Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07705

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,600,542	+		DZA65_RS07695	0.82	+1.3
1,600,695	+				+0.5
1,600,695	+				-1.0
1,600,886	+				-2.0
1,600,886	+				+0.7
1,600,886	+				+0.2
1,600,886	+				+0.1
1,600,886	+				+0.6
1,600,886	+				+0.3
1,600,886	+				+0.8
1,600,886	+				-1.2
1,600,886	+				-1.4
1,600,886	+				-1.5
1,600,886	+				-0.1
1,600,886	+				+1.2
1,600,886	+				+0.3
1,600,886	+				-0.8
1,600,886	+				+0.2
1,600,886	+				-0.1
1,600,886	+				-0.9
1,600,886	+				-0.5
1,600,886	+				+0.6
1,600,886	+				-0.8
1,600,886	+				-0.7
1,600,886	+				-0.2
1,600,887	-				+0.1
1,600,887	-				-0.1
1,600,887	-				+1.2
1,600,887	-				-0.5
1,600,887	-				-0.3
1,600,887	-				-1.5
1,600,887	-				+1.9
1,600,887	-				+1.1
1,600,887	-				+0.5
1,600,887	-				-1.2
1,600,887	-				+1.3
1,600,887	-				-2.2
1,600,887	-				-1.7
1,600,887	-				-1.0
1,600,887	-				+0.8
1,600,887	-				-0.1
1,600,887	-				-0.2
1,600,887	-				-0.9
1,600,887	-				+0.1
1,600,887	-				-0.7
1,600,887	-				+2.2
1,600,887	-				-0.4
1,600,887	-				+0.8
1,600,887	-				+1.0
1,600,887	-				-3.5
1,600,887	-				-0.7
1,600,887	-				+0.3
1,600,887	-				+0.1
1,600,887	-				-0.3
1,600,887	-				-0.2
1,600,887	-				-0.8
1,600,887	-				-0.7
1,600,887	-				-1.8
1,600,890	+				+0.3
1,600,890	+				-1.3
1,600,890	+				+2.8
1,600,890	+				-2.8
1,600,891	-				-0.7
1,600,891	-				+2.7
1,600,891	-				+0.5
1,601,031	+		DZA65_RS07700	0.35	+0.1
1,601,031	+		DZA65_RS07700	0.35	-0.5
1,601,031	+		DZA65_RS07700	0.35	-0.1
1,601,133	+		DZA65_RS07700	0.60	+1.8
1,601,133	+		DZA65_RS07700	0.60	+0.8
1,601,133	+		DZA65_RS07700	0.60	+1.3
1,601,134	-		DZA65_RS07700	0.61	+0.5
1,601,134	-		DZA65_RS07700	0.61	+1.1
1,601,134	-		DZA65_RS07700	0.61	-0.2
1,601,134	-		DZA65_RS07700	0.61	+0.9
1,601,134	-		DZA65_RS07700	0.61	+0.1
1,601,134	-		DZA65_RS07700	0.61	+0.3
1,601,135	+		DZA65_RS07700	0.61	+0.3
1,601,135	+		DZA65_RS07700	0.61	+1.3
1,601,135	+		DZA65_RS07700	0.61	-1.5
1,601,136	-		DZA65_RS07700	0.61	+0.0
1,601,211	-		DZA65_RS07700	0.79	-1.7
1,601,318	-				+0.9
1,601,458	+				+0.7
1,601,459	-				+0.1
1,601,589	+				-3.0
1,601,589	+				-0.5
1,601,637	+				-0.7
1,601,637	+				-0.1
1,601,637	+				-0.1
1,601,637	+				-0.2
1,601,638	-				-1.1
1,601,761	+		DZA65_RS07705	0.11	-0.2
1,601,761	+		DZA65_RS07705	0.11	+0.6
1,601,857	+		DZA65_RS07705	0.14	-0.5
1,601,857	+		DZA65_RS07705	0.14	-1.5
1,601,927	+		DZA65_RS07705	0.16	-1.2
1,601,927	+		DZA65_RS07705	0.16	+1.0
1,601,927	+		DZA65_RS07705	0.16	+0.5
1,601,927	+		DZA65_RS07705	0.16	+0.4
1,601,927	+		DZA65_RS07705	0.16	-0.9
1,601,927	+		DZA65_RS07705	0.16	-0.2
1,601,927	+		DZA65_RS07705	0.16	+0.3
1,601,927	+		DZA65_RS07705	0.16	+0.9
1,601,927	+		DZA65_RS07705	0.16	-0.1
1,601,928	-		DZA65_RS07705	0.16	+0.3
1,601,928	-		DZA65_RS07705	0.16	+1.9
1,601,928	-		DZA65_RS07705	0.16	+0.9
1,601,928	-		DZA65_RS07705	0.16	+0.1
1,601,928	-		DZA65_RS07705	0.16	+0.3
1,601,928	-		DZA65_RS07705	0.16	-1.1
1,601,928	-		DZA65_RS07705	0.16	-1.2
1,601,928	-		DZA65_RS07705	0.16	-0.7
1,601,928	-		DZA65_RS07705	0.16	+0.6
1,601,950	+		DZA65_RS07705	0.16	+1.6
1,602,200	+		DZA65_RS07705	0.23	+1.3
1,602,200	+		DZA65_RS07705	0.23	+1.3
1,602,201	-		DZA65_RS07705	0.23	+0.5
1,602,201	-		DZA65_RS07705	0.23	+0.8
1,602,282	-		DZA65_RS07705	0.25	-0.6
1,602,418	+		DZA65_RS07705	0.28	-0.5
1,602,435	+		DZA65_RS07705	0.29	+0.3
1,602,435	+		DZA65_RS07705	0.29	-0.4
1,602,435	+		DZA65_RS07705	0.29	-0.8
1,602,435	+		DZA65_RS07705	0.29	-0.3
1,602,435	+		DZA65_RS07705	0.29	+0.5
1,602,436	-		DZA65_RS07705	0.29	+1.9
1,602,436	-		DZA65_RS07705	0.29	-0.8
1,602,446	+		DZA65_RS07705	0.29	+0.3
1,602,446	+		DZA65_RS07705	0.29	+0.0
1,602,446	+				-0.2
1,602,447	-		DZA65_RS07705	0.29	-0.9
1,602,447	-		DZA65_RS07705	0.29	+0.3
1,602,447	-		DZA65_RS07705	0.29	+0.6
1,602,470	-		DZA65_RS07705	0.29	+0.1
1,602,535	+		DZA65_RS07705	0.31	-0.9
1,602,623	+		DZA65_RS07705	0.33	-0.4
1,602,696	+		DZA65_RS07705	0.35	+0.0
1,602,696	+		DZA65_RS07705	0.35	-1.3
1,602,696	+		DZA65_RS07705	0.35	+0.1
1,602,696	+		DZA65_RS07705	0.35	+0.7
1,602,697	-		DZA65_RS07705	0.35	-0.1
1,602,697	-				-1.2
1,602,697	-		DZA65_RS07705	0.35	+0.3
1,602,788	+				+1.3
1,602,789	-		DZA65_RS07705	0.37	+0.2
1,602,789	-		DZA65_RS07705	0.37	-0.1
1,602,797	+		DZA65_RS07705	0.38	+0.6
1,602,798	-		DZA65_RS07705	0.38	+1.3
1,602,798	-		DZA65_RS07705	0.38	+0.3
1,602,798	-		DZA65_RS07705	0.38	+0.0
1,602,798	-		DZA65_RS07705	0.38	+0.3
1,602,798	-		DZA65_RS07705	0.38	-0.8
1,602,798	-		DZA65_RS07705	0.38	-0.5
1,602,800	+		DZA65_RS07705	0.38	-0.7
1,602,801	-		DZA65_RS07705	0.38	+0.1
1,602,801	-		DZA65_RS07705	0.38	+0.2
1,602,801	-		DZA65_RS07705	0.38	+0.0
1,602,869	+		DZA65_RS07705	0.39	+0.2
1,602,869	+		DZA65_RS07705	0.39	-0.8
1,602,893	+		DZA65_RS07705	0.40	+0.1
1,602,893	+		DZA65_RS07705	0.40	-0.5
1,602,893	+		DZA65_RS07705	0.40	-0.8
1,602,894	-		DZA65_RS07705	0.40	-0.1
1,602,935	+		DZA65_RS07705	0.41	-0.4
1,602,935	+		DZA65_RS07705	0.41	+0.1
1,602,936	-		DZA65_RS07705	0.41	-0.6
1,603,056	-		DZA65_RS07705	0.44	+1.0
1,603,118	+		DZA65_RS07705	0.46	-2.0
1,603,118	+		DZA65_RS07705	0.46	-1.1
1,603,119	-		DZA65_RS07705	0.46	-1.7
1,603,119	-		DZA65_RS07705	0.46	+0.9
1,603,178	+		DZA65_RS07705	0.47	-0.4
1,603,179	-		DZA65_RS07705	0.47	-0.5
1,603,179	-		DZA65_RS07705	0.47	-0.5
1,603,179	-		DZA65_RS07705	0.47	+0.1
1,603,185	-		DZA65_RS07705	0.47	-1.3
1,603,247	+		DZA65_RS07705	0.49	+0.1
1,603,248	-		DZA65_RS07705	0.49	+1.1
1,603,248	-				+2.7
1,603,248	-		DZA65_RS07705	0.49	-0.9
1,603,248	-				+1.3
1,603,248	-		DZA65_RS07705	0.49	+1.3
1,603,299	+		DZA65_RS07705	0.50	-0.1
1,603,299	+		DZA65_RS07705	0.50	-1.2
1,603,300	-		DZA65_RS07705	0.50	-0.4
1,603,359	+		DZA65_RS07705	0.52	+1.2
1,603,360	-		DZA65_RS07705	0.52	+1.2
1,603,376	+		DZA65_RS07705	0.52	+1.3
1,603,377	-		DZA65_RS07705	0.52	-0.5
1,603,377	-		DZA65_RS07705	0.52	+0.3
1,603,377	-		DZA65_RS07705	0.52	+0.1
1,603,377	-		DZA65_RS07705	0.52	-0.1
1,603,439	+		DZA65_RS07705	0.54	-0.4
1,603,461	+		DZA65_RS07705	0.54	+0.9
1,603,461	+		DZA65_RS07705	0.54	+0.7
1,603,461	+		DZA65_RS07705	0.54	+1.3
1,603,461	+		DZA65_RS07705	0.54	+0.5
1,603,462	-		DZA65_RS07705	0.54	+0.1
1,603,462	-		DZA65_RS07705	0.54	-0.4
1,603,598	+		DZA65_RS07705	0.58	-0.1
1,603,598	+		DZA65_RS07705	0.58	+0.1
1,603,598	+		DZA65_RS07705	0.58	-0.1
1,603,598	+		DZA65_RS07705	0.58	+1.0
1,603,599	-		DZA65_RS07705	0.58	-0.4
1,603,599	-		DZA65_RS07705	0.58	+1.3
1,603,599	-		DZA65_RS07705	0.58	-0.8
1,603,599	-		DZA65_RS07705	0.58	-0.1
1,603,820	+		DZA65_RS07705	0.63	+1.0
1,603,889	+		DZA65_RS07705	0.65	-0.7
1,604,010	-		DZA65_RS07705	0.68	-1.2
1,604,010	-		DZA65_RS07705	0.68	-1.2
1,604,010	-		DZA65_RS07705	0.68	-1.2
1,604,069	+		DZA65_RS07705	0.70	-1.1
1,604,070	-		DZA65_RS07705	0.70	-0.7
1,604,168	+		DZA65_RS07705	0.72	+0.7
1,604,168	+		DZA65_RS07705	0.72	+0.9
1,604,169	-		DZA65_RS07705	0.72	+0.3
1,604,169	-		DZA65_RS07705	0.72	-1.7
1,604,169	-		DZA65_RS07705	0.72	-0.5
1,604,169	-		DZA65_RS07705	0.72	+0.0
1,604,169	-		DZA65_RS07705	0.72	-0.4
1,604,294	+		DZA65_RS07705	0.75	+0.1
1,604,295	-		DZA65_RS07705	0.75	+0.9
1,604,295	-		DZA65_RS07705	0.75	-1.1
1,604,295	-		DZA65_RS07705	0.75	-0.7
1,604,381	+		DZA65_RS07705	0.78	-0.5
1,604,519	+		DZA65_RS07705	0.81	+0.7
1,604,519	+		DZA65_RS07705	0.81	+0.0
1,604,519	+		DZA65_RS07705	0.81	-0.7
1,604,520	-		DZA65_RS07705	0.81	+1.9
1,604,520	-		DZA65_RS07705	0.81	-0.2
1,604,521	+		DZA65_RS07705	0.81	-0.2
1,604,521	+		DZA65_RS07705	0.81	+0.9
1,604,603	+		DZA65_RS07705	0.83	+0.6
1,604,609	+		DZA65_RS07705	0.83	-2.0
1,604,610	-		DZA65_RS07705	0.83	+0.5
1,604,630	-		DZA65_RS07705	0.84	-0.2
1,604,636	-		DZA65_RS07705	0.84	+0.7
1,604,741	+		DZA65_RS07705	0.87	+1.3
1,604,742	-				+1.3
1,604,829	+		DZA65_RS07705	0.89	+1.3
1,604,865	+				+0.9
1,604,866	-		DZA65_RS07705	0.90	-0.7
1,604,866	-		DZA65_RS07705	0.90	+1.5
1,604,885	+				+0.2
1,604,885	+				-0.9
1,604,885	+				+0.9
1,604,885	+				+0.3
1,604,886	-				-1.4
1,604,886	-				-0.6
1,605,143	+				-0.7
1,605,143	+				-0.2
1,605,143	+				+1.1
1,605,164	+				+0.6
1,605,164	+				+0.2
1,605,164	+				+1.1
1,605,164	+				-1.1
1,605,164	+				-0.7
1,605,164	+				+0.9
1,605,165	-				-1.0
1,605,165	-				+0.5
1,605,205	+				-0.4
1,605,206	-				+0.4
1,605,209	+				-0.1
1,605,209	+				+2.3
1,605,210	-				-0.4
1,605,210	-				-0.4
1,605,210	-				+0.7
1,605,215	+				-0.1
1,605,215	+				+0.6
1,605,216	-				-0.6
1,605,232	+				-0.1
1,605,232	+				-0.7
1,605,232	+				-0.5
1,605,284	+				-0.7
1,605,284	+				-0.2
1,605,285	-				-1.5
1,605,304	+				+0.8
1,605,304	+				+1.9
1,605,304	+				-1.5
1,605,305	-				+0.9
1,605,305	-				+0.8
1,605,309	-				-3.6
1,605,309	-				-0.4
1,605,342	-				+0.1
1,605,343	+				+0.1
1,605,343	+				+1.2
1,605,343	+				-0.4
1,605,343	+				-2.2
1,605,344	-				+0.1
1,605,344	-				-0.1
1,605,349	+				+0.7
1,605,350	-				-1.5
1,605,351	+				-0.1
1,605,351	+				+0.8
1,605,352	-				+0.3
1,605,352	-				+2.7
1,605,370	-				+0.9
1,605,431	+				+0.2
1,605,432	-				+1.2
1,605,457	+				+1.9
1,605,457	+				-2.7
1,605,482	-				-0.2
1,605,482	-				-0.6
1,605,484	+				+1.5
1,605,484	+				-1.0
1,605,485	-				-0.1
1,605,485	-				-0.2
1,605,558	+				-0.7
1,605,641	-				+0.7
1,606,015	+				-0.5
1,606,016	-				-1.8
1,606,016	-				-1.7
1,606,016	-				+1.7
1,606,019	-				-0.7
1,606,019	-				-3.1
1,606,019	-				-0.5
1,606,019	-				-1.2
1,606,019	-				-0.8
1,606,139	-				-0.1