Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07075

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,466,137	+		DZA65_RS07070	0.57	-0.2
1,466,138	-		DZA65_RS07070	0.57	+0.7
1,466,163	+		DZA65_RS07070	0.58	-1.0
1,466,163	+		DZA65_RS07070	0.58	+0.7
1,466,164	-		DZA65_RS07070	0.58	+0.6
1,466,164	-		DZA65_RS07070	0.58	+1.0
1,466,283	+		DZA65_RS07070	0.65	+0.1
1,466,284	-		DZA65_RS07070	0.65	+0.6
1,466,284	-		DZA65_RS07070	0.65	-2.1
1,466,284	-		DZA65_RS07070	0.65	+0.9
1,466,284	-		DZA65_RS07070	0.65	-0.9
1,466,548	+		DZA65_RS07070	0.80	+1.3
1,466,549	-		DZA65_RS07070	0.80	+0.9
1,466,776	+				+1.0
1,466,800	+				-1.4
1,466,800	+				-0.6
1,466,801	-				-2.4
1,466,895	+				+1.2
1,466,895	+				-0.4
1,466,896	-				-0.6
1,466,924	+				-1.4
1,466,924	+				+0.1
1,466,925	-				-0.0
1,466,925	-				-0.4
1,466,927	+				+1.9
1,466,927	+				-1.9
1,466,928	-				+0.7
1,466,928	-				-0.8
1,466,928	-				-1.2
1,466,928	-				-1.1
1,466,980	+				-0.0
1,466,988	+				-0.8
1,466,988	+				-0.2
1,466,989	-				+0.7
1,466,989	-				-0.1
1,466,989	-				+1.6
1,466,989	-				+0.2
1,466,998	+				-1.9
1,466,998	+				-0.2
1,466,998	+				-0.8
1,466,998	+				-1.1
1,466,998	+				+0.8
1,466,999	-				-0.8
1,466,999	-				-0.2
1,466,999	-				-0.4
1,466,999	-				+1.7
1,466,999	-				+0.8
1,466,999	-				-0.0
1,466,999	-				-0.6
1,466,999	-				+1.3
1,466,999	-				-0.2
1,466,999	-				+1.1
1,466,999	-				+1.4
1,466,999	-				+2.2
1,466,999	-				+0.3
1,467,002	+				+0.2
1,467,002	+				+0.7
1,467,002	+				-0.0
1,467,002	+				+1.2
1,467,002	+				+0.9
1,467,002	+				-0.5
1,467,003	-				+0.3
1,467,003	-				+0.3
1,467,003	-				-0.1
1,467,003	-				-1.0
1,467,003	-				+0.1
1,467,012	-				-2.2
1,467,012	-				-0.6
1,467,017	+				-0.6
1,467,017	+				-1.6
1,467,017	+				+0.0
1,467,017	+				+1.8
1,467,017	+				+0.1
1,467,017	+				-0.1
1,467,018	-				-1.9
1,467,018	-				+0.1
1,467,018	-				-1.0
1,467,018	-				+1.0
1,467,018	-				-0.1
1,467,018	-				+1.4
1,467,018	-				-0.0
1,467,018	-				+0.7
1,467,018	-				+0.3
1,467,018	-				-1.9
1,467,018	-				+0.7
1,467,018	-				-0.6
1,467,018	-				-1.9
1,467,021	+				+0.2
1,467,021	+				+1.0
1,467,021	+				+0.3
1,467,021	+				+0.2
1,467,022	-				+1.2
1,467,022	-				+0.1
1,467,022	-				+0.4
1,467,022	-				-0.2
1,467,022	-				+1.0
1,467,022	-				-0.1
1,467,030	+				-1.8
1,467,030	+				+0.2
1,467,031	-				-0.8
1,467,036	+				+0.0
1,467,036	+				+1.6
1,467,036	+				-1.2
1,467,036	+				+0.8
1,467,037	-				-0.4
1,467,037	-				+0.1
1,467,037	-				+0.7
1,467,037	-				+0.4
1,467,037	-				+0.2
1,467,040	+				-1.9
1,467,041	-				-0.6
1,467,041	-				+0.7
1,467,041	-				+2.2
1,467,041	-				+0.7
1,467,041	-				-1.4
1,467,041	-				-0.7
1,467,041	-				+0.2
1,467,041	-				+2.0
1,467,041	-				+0.4
1,467,041	-				+0.0
1,467,041	-				-1.7
1,467,041	-				+0.1
1,467,041	-				-0.6
1,467,041	-				-0.5
1,467,041	-				-0.6
1,467,050	-				-0.0
1,467,055	+				-0.2
1,467,055	+				+0.1
1,467,055	+				-0.3
1,467,055	+				-0.3
1,467,055	+				-0.4
1,467,055	+				+0.8
1,467,055	+				+2.1
1,467,055	+				-1.4
1,467,055	+				-0.6
1,467,055	+				-0.0
1,467,055	+				+0.1
1,467,056	-				+1.4
1,467,056	-				+0.5
1,467,056	-				-0.4
1,467,056	-				+0.5
1,467,056	-				-2.6
1,467,056	-				-0.7
1,467,059	+				-0.3
1,467,059	+				+0.1
1,467,059	+				-0.4
1,467,068	+				-1.9
1,467,074	+				-2.6
1,467,074	+				+0.1
1,467,074	+				-1.4
1,467,074	+				+2.0
1,467,075	-				-0.6
1,467,075	-				-0.5
1,467,075	-				+0.5
1,467,075	-				+0.5
1,467,075	-				-2.2
1,467,075	-				+0.4
1,467,079	-				+0.4
1,467,079	-				+0.3
1,467,088	-				-1.6
1,467,088	-				-0.2
1,467,088	-				-0.9
1,467,088	-				+0.6
1,467,091	+				+0.2
1,467,091	+				-0.1
1,467,091	+				-0.7
1,467,091	+				+0.8
1,467,091	+				+1.1
1,467,091	+				-1.2
1,467,091	+				+0.1
1,467,091	+				+0.3
1,467,091	+				-0.0
1,467,091	+				-0.3
1,467,092	-				-0.1
1,467,092	-				-0.5
1,467,092	-				+2.2
1,467,092	-				-0.8
1,467,093	+				+0.9
1,467,093	+				-0.3
1,467,093	+				+0.5
1,467,093	+				-0.9
1,467,093	+				+0.8
1,467,093	+				+0.5
1,467,094	-				+0.8
1,467,094	-				+0.2
1,467,094	-				-0.9
1,467,094	-				+0.4
1,467,094	-				+0.0
1,467,094	-				+2.7
1,467,094	-				+0.5
1,467,094	-				+0.4
1,467,094	-				+0.3
1,467,097	+				-0.7
1,467,097	+				+0.1
1,467,097	+				-0.4
1,467,097	+				+0.3
1,467,097	+				-1.9
1,467,097	+				-0.3
1,467,098	-				+0.2
1,467,098	-				-0.4
1,467,098	-				+0.2
1,467,098	-				-1.4
1,467,098	-				+0.4
1,467,098	-				+0.6
1,467,098	-				+0.1
1,467,098	-				-1.6
1,467,135	+				-0.4
1,467,135	+				+2.8
1,467,136	-				+0.1
1,467,136	-				+1.5
1,467,145	-				-0.7
1,467,145	-				+0.4
1,467,145	-				+0.3
1,467,179	+				-0.8
1,467,179	+				-0.8
1,467,226	+				-0.1
1,467,226	+				-0.9
1,467,226	+				-1.0
1,467,226	+				-2.9
1,467,227	-				-0.3
1,467,227	-				+0.4
1,467,227	-				-0.2
1,467,227	-				+0.7
1,467,227	-				+0.4
1,467,227	-				+0.7
1,467,227	-				+0.4
1,467,227	-				-1.8
1,467,227	-				-0.3
1,467,236	-				+0.4
1,467,239	+				-0.1
1,467,239	+				+1.2
1,467,239	+				+1.2
1,467,239	+				+1.8
1,467,240	-				-0.6
1,467,240	-				-0.4
1,467,240	-				+0.4
1,467,240	-				+0.6
1,467,273	+				+1.4
1,467,274	-				-0.3
1,467,334	+		DZA65_RS07075	0.13	+0.1
1,467,335	-		DZA65_RS07075	0.13	+0.0
1,467,335	-		DZA65_RS07075	0.13	-1.3
1,467,336	+		DZA65_RS07075	0.13	+1.1
1,467,336	+		DZA65_RS07075	0.13	+1.4
1,467,336	+		DZA65_RS07075	0.13	-1.1
1,467,336	+		DZA65_RS07075	0.13	-0.3
1,467,336	+		DZA65_RS07075	0.13	+0.4
1,467,336	+		DZA65_RS07075	0.13	+0.4
1,467,336	+		DZA65_RS07075	0.13	-1.6
1,467,336	+		DZA65_RS07075	0.13	-0.3
1,467,336	+		DZA65_RS07075	0.13	+1.1
1,467,336	+		DZA65_RS07075	0.13	-0.9
1,467,336	+		DZA65_RS07075	0.13	-0.3
1,467,336	+		DZA65_RS07075	0.13	+0.4
1,467,336	+		DZA65_RS07075	0.13	+0.4
1,467,336	+		DZA65_RS07075	0.13	-0.1
1,467,336	+		DZA65_RS07075	0.13	+0.2
1,467,336	+		DZA65_RS07075	0.13	+0.0
1,467,336	+		DZA65_RS07075	0.13	-0.6
1,467,336	+		DZA65_RS07075	0.13	+2.4
1,467,336	+		DZA65_RS07075	0.13	-0.9
1,467,336	+		DZA65_RS07075	0.13	+0.7
1,467,336	+		DZA65_RS07075	0.13	+0.5
1,467,336	+		DZA65_RS07075	0.13	+0.3
1,467,336	+		DZA65_RS07075	0.13	+1.7
1,467,336	+		DZA65_RS07075	0.13	-0.2
1,467,337	-				-0.2
1,467,337	-		DZA65_RS07075	0.13	+2.0
1,467,337	-		DZA65_RS07075	0.13	+1.2
1,467,337	-		DZA65_RS07075	0.13	-0.3
1,467,337	-		DZA65_RS07075	0.13	+0.7
1,467,337	-		DZA65_RS07075	0.13	+2.0
1,467,337	-		DZA65_RS07075	0.13	-0.6
1,467,337	-		DZA65_RS07075	0.13	+0.2
1,467,337	-		DZA65_RS07075	0.13	-0.5
1,467,337	-		DZA65_RS07075	0.13	-0.0
1,467,337	-		DZA65_RS07075	0.13	-1.3
1,467,337	-		DZA65_RS07075	0.13	+0.4
1,467,337	-		DZA65_RS07075	0.13	-2.8
1,467,344	+		DZA65_RS07075	0.13	+0.7
1,467,345	-		DZA65_RS07075	0.13	-1.8
1,467,345	-		DZA65_RS07075	0.13	+0.9
1,467,345	-		DZA65_RS07075	0.13	+0.6
1,467,345	-		DZA65_RS07075	0.13	+1.0
1,467,363	+		DZA65_RS07075	0.14	+1.1
1,467,512	+		DZA65_RS07075	0.24	-0.1
1,467,618	-		DZA65_RS07075	0.30	+0.8
1,467,979	+		DZA65_RS07075	0.53	+1.5
1,467,980	-		DZA65_RS07075	0.53	+1.7
1,467,990	-		DZA65_RS07075	0.54	+0.9
1,467,990	-		DZA65_RS07075	0.54	+0.8
1,468,080	+				+2.4
1,468,080	+		DZA65_RS07075	0.59	-1.6
1,468,081	-		DZA65_RS07075	0.60	-0.2
1,468,086	+		DZA65_RS07075	0.60	-0.6
1,468,086	+		DZA65_RS07075	0.60	+0.7
1,468,115	-		DZA65_RS07075	0.62	-0.0
1,468,115	-		DZA65_RS07075	0.62	-0.7
1,468,238	-		DZA65_RS07075	0.69	-0.7
1,468,451	+		DZA65_RS07075	0.83	+2.0
1,468,456	+		DZA65_RS07075	0.83	+0.4
1,468,456	+		DZA65_RS07075	0.83	+0.4
1,468,456	+		DZA65_RS07075	0.83	+0.4
1,468,457	-		DZA65_RS07075	0.83	-0.1
1,468,457	-		DZA65_RS07075	0.83	+0.4
1,468,544	+		DZA65_RS07075	0.89	+0.4
1,468,610	+				-0.7
1,468,633	+				-0.6
1,468,724	-				+0.4
1,468,757	+				+1.7
1,468,758	-				-0.8
1,468,765	+				+0.7
1,468,765	+				+0.4
1,468,765	+				+0.6
1,468,796	-				-0.3
1,468,971	+				+0.1
1,468,971	+				+1.5
1,468,972	-				+0.4
1,468,973	+				+0.3
1,468,973	+				+1.5
1,468,974	-				-0.9
1,469,004	-				+0.4
1,469,260	+				-0.2
1,469,319	+				+1.4
1,469,337	+				+1.5
1,469,378	+				-0.4
1,469,382	+				-0.9
1,469,382	+				-0.0
1,469,382	+				-0.9
1,469,383	-				+0.4
1,469,383	-				+0.0
1,469,383	-				+0.5
1,469,403	+				-1.6
1,469,574	-				-0.2
1,469,607	+				+1.0
1,469,608	-				+1.4
1,469,626	+		DZA65_RS22830	0.10	-0.3
1,469,676	-		DZA65_RS22830	0.36	+0.2
1,469,676	-		DZA65_RS22830	0.36	-0.9
1,469,704	+		DZA65_RS22830	0.51	-1.0
1,469,716	+		DZA65_RS22830	0.57	+0.0
1,469,716	+				-0.6
1,469,717	-		DZA65_RS22830	0.58	-1.0
1,469,717	-		DZA65_RS22830	0.58	-1.0
1,469,717	-		DZA65_RS22830	0.58	-1.6
1,469,717	-		DZA65_RS22830	0.58	-2.6
1,469,718	+		DZA65_RS22830	0.58	-0.1
1,469,718	+		DZA65_RS22830	0.58	-0.0
1,469,719	-		DZA65_RS22830	0.59	+0.1
1,469,719	-		DZA65_RS22830	0.59	+0.3
1,469,719	-		DZA65_RS22830	0.59	-0.6
1,469,719	-		DZA65_RS22830	0.59	-1.1