Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07835

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
1,632,316	+	DZA65_RS07830	0.43	-0.2
1,632,316	+	DZA65_RS07830	0.43	-0.1
1,632,317	-	DZA65_RS07830	0.43	+0.3
1,632,317	-	DZA65_RS07830	0.43	+0.1
1,632,470	+	DZA65_RS07830	0.52	-1.4
1,632,470	+	DZA65_RS07830	0.52	-0.4
1,632,482	+	DZA65_RS07830	0.52	-0.0
1,632,483	-	DZA65_RS07830	0.52	+0.0
1,632,535	+	DZA65_RS07830	0.55	+0.6
1,632,535	+	DZA65_RS07830	0.55	+0.1
1,632,536	-	DZA65_RS07830	0.55	-0.7
1,632,536	-	DZA65_RS07830	0.55	+0.2
1,632,646	+	DZA65_RS07830	0.62	-0.4
1,632,646	+	DZA65_RS07830	0.62	+0.0
1,632,646	+	DZA65_RS07830	0.62	-0.3
1,632,647	-	DZA65_RS07830	0.62	-0.1
1,632,647	-			+0.3
1,632,647	-	DZA65_RS07830	0.62	-0.2
1,632,671	+	DZA65_RS07830	0.63	-0.3
1,632,671	+	DZA65_RS07830	0.63	+0.3
1,632,672	-	DZA65_RS07830	0.63	-1.2
1,632,784	+	DZA65_RS07830	0.70	+1.1
1,632,784	+	DZA65_RS07830	0.70	-0.7
1,632,784	+	DZA65_RS07830	0.70	-1.7
1,632,784	+	DZA65_RS07830	0.70	+1.3
1,632,785	-	DZA65_RS07830	0.70	+0.3
1,632,922	+	DZA65_RS07830	0.78	-0.3
1,632,922	+	DZA65_RS07830	0.78	+1.4
1,632,922	+	DZA65_RS07830	0.78	-0.5
1,632,923	-	DZA65_RS07830	0.78	+1.1
1,633,060	+	DZA65_RS07830	0.86	-1.1
1,633,060	+	DZA65_RS07830	0.86	-0.4
1,633,060	+	DZA65_RS07830	0.86	+0.3
1,633,060	+			+1.3
1,633,060	+	DZA65_RS07830	0.86	+0.3
1,633,060	+	DZA65_RS07830	0.86	-0.3
1,633,060	+	DZA65_RS07830	0.86	-0.7
1,633,060	+	DZA65_RS07830	0.86	+0.3
1,633,060	+	DZA65_RS07830	0.86	+0.2
1,633,061	-	DZA65_RS07830	0.86	-0.5
1,633,061	-	DZA65_RS07830	0.86	-0.5
1,633,061	-			+0.9
1,633,061	-	DZA65_RS07830	0.86	+0.7
1,633,061	-	DZA65_RS07830	0.86	-0.1
1,633,061	-	DZA65_RS07830	0.86	+0.8
1,633,061	-	DZA65_RS07830	0.86	+0.5
1,633,061	-	DZA65_RS07830	0.86	-1.7
1,633,061	-	DZA65_RS07830	0.86	+0.3
1,633,061	-	DZA65_RS07830	0.86	-1.1
1,633,061	-	DZA65_RS07830	0.86	-0.5
1,633,061	-	DZA65_RS07830	0.86	+2.7
1,633,061	-	DZA65_RS07830	0.86	-1.5
1,633,061	-	DZA65_RS07830	0.86	-0.5
1,633,063	+	DZA65_RS07830	0.86	+0.6
1,633,063	+	DZA65_RS07830	0.86	-0.3
1,633,063	+	DZA65_RS07830	0.86	-0.3
1,633,063	+	DZA65_RS07830	0.86	+0.0
1,633,063	+	DZA65_RS07830	0.86	-1.7
1,633,063	+	DZA65_RS07830	0.86	+0.7
1,633,063	+	DZA65_RS07830	0.86	+0.8
1,633,063	+	DZA65_RS07830	0.86	+0.8
1,633,063	+	DZA65_RS07830	0.86	+0.7
1,633,063	+	DZA65_RS07830	0.86	-0.3
1,633,063	+	DZA65_RS07830	0.86	+1.0
1,633,063	+	DZA65_RS07830	0.86	+1.5
1,633,064	-	DZA65_RS07830	0.86	+0.0
1,633,064	-			+0.3
1,633,064	-	DZA65_RS07830	0.86	-0.4
1,633,064	-	DZA65_RS07830	0.86	-0.5
1,633,064	-	DZA65_RS07830	0.86	-2.5
1,633,064	-	DZA65_RS07830	0.86	+0.2
1,633,064	-	DZA65_RS07830	0.86	+0.2
1,633,064	-	DZA65_RS07830	0.86	+0.0
1,633,064	-			-0.7
1,633,064	-	DZA65_RS07830	0.86	-0.4
1,633,064	-	DZA65_RS07830	0.86	+0.2
1,633,064	-	DZA65_RS07830	0.86	+1.2
1,633,064	-	DZA65_RS07830	0.86	-0.3
1,633,064	-			-1.7
1,633,064	-	DZA65_RS07830	0.86	+0.9
1,633,064	-	DZA65_RS07830	0.86	+1.1
1,633,064	-	DZA65_RS07830	0.86	-0.5
1,633,064	-	DZA65_RS07830	0.86	-0.6
1,633,064	-	DZA65_RS07830	0.86	+3.2
1,633,064	-	DZA65_RS07830	0.86	+1.5
1,633,064	-	DZA65_RS07830	0.86	+0.9
1,633,135	+			+0.7
1,633,139	-			-0.0
1,633,139	-			-0.7
1,633,139	-			-0.5
1,633,139	-			-0.4
1,633,144	+			+1.1
1,633,258	+			-0.4
1,633,258	+			-0.9
1,633,258	+			+0.3
1,633,258	+			-1.2
1,633,258	+			-0.4
1,633,258	+			+0.9
1,633,258	+			-2.1
1,633,258	+			+0.3
1,633,258	+			-1.2
1,633,259	-			-2.8
1,633,301	+			+0.2
1,633,301	+			+0.2
1,633,301	+			-1.1
1,633,302	-			+1.2
1,633,302	-			-0.2
1,633,302	-			+0.9
1,633,302	-			-0.7
1,633,310	+			+1.3
1,633,310	+			-0.8
1,633,310	+			-1.2
1,633,310	+			-2.5
1,633,311	-			-0.5
1,633,311	-			-1.8
1,633,311	-			-0.1
1,633,311	-			-0.4
1,633,311	-			+0.8
1,633,311	-			+0.1
1,633,353	+			-0.3
1,633,354	-			-0.7
1,633,365	+			-0.4
1,633,366	-			+0.5
1,633,366	-			-2.8
1,633,366	-			+0.1
1,633,366	-			-1.1
1,633,541	-	DZA65_RS07835	0.15	-1.0
1,633,541	-	DZA65_RS07835	0.15	-0.1
1,633,694	-	DZA65_RS07835	0.24	-0.6
1,633,697	+	DZA65_RS07835	0.24	+0.8
1,633,698	-	DZA65_RS07835	0.24	-1.1
1,633,761	+	DZA65_RS07835	0.28	-0.4
1,633,761	+	DZA65_RS07835	0.28	+1.6
1,633,762	-	DZA65_RS07835	0.28	-0.1
1,633,856	+	DZA65_RS07835	0.34	+1.8
1,633,857	-	DZA65_RS07835	0.34	+0.9
1,634,003	+	DZA65_RS07835	0.43	+0.1
1,634,136	-	DZA65_RS07835	0.51	-0.7
1,634,163	+	DZA65_RS07835	0.52	+0.1
1,634,163	+	DZA65_RS07835	0.52	-0.7
1,634,164	-	DZA65_RS07835	0.52	-3.0
1,634,164	-	DZA65_RS07835	0.52	-2.1
1,634,164	-	DZA65_RS07835	0.52	-0.5
1,634,164	-	DZA65_RS07835	0.52	+1.5
1,634,164	-	DZA65_RS07835	0.52	+0.4
1,634,164	-	DZA65_RS07835	0.52	+1.2
1,634,278	-	DZA65_RS07835	0.59	-1.0
1,634,278	-	DZA65_RS07835	0.59	-0.1
1,634,278	-	DZA65_RS07835	0.59	+0.4
1,634,408	+	DZA65_RS07835	0.67	+0.3
1,634,447	+	DZA65_RS07835	0.70	+0.0
1,634,447	+	DZA65_RS07835	0.70	-2.2
1,634,447	+	DZA65_RS07835	0.70	+1.8
1,634,447	+	DZA65_RS07835	0.70	-0.0
1,634,447	+	DZA65_RS07835	0.70	-0.5
1,634,447	+	DZA65_RS07835	0.70	+1.3
1,634,447	+	DZA65_RS07835	0.70	-1.2
1,634,447	+	DZA65_RS07835	0.70	-1.0
1,634,447	+	DZA65_RS07835	0.70	+1.9
1,634,447	+	DZA65_RS07835	0.70	-0.7
1,634,447	+	DZA65_RS07835	0.70	-1.2
1,634,447	+	DZA65_RS07835	0.70	-0.2
1,634,448	-	DZA65_RS07835	0.70	-1.2
1,634,448	-	DZA65_RS07835	0.70	+0.9
1,634,448	-	DZA65_RS07835	0.70	-1.5
1,634,448	-	DZA65_RS07835	0.70	+2.3
1,634,448	-	DZA65_RS07835	0.70	+0.3
1,634,448	-	DZA65_RS07835	0.70	-3.0
1,634,448	-	DZA65_RS07835	0.70	+1.3
1,634,448	-	DZA65_RS07835	0.70	+0.0
1,634,448	-	DZA65_RS07835	0.70	+0.7
1,634,448	-	DZA65_RS07835	0.70	-0.4
1,634,448	-			+1.3
1,634,448	-	DZA65_RS07835	0.70	+0.3
1,634,448	-	DZA65_RS07835	0.70	-0.4
1,634,483	+	DZA65_RS07835	0.72	-0.7
1,634,484	-	DZA65_RS07835	0.72	+0.3
1,634,484	-	DZA65_RS07835	0.72	+0.3
1,634,606	+	DZA65_RS07835	0.79	+0.4
1,634,607	-	DZA65_RS07835	0.79	-2.5
1,634,629	+	DZA65_RS07835	0.81	+0.8
1,634,629	+	DZA65_RS07835	0.81	+0.3
1,634,630	-	DZA65_RS07835	0.81	+0.5
1,634,630	-	DZA65_RS07835	0.81	-0.8
1,634,630	-	DZA65_RS07835	0.81	-0.2
1,634,660	+	DZA65_RS07835	0.82	-0.1
1,634,660	+	DZA65_RS07835	0.82	+0.5
1,634,660	+	DZA65_RS07835	0.82	-2.2
1,634,661	-	DZA65_RS07835	0.82	+0.3
1,634,661	-	DZA65_RS07835	0.82	+1.0
1,634,661	-	DZA65_RS07835	0.82	-3.0
1,634,661	-	DZA65_RS07835	0.82	-0.5
1,634,661	-	DZA65_RS07835	0.82	+0.3
1,634,661	-	DZA65_RS07835	0.82	-0.6
1,634,672	+	DZA65_RS07835	0.83	-0.4
1,634,672	+	DZA65_RS07835	0.83	-1.0
1,634,777	+	DZA65_RS07835	0.90	+1.3
1,634,777	+	DZA65_RS07835	0.90	+1.0
1,634,777	+	DZA65_RS07835	0.90	+0.8
1,635,194	+	DZA65_RS07840	0.37	+0.3
1,635,194	+	DZA65_RS07840	0.37	+0.9
1,635,195	-	DZA65_RS07840	0.37	-0.7
1,635,195	-	DZA65_RS07840	0.37	-0.7
1,635,195	-	DZA65_RS07840	0.37	+0.7
1,635,276	+	DZA65_RS07840	0.49	+0.3
1,635,276	+	DZA65_RS07840	0.49	+1.0
1,635,276	+	DZA65_RS07840	0.49	+0.3
1,635,276	+	DZA65_RS07840	0.49	+1.0
1,635,276	+	DZA65_RS07840	0.49	-1.1
1,635,277	-	DZA65_RS07840	0.50	-0.7
1,635,309	-	DZA65_RS07840	0.55	-1.2
1,635,432	+	DZA65_RS07840	0.73	-0.8
1,635,432	+	DZA65_RS07840	0.73	+0.6
1,635,433	-	DZA65_RS07840	0.74	-1.2
1,635,504	+	DZA65_RS07840	0.84	+0.6
1,635,560	+			-0.7
1,635,560	+			-0.5
1,635,560	+			-0.2
1,635,561	-			-0.4
1,635,561	-			-0.5
1,635,561	-			+0.2
1,635,580	+			+0.0
1,635,580	+			-1.4
1,635,581	-			+0.6
1,635,581	-			+0.3
1,635,615	+			+0.8
1,635,615	+			-0.4
1,635,615	+			+0.7
1,635,615	+			+0.0
1,635,615	+			+1.9
1,635,616	-			+0.9
1,635,616	-			+1.8
1,635,616	-			-0.7
1,635,662	+			+0.7
1,635,662	+			-0.1
1,635,663	-			+0.1
1,635,760	-	DZA65_RS07845	0.10	+0.8

Or see this region's nucleotide sequence