08200	0.56	-0.1
1,717,216	+		DZA65_RS08200	0.56	-0.1
1,717,216	+		DZA65_RS08200	0.56	+0.0
1,717,217	-				+1.3
1,717,217	-		DZA65_RS08200	0.56	+0.6
1,717,240	+		DZA65_RS08200	0.57	-0.7
1,717,240	+		DZA65_RS08200	0.57	+0.3
1,717,240	+		DZA65_RS08200	0.57	-0.5
1,717,240	+		DZA65_RS08200	0.57	-0.1
1,717,241	-		DZA65_RS08200	0.57	-0.7
1,717,241	-		DZA65_RS08200	0.57	-0.5
1,717,241	-		DZA65_RS08200	0.57	+0.5
1,717,241	-		DZA65_RS08200	0.57	+0.1
1,717,241	-		DZA65_RS08200	0.57	+0.5
1,717,241	-		DZA65_RS08200	0.57	-0.7
1,717,241	-		DZA65_RS08200	0.57	+0.3
1,717,276	-		DZA65_RS08200	0.60	-1.5
1,717,276	-		DZA65_RS08200	0.60	-0.3
1,717,390	-		DZA65_RS08200	0.69	+0.3
1,717,428	+		DZA65_RS08200	0.72	-0.0
1,717,428	+		DZA65_RS08200	0.72	-2.3
1,717,429	-		DZA65_RS08200	0.72	+0.5
1,717,540	+		DZA65_RS08200	0.81	-0.5
1,717,540	+		DZA65_RS08200	0.81	-0.4
1,717,540	+		DZA65_RS08200	0.81	-0.7
1,717,541	-		DZA65_RS08200	0.81	-0.2
1,717,541	-		DZA65_RS08200	0.81	-0.7
1,717,541	-		DZA65_RS08200	0.81	-0.9
1,717,582	+		DZA65_RS08200	0.84	+0.1
1,717,582	+		DZA65_RS08200	0.84	+1.9
1,717,582	+		DZA65_RS08200	0.84	-0.7
1,717,582	+		DZA65_RS08200	0.84	-1.3
1,717,582	+		DZA65_RS08200	0.84	+0.3
1,717,582	+		DZA65_RS08200	0.84	+0.3
1,717,583	-		DZA65_RS08200	0.84	-0.1
1,717,583	-		DZA65_RS08200	0.84	+0.7
1,717,651	+		DZA65_RS08200	0.89	+0.3
1,717,678	+				+0.3
1,717,678	+				-1.8
1,717,678	+				-0.1
1,717,679	-				-0.9
1,717,679	-				+0.3
1,717,679	-				-0.4
1,717,679	-				-1.3
1,717,679	-				+0.6
1,717,679	-				+0.3
1,717,729	-				+0.3
1,717,765	+				-0.1
1,717,766	-				+0.4
1,717,766	-				-2.0
1,717,770	+				+0.3
1,717,770	+				+0.1
1,717,771	-				+0.5
1,717,771	-				+0.1
1,717,773	+				-0.3
1,717,773	+				+0.3
1,717,773	+				+0.0
1,717,773	+				-0.2
1,717,773	+				-1.8
1,717,773	+				-1.7
1,717,773	+				-0.3
1,717,773	+				-1.1
1,717,773	+				+1.9
1,717,773	+				+0.7
1,717,773	+				+0.3
1,717,773	+				+0.1
1,717,773	+				-0.1
1,717,773	+				-2.3
1,717,774	-				-1.1
1,717,774	-				+1.0
1,717,774	-				+0.3
1,717,774	-				-0.4
1,717,774	-				-1.0
1,717,774	-				+0.6
1,717,774	-				+0.5
1,717,774	-				-1.9
1,717,774	-				-0.1
1,717,906	+				+0.7
1,717,907	-				-0.4
1,717,934	+				-0.3
1,717,937	+				-1.0
1,717,937	+				-0.8
1,717,937	+				+1.2
1,717,938	-				-1.3
1,717,938	-				+0.2
1,717,938	-				+1.1
1,717,938	-				-0.4
1,717,938	-				-1.3
1,717,938	-				+0.3
1,717,949	+				-0.1
1,717,950	-				-0.1
1,717,950	-				+0.3
1,717,950	-				+0.7
1,717,978	+				-0.3
1,717,979	-				-0.7
1,717,984	+				-0.9
1,717,994	-				-0.7
1,717,994	-				+0.3
1,718,066	-		DZA65_RS08205	0.18	+0.6
1,718,102	+		DZA65_RS08205	0.23	-1.1
1,718,103	-		DZA65_RS08205	0.23	+0.3
1,718,164	+		DZA65_RS08205	0.30	+1.0
1,718,165	-		DZA65_RS08205	0.30	+0.6
1,718,214	+		DZA65_RS08205	0.36	+0.8
1,718,214	+		DZA65_RS08205	0.36	-0.3
1,718,214	+		DZA65_RS08205	0.36	-0.2
1,718,214	+		DZA65_RS08205	0.36	-0.1
1,718,214	+		DZA65_RS08205	0.36	+0.2
1,718,215	-		DZA65_RS08205	0.37	-0.4
1,718,215	-		DZA65_RS08205	0.37	+0.5
1,718,215	-		DZA65_RS08205	0.37	+1.7
1,718,215	-		DZA65_RS08205	0.37	-0.4
1,718,215	-		DZA65_RS08205	0.37	-2.5
1,718,215	-		DZA65_RS08205	0.37	-0.1
1,718,215	-		DZA65_RS08205	0.37	+0.5
1,718,236	-		DZA65_RS08205	0.39	-1.1
1,718,236	-		DZA65_RS08205	0.39	+0.1
1,718,236	-				-1.7
1,718,236	-		DZA65_RS08205	0.39	+2.1
1,718,245	+				-1.3
1,718,245	+		DZA65_RS08205	0.40	+0.3
1,718,245	+		DZA65_RS08205	0.40	-1.4
1,718,245	+		DZA65_RS08205	0.40	-0.5
1,718,246	-		DZA65_RS08205	0.40	-1.0
1,718,260	+		DZA65_RS08205	0.42	-0.2
1,718,260	+		DZA65_RS08205	0.42	-1.5
1,718,260	+		DZA65_RS08205	0.42	+0.1
1,718,261	-		DZA65_RS08205	0.42	+1.3
1,718,261	-		DZA65_RS08205	0.42	+0.1
1,718,261	-		DZA65_RS08205	0.42	-1.3
1,718,261	-		DZA65_RS08205	0.42	+0.3
1,718,261	-		DZA65_RS08205	0.42	-2.5
1,718,261	-		DZA65_RS08205	0.42	-1.0
1,718,278	+		DZA65_RS08205	0.44	+0.0
1,718,278	+		DZA65_RS08205	0.44	-0.2
1,718,278	+		DZA65_RS08205	0.44	-0.5
1,718,359	+		DZA65_RS08205	0.54	-3.0
1,718,442	-		DZA65_RS08205	0.65	-0.5
1,718,442	-		DZA65_RS08205	0.65	-0.4
1,718,442	-		DZA65_RS08205	0.65	+1.3
1,718,442	-		DZA65_RS08205	0.65	+1.0
1,718,470	+		DZA65_RS08205	0.68	+0.6
1,718,470	+		DZA65_RS08205	0.68	-1.3
1,718,470	+		DZA65_RS08205	0.68	+0.3
1,718,471	-		DZA65_RS08205	0.68	-2.5
1,718,473	+		DZA65_RS08205	0.69	-0.3
1,718,474	-		DZA65_RS08205	0.69	-1.9
1,718,474	-		DZA65_RS08205	0.69	-0.4
1,718,474	-		DZA65_RS08205	0.69	-0.8
1,718,474	-		DZA65_RS08205	0.69	+0.6
1,718,474	-		DZA65_RS08205	0.69	-1.3
1,718,474	-		DZA65_RS08205	0.69	-0.4
1,718,477	+		DZA65_RS08205	0.69	-1.1
1,718,477	+		DZA65_RS08205	0.69	-4.0
1,718,477	+		DZA65_RS08205	0.69	+0.8
1,718,477	+		DZA65_RS08205	0.69	+0.1
1,718,478	-		DZA65_RS08205	0.69	-0.7
1,718,478	-		DZA65_RS08205	0.69	-0.4
1,718,478	-		DZA65_RS08205	0.69	-2.5
1,718,495	+		DZA65_RS08205	0.71	-0.3
1,718,496	-		DZA65_RS08205	0.71	+0.2
1,718,561	+		DZA65_RS08205	0.79	-0.6
1,718,562	-		DZA65_RS08205	0.80	-2.8
1,718,562	-		DZA65_RS08205	0.80	+1.9
1,718,562	-		DZA65_RS08205	0.80	-3.1
1,718,574	-		DZA65_RS08205	0.81	+0.0
1,718,587	+		DZA65_RS08205	0.83	+0.5
1,718,587	+		DZA65_RS08205	0.83	-2.5
1,718,588	-		DZA65_RS08205	0.83	-0.1
1,718,588	-		DZA65_RS08205	0.83	-1.8
1,718,656	+				-2.1
1,718,656	+				-0.3
1,718,656	+				-1.7
1,718,681	+				-0.7
1,718,692	+				+0.0
1,718,692	+				+0.3
1,718,692	+				+1.3
1,718,708	+				-0.0
1,718,708	+				+1.3
1,718,708	+				-2.0
1,718,709	-				+0.3
1,718,709	-				-1.0
1,718,709	-				-0.1
1,718,730	+				+0.9
1,718,748	+				-0.1
1,718,749	-				-0.1
1,718,749	-				-1.1
1,718,749	-				-0.1
1,718,749	-				-0.4
1,718,749	-				+0.6
1,718,749	-				+0.5
1,718,749	-				-0.7
1,718,829	+				-0.3
1,718,829	+				+0.1
1,718,829	+				-0.7
1,718,829	+				-0.5
1,718,829	+				+0.3
1,718,829	+				+0.8
1,718,829	+				+2.4
1,718,829	+				-1.0
1,718,829	+				+0.2
1,718,829	+				+0.0
1,718,829	+				-0.4
1,718,829	+				+0.1
1,718,830	-				+2.2
1,718,830	-				-0.8
1,718,830	-				-0.5
1,718,830	-				-0.1
1,718,830	-				+0.1
1,718,830	-				-0.4
1,718,830	-				+0.0
1,718,830	-				-0.2
1,718,830	-				-0.5
1,718,830	-				+1.5
1,718,830	-				-0.3
1,718,830	-				+1.3
1,718,864	-				-0.7
1,718,901	-				+0.2
1,718,930	-				+0.7
1,718,930	-				-0.7
1,718,930	-				+0.2
1,718,930	-				-1.3
1,718,930	-				+0.7
1,718,962	+				+0.3
1,718,962	+				-1.3
1,718,962	+				+0.1
1,718,962	+				-1.0
1,718,963	-				+0.5
1,718,977	+				-1.1
1,718,977	+				-0.8
1,718,978	-				+0.5
1,718,978	-				+0.3
1,718,978	-				+0.7
1,719,063	-				-0.4
1,719,063	-				-1.1
1,719,063	-				-1.0
1,719,063	-				-2.0
1,719,096	-				+0.2
1,719,219	-				+0.3
1,719,242	+				+0.0
1,719,305	+				-0.2
1,719,305	+				-1.3
1,719,306	-				+0.3
1,719,306	-				+0.3
1,719,319	-				-1.8
1,719,319	-				-0.3
1,719,319	-				+1.5
1,719,320	+				+0.1
1,719,320	+				-2.5
1,719,320	+				-0.5
1,719,320	+				-2.4
1,719,444	+				-1.0
1,719,444	+				-0.4
1,719,444	+				+0.5
1,719,445	-				-0.3
1,719,445	-				-0.5
1,719,446	+				-1.4
1,719,446	+				-0.4
1,719,446	+				-1.0
1,719,447	-				+1.3
1,719,447	-				-1.0
1,719,447	-				-0.3
1,719,489	+				-1.1
1,719,490	-				+0.3
1,719,490	-				-0.2
1,719,490	-				-0.0
1,719,490	-				-2.4
1,719,490	-				-0.3
1,719,491	+				+0.1
1,719,491	+				-0.7
1,719,492	-				-0.8
1,719,492	-				-0.9
1,719,492	-				+0.7
1,719,492	-				+2.1
1,719,492	-				-2.0
1,719,538	+				-0.7
1,719,538	+				-0.4
1,719,538	+				+0.6
1,719,539	-				-2.7
1,719,539	-				+1.6
1,719,539	-				+0.8
1,719,704	+				-0.7
1,719,704	+				-2.0
1,719,705	-				+0.1