Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07060

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,462,794	-				-0.0
1,462,794	-		DZA65_RS07055	0.40	+0.4
1,462,794	-		DZA65_RS07055	0.40	+0.2
1,462,931	-		DZA65_RS07055	0.52	-1.4
1,462,931	-		DZA65_RS07055	0.52	-2.9
1,462,984	+		DZA65_RS07055	0.57	+0.4
1,462,985	-		DZA65_RS07055	0.57	+0.9
1,463,006	+		DZA65_RS07055	0.59	-0.6
1,463,006	+		DZA65_RS07055	0.59	+0.4
1,463,007	-		DZA65_RS07055	0.59	+1.8
1,463,007	-		DZA65_RS07055	0.59	-0.1
1,463,197	+		DZA65_RS07055	0.76	+2.2
1,463,197	+				+1.4
1,463,197	+		DZA65_RS07055	0.76	-1.2
1,463,197	+				+2.7
1,463,198	-		DZA65_RS07055	0.76	-0.2
1,463,198	-		DZA65_RS07055	0.76	-0.0
1,463,198	-		DZA65_RS07055	0.76	+1.4
1,463,198	-				+1.4
1,463,414	+				-0.9
1,463,414	+				-0.1
1,463,414	+				+1.4
1,463,414	+				-0.7
1,463,445	+				+0.4
1,463,446	-				+1.1
1,463,446	-				+0.6
1,463,547	+				-0.1
1,463,547	+				+1.5
1,463,548	-				-2.2
1,463,569	-				-0.4
1,463,571	+				-0.1
1,463,589	+				+0.2
1,463,589	+				-0.5
1,463,589	+				-0.2
1,463,590	-				+1.4
1,463,597	+				-1.7
1,463,597	+				+0.4
1,463,599	+				+0.4
1,463,599	+				-0.2
1,463,599	+				-0.1
1,463,599	+				+0.4
1,463,599	+				-0.8
1,463,600	-				-1.6
1,463,600	-				-0.6
1,463,600	-				+1.2
1,463,600	-				-1.3
1,463,600	-				-0.2
1,463,600	-				+0.7
1,463,706	+				+0.7
1,463,706	+				+0.6
1,463,706	+				+0.2
1,463,707	-				+0.4
1,463,707	-				-0.4
1,463,707	-				-0.2
1,463,707	-				-1.4
1,463,720	+				-1.4
1,463,720	+				+0.6
1,463,721	-				+0.7
1,463,729	+				+0.2
1,463,742	-				+0.4
1,463,756	+				+1.2
1,463,756	+				-0.6
1,463,757	-				-1.2
1,463,757	-				-0.1
1,463,757	-				+1.1
1,463,757	-				+0.5
1,463,817	-		DZA65_RS07060	0.11	+1.8
1,463,817	-		DZA65_RS07060	0.11	+2.4
1,463,817	-		DZA65_RS07060	0.11	+0.9
1,463,832	+		DZA65_RS07060	0.13	+1.7
1,463,833	-		DZA65_RS07060	0.13	-0.5
1,463,892	+		DZA65_RS07060	0.22	-0.4
1,463,892	+		DZA65_RS07060	0.22	+1.7
1,463,892	+		DZA65_RS07060	0.22	+0.1
1,463,893	-		DZA65_RS07060	0.23	-2.6
1,463,893	-		DZA65_RS07060	0.23	+0.6
1,463,893	-		DZA65_RS07060	0.23	+0.4
1,463,893	-		DZA65_RS07060	0.23	+0.3
1,463,893	-		DZA65_RS07060	0.23	+0.8
1,463,893	-		DZA65_RS07060	0.23	+0.9
1,463,893	-		DZA65_RS07060	0.23	-0.6
1,463,893	-		DZA65_RS07060	0.23	-0.2
1,463,893	-		DZA65_RS07060	0.23	+0.7
1,463,895	+		DZA65_RS07060	0.23	-0.6
1,463,895	+		DZA65_RS07060	0.23	+0.3
1,463,895	+		DZA65_RS07060	0.23	+0.3
1,463,895	+		DZA65_RS07060	0.23	+0.2
1,463,895	+		DZA65_RS07060	0.23	+0.4
1,463,895	+		DZA65_RS07060	0.23	-1.2
1,463,895	+		DZA65_RS07060	0.23	+0.1
1,463,896	-		DZA65_RS07060	0.23	-1.2
1,463,896	-		DZA65_RS07060	0.23	-1.3
1,463,896	-		DZA65_RS07060	0.23	-2.8
1,463,896	-		DZA65_RS07060	0.23	+1.0
1,463,896	-		DZA65_RS07060	0.23	-1.4
1,463,943	+		DZA65_RS07060	0.30	+0.0
1,463,943	+		DZA65_RS07060	0.30	+0.8
1,463,943	+		DZA65_RS07060	0.30	+0.8
1,463,943	+		DZA65_RS07060	0.30	-0.3
1,463,944	-		DZA65_RS07060	0.31	+0.3
1,463,944	-		DZA65_RS07060	0.31	-0.1
1,463,944	-		DZA65_RS07060	0.31	+0.6
1,463,944	-		DZA65_RS07060	0.31	+0.6
1,464,031	-		DZA65_RS07060	0.44	+1.1
1,464,031	-		DZA65_RS07060	0.44	+0.1
1,464,031	-		DZA65_RS07060	0.44	-0.4
1,464,036	+		DZA65_RS07060	0.45	-1.1
1,464,036	+		DZA65_RS07060	0.45	-0.3
1,464,036	+		DZA65_RS07060	0.45	-1.2
1,464,036	+		DZA65_RS07060	0.45	+0.4
1,464,036	+		DZA65_RS07060	0.45	+0.8
1,464,036	+		DZA65_RS07060	0.45	-0.6
1,464,037	-		DZA65_RS07060	0.45	-0.4
1,464,037	-		DZA65_RS07060	0.45	-0.8
1,464,037	-		DZA65_RS07060	0.45	-0.9
1,464,037	-		DZA65_RS07060	0.45	+0.0
1,464,037	-		DZA65_RS07060	0.45	+0.0
1,464,037	-		DZA65_RS07060	0.45	+0.4
1,464,037	-		DZA65_RS07060	0.45	-0.7
1,464,037	-		DZA65_RS07060	0.45	+2.0
1,464,037	-		DZA65_RS07060	0.45	+0.8
1,464,037	-		DZA65_RS07060	0.45	+0.1
1,464,037	-		DZA65_RS07060	0.45	-0.1
1,464,037	-		DZA65_RS07060	0.45	+0.8
1,464,037	-		DZA65_RS07060	0.45	+0.6
1,464,037	-		DZA65_RS07060	0.45	+0.1
1,464,067	+		DZA65_RS07060	0.50	+1.4
1,464,067	+		DZA65_RS07060	0.50	+0.4
1,464,068	-		DZA65_RS07060	0.50	+1.3
1,464,068	-		DZA65_RS07060	0.50	+0.1
1,464,068	-		DZA65_RS07060	0.50	+0.5
1,464,092	+		DZA65_RS07060	0.54	-0.3
1,464,093	-		DZA65_RS07060	0.54	-0.1
1,464,153	-		DZA65_RS07060	0.63	-2.6
1,464,153	-		DZA65_RS07060	0.63	+0.2
1,464,176	+		DZA65_RS07060	0.67	+1.0
1,464,176	+		DZA65_RS07060	0.67	-0.6
1,464,303	+		DZA65_RS07060	0.86	+0.9
1,464,304	-		DZA65_RS07060	0.87	-0.2
1,464,304	-		DZA65_RS07060	0.87	-0.0
1,464,311	+		DZA65_RS07060	0.88	+1.4
1,464,353	+				-0.2
1,464,388	-				+1.4
1,464,394	+				-0.3
1,464,394	+				-1.6
1,464,395	-				-0.0
1,464,433	+				-0.5
1,464,433	+				+1.2
1,464,434	-				+0.7
1,464,434	-				+0.8
1,464,434	-				+0.2
1,464,434	-				-1.8
1,464,434	-				+0.8
1,464,434	-				-2.0
1,464,434	-				-1.0
1,464,548	-				+0.7
1,464,623	-		DZA65_RS07065	0.23	-0.3
1,464,623	-		DZA65_RS07065	0.23	-0.4
1,464,623	-		DZA65_RS07065	0.23	+0.4
1,464,909	-		DZA65_RS07065	0.72	-2.3
1,464,909	-		DZA65_RS07065	0.72	+1.2
1,465,001	+		DZA65_RS07065	0.88	+0.9
1,465,001	+		DZA65_RS07065	0.88	-0.2
1,465,001	+		DZA65_RS07065	0.88	-1.3
1,465,001	+		DZA65_RS07065	0.88	+0.7
1,465,001	+		DZA65_RS07065	0.88	+0.3
1,465,002	-		DZA65_RS07065	0.88	-0.6
1,465,002	-		DZA65_RS07065	0.88	+0.1
1,465,002	-		DZA65_RS07065	0.88	-0.6
1,465,026	-				-1.6
1,465,026	-				+0.3
1,465,026	-				+0.2
1,465,070	+				+0.8
1,465,070	+				+0.9
1,465,070	+				-2.1
1,465,070	+				+1.6
1,465,071	-				+0.9
1,465,071	-				+1.4
1,465,071	-				-0.5
1,465,071	-				+0.7
1,465,204	+				+0.2
1,465,204	+				-0.1
1,465,204	+				+1.4
1,465,204	+				+1.4
1,465,204	+				+0.9
1,465,204	+				+1.1
1,465,204	+				-1.3
1,465,204	+				+1.0
1,465,204	+				+1.3
1,465,204	+				+1.5
1,465,204	+				-0.2
1,465,205	-				+0.9
1,465,205	-				+0.9
1,465,205	-				+1.4
1,465,205	-				-0.0
1,465,205	-				+1.2
1,465,205	-				+0.8
1,465,205	-				-0.2
1,465,205	-				+1.4
1,465,205	-				+0.2
1,465,205	-				+0.7
1,465,205	-				+0.9
1,465,205	-				+1.0
1,465,205	-				+1.2
1,465,205	-				-0.6
1,465,205	-				-0.2
1,465,205	-				+0.9
1,465,205	-				+0.0
1,465,205	-				+0.3
1,465,205	-				+1.5
1,465,205	-				+0.9
1,465,205	-				+0.4
1,465,205	-				-0.1
1,465,205	-				+0.0
1,465,205	-				+1.3
1,465,205	-				-0.5
1,465,206	+				+1.2
1,465,206	+				+2.6
1,465,206	+				-0.2
1,465,206	+				+0.1
1,465,207	-				-0.6
1,465,207	-				+0.7
1,465,207	-				-0.1
1,465,207	-				-2.2
1,465,207	-				+0.5
1,465,207	-				+1.1
1,465,207	-				-0.0
1,465,207	-				+0.8
1,465,356	+		DZA65_RS07070	0.14	+1.4
1,465,357	-		DZA65_RS07070	0.14	-0.9