Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07795

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,626,513	+		DZA65_RS07790	0.60	+0.0
1,626,514	-		DZA65_RS07790	0.60	-0.0
1,626,514	-		DZA65_RS07790	0.60	+2.1
1,626,514	-		DZA65_RS07790	0.60	-0.3
1,626,536	+		DZA65_RS07790	0.61	-0.1
1,626,536	+		DZA65_RS07790	0.61	-1.1
1,626,570	+		DZA65_RS07790	0.63	-0.6
1,626,571	-		DZA65_RS07790	0.63	+0.1
1,626,571	-		DZA65_RS07790	0.63	+0.8
1,626,571	-		DZA65_RS07790	0.63	-2.2
1,626,571	-		DZA65_RS07790	0.63	-0.4
1,626,571	-		DZA65_RS07790	0.63	-1.6
1,626,582	+		DZA65_RS07790	0.64	+0.4
1,626,582	+		DZA65_RS07790	0.64	+0.1
1,626,583	-		DZA65_RS07790	0.64	+0.6
1,626,583	-		DZA65_RS07790	0.64	-0.1
1,626,646	+		DZA65_RS07790	0.66	+0.4
1,626,646	+		DZA65_RS07790	0.66	-1.1
1,626,646	+		DZA65_RS07790	0.66	-0.5
1,626,647	-		DZA65_RS07790	0.67	-0.3
1,626,648	+		DZA65_RS07790	0.67	+0.1
1,626,648	+		DZA65_RS07790	0.67	+0.7
1,626,648	+		DZA65_RS07790	0.67	+2.2
1,626,648	+		DZA65_RS07790	0.67	-0.8
1,626,648	+		DZA65_RS07790	0.67	+0.6
1,626,648	+		DZA65_RS07790	0.67	+0.6
1,626,648	+		DZA65_RS07790	0.67	-1.2
1,626,648	+		DZA65_RS07790	0.67	-0.3
1,626,649	-		DZA65_RS07790	0.67	-0.4
1,626,649	-		DZA65_RS07790	0.67	-0.0
1,626,649	-				+0.4
1,626,649	-		DZA65_RS07790	0.67	-0.4
1,626,649	-		DZA65_RS07790	0.67	+1.4
1,626,649	-		DZA65_RS07790	0.67	-0.2
1,626,779	-		DZA65_RS07790	0.73	+0.1
1,626,844	-		DZA65_RS07790	0.76	-2.0
1,626,844	-		DZA65_RS07790	0.76	+0.7
1,626,855	-		DZA65_RS07790	0.76	+1.7
1,627,014	+		DZA65_RS07790	0.84	-0.4
1,627,014	+		DZA65_RS07790	0.84	-0.8
1,627,014	+		DZA65_RS07790	0.84	-1.8
1,627,014	+		DZA65_RS07790	0.84	+0.1
1,627,014	+		DZA65_RS07790	0.84	-0.4
1,627,014	+		DZA65_RS07790	0.84	-0.1
1,627,014	+		DZA65_RS07790	0.84	+0.5
1,627,014	+		DZA65_RS07790	0.84	-1.6
1,627,014	+		DZA65_RS07790	0.84	+0.6
1,627,014	+		DZA65_RS07790	0.84	+0.6
1,627,014	+		DZA65_RS07790	0.84	-2.0
1,627,014	+		DZA65_RS07790	0.84	+1.9
1,627,014	+		DZA65_RS07790	0.84	-0.3
1,627,014	+		DZA65_RS07790	0.84	-0.1
1,627,014	+		DZA65_RS07790	0.84	-2.0
1,627,014	+		DZA65_RS07790	0.84	+1.1
1,627,015	-		DZA65_RS07790	0.84	-1.0
1,627,015	-		DZA65_RS07790	0.84	-0.9
1,627,015	-		DZA65_RS07790	0.84	-0.4
1,627,015	-		DZA65_RS07790	0.84	-1.4
1,627,015	-		DZA65_RS07790	0.84	+0.1
1,627,015	-		DZA65_RS07790	0.84	+0.4
1,627,015	-		DZA65_RS07790	0.84	-0.4
1,627,074	+		DZA65_RS07790	0.86	+0.6
1,627,074	+		DZA65_RS07790	0.86	-1.2
1,627,075	-		DZA65_RS07790	0.86	+1.2
1,627,075	-		DZA65_RS07790	0.86	+0.0
1,627,075	-		DZA65_RS07790	0.86	-1.6
1,627,230	+				-0.9
1,627,231	-				+0.1
1,627,238	+				-0.4
1,627,239	-				-2.8
1,627,338	+				+0.1
1,627,338	+				-2.5
1,627,339	-				-0.2
1,627,339	-				-2.5
1,627,448	+				+0.4
1,627,449	-				-2.5
1,627,449	-				+0.4
1,627,583	+		DZA65_RS07795	0.34	+1.1
1,627,583	+		DZA65_RS07795	0.34	+0.6
1,627,583	+		DZA65_RS07795	0.34	-2.0
1,627,623	-		DZA65_RS07795	0.41	+0.4
1,627,670	+		DZA65_RS07795	0.50	+0.0
1,627,703	+		DZA65_RS07795	0.56	+0.3
1,627,704	-		DZA65_RS07795	0.56	+0.1
1,627,719	+		DZA65_RS07795	0.59	-0.5
1,627,719	+		DZA65_RS07795	0.59	+0.9
1,627,719	+		DZA65_RS07795	0.59	+0.6
1,627,720	-		DZA65_RS07795	0.59	+1.3
1,627,907	+				-0.3
1,627,907	+				-1.5
1,627,907	+				+0.8
1,627,908	-				-0.0
1,627,908	-				-3.0
1,627,908	-				-0.2
1,627,908	-				+1.4
1,627,908	-				+1.5
1,627,926	+				-1.2
1,627,927	-				+0.0
1,627,975	+				-0.2
1,627,982	+				-1.4
1,627,983	-				-0.9
1,628,018	-				-0.8
1,628,020	-				+0.5
1,628,020	-				+0.1
1,628,020	-				+0.5
1,628,200	+				-0.4
1,628,200	+				-0.6
1,628,201	-				+1.9
1,628,211	+				-1.5
1,628,211	+				+1.1
1,628,211	+				-3.3
1,628,212	-				-1.1
1,628,254	+				-0.9
1,628,254	+				-2.2
1,628,254	+				+1.2
1,628,255	-				-0.6
1,628,255	-				+0.9
1,628,255	-				-0.0
1,628,255	-				+1.1
1,628,270	+				+1.7
1,628,271	-				+0.5
1,628,287	-				+0.4
1,628,297	-				+0.5
1,628,361	+				+1.5
1,628,382	-				-0.1
1,628,413	-				-0.1
1,628,467	+		DZA65_RS07800	0.11	+1.9
1,628,481	+		DZA65_RS07800	0.16	-1.6
1,628,481	+		DZA65_RS07800	0.16	+1.5
1,628,481	+		DZA65_RS07800	0.16	-2.2
1,628,481	+		DZA65_RS07800	0.16	+0.6
1,628,482	-		DZA65_RS07800	0.17	+0.5
1,628,482	-		DZA65_RS07800	0.17	+0.4
1,628,487	+		DZA65_RS07800	0.19	-1.2
1,628,487	+		DZA65_RS07800	0.19	+0.8
1,628,546	+		DZA65_RS07800	0.41	+1.4
1,628,547	-		DZA65_RS07800	0.42	-0.5
1,628,556	-		DZA65_RS07800	0.45	+0.4
1,628,583	+		DZA65_RS07800	0.56	+0.4
1,628,584	-		DZA65_RS07800	0.56	+0.5
1,628,584	-		DZA65_RS07800	0.56	-0.8
1,628,703	+				+0.5
1,628,703	+				-0.3
1,628,703	+				-0.1
1,628,703	+				+1.5
1,628,703	+				+1.1
1,628,704	-				+0.5
1,628,704	-				-1.2
1,628,758	+		DZA65_RS07805	0.11	-1.7
1,628,759	-		DZA65_RS07805	0.11	-1.7
1,628,886	+		DZA65_RS07805	0.37	-0.9
1,628,886	+		DZA65_RS07805	0.37	-0.2
1,628,887	-		DZA65_RS07805	0.37	-2.5
1,628,923	+		DZA65_RS07805	0.45	-0.5
1,628,923	+		DZA65_RS07805	0.45	-0.5
1,628,923	+		DZA65_RS07805	0.45	-1.7
1,628,923	+		DZA65_RS07805	0.45	+0.1
1,628,923	+		DZA65_RS07805	0.45	+0.8
1,628,923	+		DZA65_RS07805	0.45	+0.3
1,628,923	+		DZA65_RS07805	0.45	+0.3
1,628,923	+		DZA65_RS07805	0.45	+0.9
1,628,924	-		DZA65_RS07805	0.45	-0.9
1,628,924	-		DZA65_RS07805	0.45	-2.0
1,628,924	-		DZA65_RS07805	0.45	-1.2
1,628,924	-		DZA65_RS07805	0.45	-1.9
1,628,924	-		DZA65_RS07805	0.45	-2.7
1,628,924	-		DZA65_RS07805	0.45	-2.2
1,628,924	-		DZA65_RS07805	0.45	-2.7
1,628,924	-		DZA65_RS07805	0.45	-2.5
1,628,924	-		DZA65_RS07805	0.45	-1.2