Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07545

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
1,571,390	+	DZA65_RS07540	0.56	+0.1
1,571,390	+	DZA65_RS07540	0.56	+1.1
1,571,391	-	DZA65_RS07540	0.56	+0.6
1,571,407	-	DZA65_RS07540	0.57	+0.9
1,571,407	-	DZA65_RS07540	0.57	-0.5
1,571,443	-	DZA65_RS07540	0.58	-2.4
1,571,443	-	DZA65_RS07540	0.58	+0.1
1,571,462	+	DZA65_RS07540	0.59	+0.0
1,571,462	+	DZA65_RS07540	0.59	-0.2
1,571,516	+	DZA65_RS07540	0.62	-0.2
1,571,516	+	DZA65_RS07540	0.62	+0.9
1,571,517	-	DZA65_RS07540	0.62	-0.3
1,571,622	+	DZA65_RS07540	0.67	-2.2
1,571,666	+	DZA65_RS07540	0.69	+0.6
1,571,717	+	DZA65_RS07540	0.71	-0.2
1,571,740	+	DZA65_RS07540	0.73	+0.5
1,571,740	+	DZA65_RS07540	0.73	-0.1
1,571,740	+	DZA65_RS07540	0.73	-0.2
1,571,741	-	DZA65_RS07540	0.73	-1.6
1,571,741	-	DZA65_RS07540	0.73	-0.6
1,571,741	-	DZA65_RS07540	0.73	+0.1
1,571,741	-	DZA65_RS07540	0.73	-0.8
1,571,747	+	DZA65_RS07540	0.73	-0.2
1,571,793	-	DZA65_RS07540	0.75	-0.4
1,571,797	+	DZA65_RS07540	0.75	+0.1
1,571,798	+	DZA65_RS07540	0.75	+2.2
1,571,798	+	DZA65_RS07540	0.75	-1.9
1,571,799	-	DZA65_RS07540	0.75	+0.1
1,571,810	+	DZA65_RS07540	0.76	+1.2
1,571,863	+	DZA65_RS07540	0.78	+0.6
1,571,910	+	DZA65_RS07540	0.81	+1.0
1,571,911	-	DZA65_RS07540	0.81	-0.6
1,572,042	+	DZA65_RS07540	0.87	+0.7
1,572,043	-	DZA65_RS07540	0.87	+1.4
1,572,049	+	DZA65_RS07540	0.87	+0.5
1,572,050	-	DZA65_RS07540	0.87	+0.4
1,572,050	-	DZA65_RS07540	0.87	+0.7
1,572,050	-	DZA65_RS07540	0.87	+1.4
1,572,050	-	DZA65_RS07540	0.87	-0.4
1,572,053	-	DZA65_RS07540	0.87	+0.3
1,572,053	-	DZA65_RS07540	0.87	-0.4
1,572,059	-	DZA65_RS07540	0.88	+1.1
1,572,059	-	DZA65_RS07540	0.88	-2.2
1,572,062	+	DZA65_RS07540	0.88	-0.6
1,572,062	+	DZA65_RS07540	0.88	+0.7
1,572,062	+	DZA65_RS07540	0.88	-0.6
1,572,063	-	DZA65_RS07540	0.88	-0.4
1,572,063	-	DZA65_RS07540	0.88	+0.4
1,572,252	-			-1.9
1,572,252	-			+0.2
1,572,257	-			+0.5
1,572,283	+			-1.0
1,572,293	+			-0.2
1,572,293	+			-0.7
1,572,294	-			+1.8
1,572,294	-			-0.8
1,572,295	+			-0.4
1,572,295	+			-1.0
1,572,295	+			-0.4
1,572,295	+			-1.4
1,572,295	+			-1.2
1,572,296	-			-0.0
1,572,296	-			+0.5
1,572,296	-			+0.0
1,572,296	-			-0.9
1,572,296	-			+0.8
1,572,296	-			+1.4
1,572,296	-			-1.4
1,572,305	+			+0.5
1,572,305	+			-0.2
1,572,316	-			-0.6
1,572,316	-			-0.3
1,572,328	-			-1.2
1,572,328	-			+0.4
1,572,328	-			-0.1
1,572,407	+			+0.4
1,572,408	-			-0.0
1,572,408	-			-0.1
1,572,423	+			+0.9
1,572,472	+			-0.4
1,572,473	-			-0.6
1,572,473	-			+0.3
1,572,497	+			-1.2
1,572,498	-			-0.3
1,572,499	+			+1.7
1,572,499	+			+0.1
1,572,499	+			+0.4
1,572,500	-			-1.9
1,572,505	-			-0.6
1,572,505	-			-3.1
1,572,510	+			-2.1
1,572,511	-			+0.5
1,572,511	-			+1.5
1,572,604	+	DZA65_RS07545	0.11	-1.4
1,572,632	+	DZA65_RS07545	0.12	+1.1
1,572,632	+	DZA65_RS07545	0.12	-0.3
1,572,633	-	DZA65_RS07545	0.12	+0.9
1,572,633	-	DZA65_RS07545	0.12	-0.8
1,572,665	-	DZA65_RS07545	0.13	+1.0
1,572,720	+	DZA65_RS07545	0.15	+0.9
1,572,720	+	DZA65_RS07545	0.15	+0.4
1,572,720	+	DZA65_RS07545	0.15	+0.1
1,572,720	+	DZA65_RS07545	0.15	-0.9
1,572,720	+	DZA65_RS07545	0.15	-0.2
1,572,721	-	DZA65_RS07545	0.15	-0.0
1,572,721	-	DZA65_RS07545	0.15	+1.4
1,572,721	-	DZA65_RS07545	0.15	-0.5
1,572,761	+	DZA65_RS07545	0.17	-1.2
1,572,814	-	DZA65_RS07545	0.19	-0.8
1,572,887	-	DZA65_RS07545	0.22	-0.2
1,572,989	+	DZA65_RS07545	0.26	-2.1
1,572,990	-	DZA65_RS07545	0.26	+1.0
1,572,990	-	DZA65_RS07545	0.26	-2.4
1,572,990	-	DZA65_RS07545	0.26	-2.2
1,572,990	-	DZA65_RS07545	0.26	+0.6
1,572,990	-	DZA65_RS07545	0.26	-0.2
1,572,990	-	DZA65_RS07545	0.26	+0.6
1,573,023	-	DZA65_RS07545	0.27	+0.5
1,573,023	-	DZA65_RS07545	0.27	-1.2
1,573,049	+	DZA65_RS07545	0.28	-1.9
1,573,049	+	DZA65_RS07545	0.28	+0.4
1,573,049	+	DZA65_RS07545	0.28	-0.0
1,573,049	+	DZA65_RS07545	0.28	-0.6
1,573,049	+	DZA65_RS07545	0.28	+0.4
1,573,050	-	DZA65_RS07545	0.28	-1.3
1,573,050	-	DZA65_RS07545	0.28	+1.6
1,573,050	-	DZA65_RS07545	0.28	-0.1
1,573,052	-	DZA65_RS07545	0.28	-0.3
1,573,052	-	DZA65_RS07545	0.28	-0.2
1,573,052	-	DZA65_RS07545	0.28	-0.4
1,573,076	+	DZA65_RS07545	0.29	-0.6
1,573,077	-	DZA65_RS07545	0.29	+0.4
1,573,085	+	DZA65_RS07545	0.29	-0.0
1,573,086	-	DZA65_RS07545	0.30	+0.7
1,573,086	-	DZA65_RS07545	0.30	+2.0
1,573,086	-	DZA65_RS07545	0.30	-1.3
1,573,131	-	DZA65_RS07545	0.31	+1.6
1,573,175	+	DZA65_RS07545	0.33	-0.9
1,573,175	+	DZA65_RS07545	0.33	-1.4
1,573,176	-	DZA65_RS07545	0.33	-0.8
1,573,253	+	DZA65_RS07545	0.36	-1.2
1,573,253	+	DZA65_RS07545	0.36	+0.4
1,573,291	-	DZA65_RS07545	0.37	+2.0
1,573,319	+	DZA65_RS07545	0.39	+0.5
1,573,319	+	DZA65_RS07545	0.39	+0.7
1,573,319	+	DZA65_RS07545	0.39	+0.4
1,573,319	+	DZA65_RS07545	0.39	-0.4
1,573,319	+			+0.7
1,573,319	+	DZA65_RS07545	0.39	-0.9
1,573,319	+	DZA65_RS07545	0.39	-1.8
1,573,320	-	DZA65_RS07545	0.39	+0.9
1,573,320	-	DZA65_RS07545	0.39	-0.6
1,573,320	-	DZA65_RS07545	0.39	+0.6
1,573,320	-	DZA65_RS07545	0.39	-0.6
1,573,320	-	DZA65_RS07545	0.39	-1.0
1,573,320	-	DZA65_RS07545	0.39	-0.7
1,573,320	-	DZA65_RS07545	0.39	-1.9
1,573,334	+	DZA65_RS07545	0.39	+0.4
1,573,335	-	DZA65_RS07545	0.39	-1.2
1,573,335	-	DZA65_RS07545	0.39	-0.9
1,573,335	-	DZA65_RS07545	0.39	-0.1
1,573,335	-	DZA65_RS07545	0.39	-1.0
1,573,399	+	DZA65_RS07545	0.42	-0.5
1,573,399	+	DZA65_RS07545	0.42	+2.0
1,573,400	-	DZA65_RS07545	0.42	-0.4
1,573,416	+	DZA65_RS07545	0.42	-0.6
1,573,416	+	DZA65_RS07545	0.42	-1.3
1,573,416	+			+1.8
1,573,416	+	DZA65_RS07545	0.42	-0.8
1,573,417	-	DZA65_RS07545	0.42	-1.4
1,573,417	-	DZA65_RS07545	0.42	+0.4
1,573,525	+	DZA65_RS07545	0.47	+0.4
1,573,525	+	DZA65_RS07545	0.47	+0.9
1,573,556	+	DZA65_RS07545	0.48	+1.0
1,573,556	+	DZA65_RS07545	0.48	+0.5
1,573,611	+	DZA65_RS07545	0.50	+0.6
1,573,612	-	DZA65_RS07545	0.50	-0.8
1,573,612	-	DZA65_RS07545	0.50	-3.1
1,573,612	-	DZA65_RS07545	0.50	-1.2
1,573,612	-	DZA65_RS07545	0.50	-0.6
1,573,612	-	DZA65_RS07545	0.50	+0.4
1,573,619	-	DZA65_RS07545	0.50	-0.2
1,573,621	-	DZA65_RS07545	0.50	+0.4
1,573,621	-	DZA65_RS07545	0.50	-0.6
1,573,621	-	DZA65_RS07545	0.50	+0.0
1,573,688	+	DZA65_RS07545	0.53	-0.1
1,573,688	+	DZA65_RS07545	0.53	-0.0
1,573,688	+	DZA65_RS07545	0.53	-0.8
1,573,689	-	DZA65_RS07545	0.53	+0.7
1,573,689	-	DZA65_RS07545	0.53	-1.2
1,573,689	-	DZA65_RS07545	0.53	+1.0
1,573,689	-	DZA65_RS07545	0.53	+1.8
1,573,689	-	DZA65_RS07545	0.53	-0.2
1,573,689	-	DZA65_RS07545	0.53	-1.6
1,573,689	-	DZA65_RS07545	0.53	-0.6
1,573,690	+	DZA65_RS07545	0.53	+0.0
1,573,691	-	DZA65_RS07545	0.53	-0.6
1,573,691	-	DZA65_RS07545	0.53	+1.2
1,573,691	-	DZA65_RS07545	0.53	+0.2
1,573,706	+	DZA65_RS07545	0.54	-0.6
1,573,715	-	DZA65_RS07545	0.54	-1.9
1,573,760	+	DZA65_RS07545	0.56	-0.4
1,573,760	+	DZA65_RS07545	0.56	-2.3
1,573,772	+	DZA65_RS07545	0.56	-0.1
1,573,772	+	DZA65_RS07545	0.56	-0.4
1,573,772	+	DZA65_RS07545	0.56	-0.0
1,573,773	-	DZA65_RS07545	0.56	-0.5
1,573,773	-	DZA65_RS07545	0.56	+0.4
1,573,793	+	DZA65_RS07545	0.57	+0.4
1,573,794	-	DZA65_RS07545	0.57	-1.9
1,573,794	-	DZA65_RS07545	0.57	-0.5
1,573,794	-	DZA65_RS07545	0.57	+1.5
1,573,796	-	DZA65_RS07545	0.57	-0.8
1,573,796	-	DZA65_RS07545	0.57	+0.2
1,573,817	+	DZA65_RS07545	0.58	-0.1
1,573,817	+	DZA65_RS07545	0.58	-2.0
1,573,817	+	DZA65_RS07545	0.58	+0.5
1,573,818	-	DZA65_RS07545	0.58	+1.7
1,573,820	-	DZA65_RS07545	0.58	-0.9
1,573,836	+	DZA65_RS07545	0.59	+1.1
1,573,845	-	DZA65_RS07545	0.59	+1.1
1,573,857	+	DZA65_RS07545	0.59	-0.0
1,573,857	+	DZA65_RS07545	0.59	-0.2
1,573,857	+	DZA65_RS07545	0.59	-0.3
1,573,862	-	DZA65_RS07545	0.60	+0.2
1,573,862	-	DZA65_RS07545	0.60	-0.4
1,573,869	-	DZA65_RS07545	0.60	+0.2
1,573,952	+	DZA65_RS07545	0.63	-0.6
1,573,987	+	DZA65_RS07545	0.65	+0.2
1,574,070	+	DZA65_RS07545	0.68	-0.4
1,574,101	+	DZA65_RS07545	0.69	+0.2
1,574,101	+	DZA65_RS07545	0.69	+0.0
1,574,102	-	DZA65_RS07545	0.69	-1.2
1,574,108	-	DZA65_RS07545	0.69	+1.1
1,574,136	+	DZA65_RS07545	0.70	+0.4
1,574,136	+	DZA65_RS07545	0.70	-0.4
1,574,136	+	DZA65_RS07545	0.70	+0.1
1,574,137	-	DZA65_RS07545	0.70	-2.0
1,574,137	-	DZA65_RS07545	0.70	+1.0
1,574,137	-	DZA65_RS07545	0.70	-0.1
1,574,138	+	DZA65_RS07545	0.70	+1.2
1,574,138	+	DZA65_RS07545	0.70	+0.2
1,574,138	+	DZA65_RS07545	0.70	-1.6
1,574,138	+	DZA65_RS07545	0.70	-0.9
1,574,138	+	DZA65_RS07545	0.70	+0.6
1,574,138	+	DZA65_RS07545	0.70	-0.0
1,574,138	+	DZA65_RS07545	0.70	+0.5
1,574,138	+	DZA65_RS07545	0.70	-0.3
1,574,138	+	DZA65_RS07545	0.70	-1.4
1,574,138	+	DZA65_RS07545	0.70	-0.9
1,574,138	+	DZA65_RS07545	0.70	+0.4
1,574,139	-	DZA65_RS07545	0.70	-0.2
1,574,139	-	DZA65_RS07545	0.70	+0.0
1,574,144	+	DZA65_RS07545	0.71	-1.9
1,574,145	-	DZA65_RS07545	0.71	+1.4
1,574,145	-	DZA65_RS07545	0.71	+0.7
1,574,147	-	DZA65_RS07545	0.71	+1.1
1,574,147	-	DZA65_RS07545	0.71	+1.7
1,574,323	+	DZA65_RS07545	0.78	-0.9
1,574,326	+	DZA65_RS07545	0.78	-0.0
1,574,326	+	DZA65_RS07545	0.78	+0.1
1,574,326	+	DZA65_RS07545	0.78	-1.6
1,574,327	-	DZA65_RS07545	0.78	-1.9
1,574,327	-	DZA65_RS07545	0.78	-0.6
1,574,327	-	DZA65_RS07545	0.78	+0.4
1,574,378	+	DZA65_RS07545	0.80	+0.4
1,574,378	+	DZA65_RS07545	0.80	-1.1
1,574,379	-	DZA65_RS07545	0.80	+0.4
1,574,379	-	DZA65_RS07545	0.80	-0.1
1,574,379	-	DZA65_RS07545	0.80	-0.6
1,574,379	-	DZA65_RS07545	0.80	+0.4
1,574,379	-	DZA65_RS07545	0.80	-2.9
1,574,383	+	DZA65_RS07545	0.80	-0.9
1,574,384	-	DZA65_RS07545	0.80	+0.1
1,574,384	-	DZA65_RS07545	0.80	+0.2
1,574,384	-	DZA65_RS07545	0.80	-2.0
1,574,386	-	DZA65_RS07545	0.80	+0.8
1,574,426	+	DZA65_RS07545	0.82	+0.4
1,574,427	-	DZA65_RS07545	0.82	+3.2
1,574,517	+	DZA65_RS07545	0.85	-0.8
1,574,517	+	DZA65_RS07545	0.85	-1.0
1,574,517	+	DZA65_RS07545	0.85	+0.1
1,574,518	-	DZA65_RS07545	0.85	+0.8
1,574,518	-	DZA65_RS07545	0.85	+1.0
1,574,518	-	DZA65_RS07545	0.85	-0.3
1,574,518	-	DZA65_RS07545	0.85	-0.3
1,574,518	-	DZA65_RS07545	0.85	+0.1
1,574,521	+	DZA65_RS07545	0.85	-1.4
1,574,521	+	DZA65_RS07545	0.85	-0.6
1,574,521	+	DZA65_RS07545	0.85	+1.4
1,574,521	+	DZA65_RS07545	0.85	+0.1
1,574,521	+	DZA65_RS07545	0.85	-0.6
1,574,521	+	DZA65_RS07545	0.85	-1.2
1,574,521	+	DZA65_RS07545	0.85	-0.4
1,574,521	+	DZA65_RS07545	0.85	-1.2
1,574,521	+	DZA65_RS07545	0.85	-0.1
1,574,521	+	DZA65_RS07545	0.85	-0.4
1,574,521	+	DZA65_RS07545	0.85	+0.6
1,574,521	+	DZA65_RS07545	0.85	-0.2
1,574,521	+	DZA65_RS07545	0.85	-1.6
1,574,521	+	DZA65_RS07545	0.85	+0.4
1,574,521	+	DZA65_RS07545	0.85	+0.1
1,574,521	+	DZA65_RS07545	0.85	-0.0
1,574,521	+	DZA65_RS07545	0.85	-1.2
1,574,521	+	DZA65_RS07545	0.85	+1.1
1,574,522	-	DZA65_RS07545	0.85	+0.7
1,574,522	-	DZA65_RS07545	0.85	+1.0
1,574,522	-	DZA65_RS07545	0.85	+0.7
1,574,522	-	DZA65_RS07545	0.85	-0.1
1,574,522	-	DZA65_RS07545	0.85	-0.8
1,574,522	-	DZA65_RS07545	0.85	-0.0
1,574,522	-	DZA65_RS07545	0.85	-2.1
1,574,522	-	DZA65_RS07545	0.85	+0.2
1,574,522	-	DZA65_RS07545	0.85	-1.6
1,574,522	-	DZA65_RS07545	0.85	-0.0
1,574,522	-	DZA65_RS07545	0.85	+0.4
1,574,522	-	DZA65_RS07545	0.85	-0.5
1,574,522	-	DZA65_RS07545	0.85	-0.9
1,574,522	-	DZA65_RS07545	0.85	-0.3
1,574,522	-	DZA65_RS07545	0.85	+0.2
1,574,547	-	DZA65_RS07545	0.86	-1.3
1,574,612	+	DZA65_RS07545	0.89	+0.6
1,574,619	+	DZA65_RS07545	0.89	+0.4
1,574,620	-	DZA65_RS07545	0.89	-0.1
1,574,620	-	DZA65_RS07545	0.89	-0.2
1,574,623	+	DZA65_RS07545	0.89	+0.4
1,574,623	+	DZA65_RS07545	0.89	-1.1
1,574,623	+	DZA65_RS07545	0.89	+0.6
1,574,623	+	DZA65_RS07545	0.89	-0.3
1,574,623	+	DZA65_RS07545	0.89	+1.0
1,574,624	-	DZA65_RS07545	0.89	+0.3
1,574,624	-	DZA65_RS07545	0.89	-0.0
1,574,624	-	DZA65_RS07545	0.89	-1.6
1,574,628	+	DZA65_RS07545	0.89	-0.5
1,574,657	+			-2.9
1,574,704	+			-1.9
1,574,704	+			-0.8
1,574,705	-			+0.9
1,574,705	-			-1.6
1,574,706	+			-0.8
1,574,706	+			-0.8
1,574,706	+			-1.9
1,574,706	+			-0.2
1,574,707	-			-1.6
1,574,707	-			+0.5
1,574,707	-			-0.2
1,574,717	+			+0.5
1,574,717	+			-0.8
1,574,718	-			-0.9
1,574,718	-			-1.9
1,574,718	-			-1.4
1,574,718	-			-1.9
1,574,719	+			-0.4
1,574,720	-			-0.0
1,574,801	-			-0.8
1,574,801	-			-1.1
1,574,838	+			-2.9
1,574,851	+			-1.9
1,574,851	+			+0.2
1,574,851	+			-1.3
1,574,851	+			+0.2
1,574,852	-			+0.1
1,574,852	-			-0.1
1,574,852	-			+0.5
1,574,872	+			+1.2
1,574,899	+			+0.4
1,574,900	-			-0.4
1,574,900	-			-1.0
1,574,900	-			+2.4
1,574,900	-			-0.2
1,574,900	-			-0.4
1,574,915	+			-3.3
1,574,916	-			-2.6
1,574,916	-			+0.4
1,574,953	+			+1.6
1,575,009	+			-0.8
1,575,023	+	DZA65_RS07550	0.10	+0.0
1,575,023	+	DZA65_RS07550	0.10	+1.1
1,575,023	+	DZA65_RS07550	0.10	-1.4
1,575,023	+	DZA65_RS07550	0.10	-0.4
1,575,023	+	DZA65_RS07550	0.10	-1.6
1,575,023	+			+0.8
1,575,039	+	DZA65_RS07550	0.12	-0.6
1,575,039	+	DZA65_RS07550	0.12	-1.2
1,575,039	+	DZA65_RS07550	0.12	-0.8
1,575,061	+	DZA65_RS07550	0.13	+1.4
1,575,062	-	DZA65_RS07550	0.13	-0.6
1,575,126	+	DZA65_RS07550	0.19	-0.4
1,575,236	+	DZA65_RS07550	0.28	-1.3
1,575,247	+	DZA65_RS07550	0.29	+0.0
1,575,309	+	DZA65_RS07550	0.34	+0.2
1,575,309	+	DZA65_RS07550	0.34	-1.0
1,575,309	+	DZA65_RS07550	0.34	+1.2
1,575,309	+	DZA65_RS07550	0.34	+0.1
1,575,346	+	DZA65_RS07550	0.37	-2.3
1,575,408	+	DZA65_RS07550	0.42	+3.0
1,575,408	+	DZA65_RS07550	0.42	+0.4
1,575,408	+	DZA65_RS07550	0.42	-0.3
1,575,515	+	DZA65_RS07550	0.50	-0.2
1,575,517	+	DZA65_RS07550	0.50	-2.9
1,575,533	+	DZA65_RS07550	0.52	-0.8
1,575,533	+	DZA65_RS07550	0.52	+0.4
1,575,533	+	DZA65_RS07550	0.52	-3.1
1,575,637	+	DZA65_RS07550	0.60	-0.8
1,575,637	+	DZA65_RS07550	0.60	-0.5
1,575,712	+	DZA65_RS07550	0.66	-0.2
1,575,748	+	DZA65_RS07550	0.69	+0.9
1,575,751	+	DZA65_RS07550	0.70	+0.4
1,575,751	+	DZA65_RS07550	0.70	-0.8
1,575,769	+	DZA65_RS07550	0.71	-0.3
1,575,874	+	DZA65_RS07550	0.80	-1.8
1,575,874	+	DZA65_RS07550	0.80	+0.1
1,575,874	+	DZA65_RS07550	0.80	-0.9

Or see this region's nucleotide sequence