Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06775

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,406,333	+		DZA65_RS06770	0.58	-0.5
1,406,334	-		DZA65_RS06770	0.58	+0.8
1,406,334	-		DZA65_RS06770	0.58	-0.8
1,406,334	-		DZA65_RS06770	0.58	-1.6
1,406,511	+		DZA65_RS06770	0.67	+0.5
1,406,512	-		DZA65_RS06770	0.67	+0.1
1,406,512	-		DZA65_RS06770	0.67	-0.2
1,406,512	-		DZA65_RS06770	0.67	+0.0
1,406,512	-		DZA65_RS06770	0.67	-0.0
1,406,622	-		DZA65_RS06770	0.72	+0.6
1,406,991	+				-2.2
1,406,991	+				+2.3
1,406,992	-				-0.8
1,406,992	-				+1.1
1,406,992	-				+0.4
1,407,050	+				+0.0
1,407,074	+				+1.4
1,407,075	-				-0.4
1,407,076	+				-1.3
1,407,076	+				-1.8
1,407,076	+				-0.1
1,407,076	+				-0.2
1,407,076	+				+0.1
1,407,076	+				-1.0
1,407,076	+				-2.2
1,407,076	+				+0.2
1,407,076	+				+1.0
1,407,076	+				-0.3
1,407,076	+				+1.1
1,407,076	+				+1.5
1,407,076	+				-2.2
1,407,077	-				-1.2
1,407,077	-				-0.1
1,407,077	-				-0.4
1,407,077	-				+0.1
1,407,077	-				-1.9
1,407,077	-				-0.6
1,407,077	-				+1.4
1,407,077	-				-1.2
1,407,077	-				-1.6
1,407,130	-				+0.4
1,407,150	-				+2.3
1,407,230	+				-1.7
1,407,230	+				-0.1
1,407,230	+				+0.8
1,407,230	+				+0.6
1,407,230	+				+0.1
1,407,231	-				+0.1
1,407,231	-				+1.0
1,407,268	+				+0.7
1,407,269	-				+1.3
1,407,457	-		DZA65_RS06775	0.15	-1.4
1,407,457	-		DZA65_RS06775	0.15	-0.0
1,407,457	-		DZA65_RS06775	0.15	+0.4
1,407,457	-		DZA65_RS06775	0.15	-0.8
1,407,519	+		DZA65_RS06775	0.18	+0.7
1,407,525	+		DZA65_RS06775	0.19	+0.2
1,407,525	+		DZA65_RS06775	0.19	+0.4
1,407,526	-		DZA65_RS06775	0.19	+0.2
1,407,526	-		DZA65_RS06775	0.19	-1.9
1,407,526	-		DZA65_RS06775	0.19	-0.8
1,407,526	-		DZA65_RS06775	0.19	-0.0
1,407,687	+		DZA65_RS06775	0.28	-1.3
1,407,687	+		DZA65_RS06775	0.28	-0.0
1,407,688	-		DZA65_RS06775	0.28	-1.8
1,407,688	-		DZA65_RS06775	0.28	-1.2
1,407,688	-		DZA65_RS06775	0.28	+0.3
1,407,721	+		DZA65_RS06775	0.30	+0.0
1,407,756	+		DZA65_RS06775	0.32	-0.6
1,407,757	-		DZA65_RS06775	0.33	+1.8
1,407,771	-		DZA65_RS06775	0.33	-0.4
1,407,771	-		DZA65_RS06775	0.33	+0.0
1,407,771	-		DZA65_RS06775	0.33	-1.4
1,407,827	+		DZA65_RS06775	0.37	-0.6
1,407,912	-		DZA65_RS06775	0.42	-0.6
1,407,912	-		DZA65_RS06775	0.42	-0.3
1,407,999	+		DZA65_RS06775	0.47	-0.0
1,407,999	+		DZA65_RS06775	0.47	+0.1
1,407,999	+		DZA65_RS06775	0.47	+0.8
1,408,055	-		DZA65_RS06775	0.50	+1.5
1,408,093	+		DZA65_RS06775	0.52	-1.0
1,408,093	+		DZA65_RS06775	0.52	-2.4
1,408,094	-		DZA65_RS06775	0.52	-0.2
1,408,094	-		DZA65_RS06775	0.52	-0.3
1,408,094	-		DZA65_RS06775	0.52	+1.5
1,408,223	-		DZA65_RS06775	0.60	-0.2
1,408,288	+		DZA65_RS06775	0.64	-0.3
1,408,289	-		DZA65_RS06775	0.64	-0.0
1,408,289	-		DZA65_RS06775	0.64	-1.2
1,408,289	-		DZA65_RS06775	0.64	-0.9
1,408,371	+		DZA65_RS06775	0.69	-1.2
1,408,371	+		DZA65_RS06775	0.69	-0.6
1,408,409	+		DZA65_RS06775	0.71	-0.3
1,408,409	+		DZA65_RS06775	0.71	-1.0
1,408,409	+		DZA65_RS06775	0.71	+0.6
1,408,409	+		DZA65_RS06775	0.71	+0.4
1,408,409	+		DZA65_RS06775	0.71	-0.1
1,408,410	-		DZA65_RS06775	0.71	-0.4
1,408,410	-		DZA65_RS06775	0.71	+0.1
1,408,521	+		DZA65_RS06775	0.78	+0.1
1,408,521	+		DZA65_RS06775	0.78	+0.7
1,408,521	+		DZA65_RS06775	0.78	-1.2
1,408,521	+		DZA65_RS06775	0.78	-0.3
1,408,521	+		DZA65_RS06775	0.78	-1.7
1,408,521	+		DZA65_RS06775	0.78	-0.9
1,408,522	-		DZA65_RS06775	0.78	-1.3
1,408,522	-		DZA65_RS06775	0.78	+0.3
1,408,545	+		DZA65_RS06775	0.79	+1.7
1,408,545	+		DZA65_RS06775	0.79	-0.2
1,408,545	+		DZA65_RS06775	0.79	-0.4
1,408,546	-		DZA65_RS06775	0.79	-1.3
1,408,546	-		DZA65_RS06775	0.79	+1.6
1,408,713	+		DZA65_RS06775	0.89	-0.7
1,408,713	+		DZA65_RS06775	0.89	+0.7
1,408,713	+		DZA65_RS06775	0.89	-0.3
1,408,714	-		DZA65_RS06775	0.89	+0.4
1,408,922	+		DZA65_RS06780	0.31	-0.0
1,408,922	+		DZA65_RS06780	0.31	-0.9
1,408,923	-		DZA65_RS06780	0.32	-0.7
1,408,923	-				-1.2
1,408,931	+		DZA65_RS06780	0.41	+1.3
1,408,931	+		DZA65_RS06780	0.41	-0.2
1,408,942	+		DZA65_RS06780	0.53	-0.1
1,408,942	+		DZA65_RS06780	0.53	+0.7
1,408,942	+		DZA65_RS06780	0.53	-1.0
1,408,943	-		DZA65_RS06780	0.54	+0.6
1,408,957	-		DZA65_RS06780	0.70	-0.6
1,409,011	+				-0.3
1,409,011	+				+0.1
1,409,011	+				-0.2
1,409,011	+				-0.5
1,409,011	+				-0.4
1,409,011	+				+0.8
1,409,011	+				-1.2
1,409,011	+				-0.5
1,409,011	+				+1.2
1,409,011	+				+0.3
1,409,011	+				-0.2
1,409,011	+				-1.1
1,409,011	+				+0.4
1,409,011	+				+0.2
1,409,011	+				-0.6
1,409,012	-				+0.1
1,409,012	-				-0.9
1,409,012	-				-0.8
1,409,012	-				+0.4
1,409,012	-				-1.2
1,409,012	-				+0.6
1,409,012	-				+1.3
1,409,012	-				-0.7
1,409,163	+				+2.0
1,409,181	+				+0.8
1,409,181	+				-0.7
1,409,182	-				+0.7
1,409,182	-				-1.5
1,409,182	-				+0.0
1,409,182	-				-0.0
1,409,182	-				+0.5
1,409,261	+				-0.4
1,409,271	+				-0.1
1,409,294	-				-0.8
1,409,304	+				+0.4
1,409,405	+				-0.0
1,409,405	+				+1.4
1,409,405	+				-0.4
1,409,406	-				+0.1
1,409,406	-				+0.3
1,409,406	-				-0.8
1,409,415	+				+0.2
1,409,415	+				+0.3
1,409,415	+				-0.0
1,409,415	+				-0.1
1,409,415	+				+0.4
1,409,415	+				+1.0
1,409,415	+				-0.6
1,409,415	+				-0.4
1,409,415	+				+0.4
1,409,415	+				+0.9
1,409,415	+				+1.5
1,409,415	+				+1.7
1,409,415	+				-0.1
1,409,416	-				-0.1
1,409,416	-				+2.0
1,409,416	-				-1.3
1,409,416	-				-0.8
1,409,416	-				+0.4
1,409,416	-				-1.7
1,409,416	-				-0.9
1,409,416	-				+1.0
1,409,416	-				-0.0
1,409,416	-				-2.6
1,409,416	-				+0.5
1,409,416	-				+0.6
1,409,416	-				-1.1
1,409,416	-				-0.6
1,409,416	-				-0.2
1,409,416	-				-0.1
1,409,424	+				-0.6
1,409,425	-				-0.6
1,409,425	-				+0.8
1,409,523	+				+0.8
1,409,523	+		DZA65_RS06785	0.57	-0.7
1,409,523	+		DZA65_RS06785	0.57	-0.9
1,409,523	+		DZA65_RS06785	0.57	-1.2
1,409,524	-		DZA65_RS06785	0.57	+0.2
1,409,524	-		DZA65_RS06785	0.57	-1.2
1,409,524	-		DZA65_RS06785	0.57	-0.2
1,409,529	+		DZA65_RS06785	0.59	-1.8
1,409,529	+		DZA65_RS06785	0.59	-0.5
1,409,530	-		DZA65_RS06785	0.60	-0.1
1,409,530	-		DZA65_RS06785	0.60	-1.0
1,409,530	-		DZA65_RS06785	0.60	-0.6
1,409,530	-		DZA65_RS06785	0.60	+0.3
1,409,530	-		DZA65_RS06785	0.60	-0.3
1,409,549	+		DZA65_RS06785	0.69	-0.6
1,409,601	+				-1.9
1,409,735	+				+1.2
1,409,735	+				+0.9
1,409,736	-				-0.2
1,409,736	-				-1.6
1,409,747	+				+0.4
1,409,748	-				+0.4
1,409,748	-				-0.9
1,409,748	-				-0.5
1,409,748	-				+0.2
1,409,788	+				+0.2
1,409,788	+				+0.0
1,409,788	+				+0.5
1,409,789	-				+1.0
1,409,789	-				+0.8
1,409,789	-				+0.4
1,409,789	-				-1.2
1,409,789	-				-0.6
1,409,793	+				-1.1
1,409,793	+				+0.4
1,409,793	+				-1.2
1,409,794	-				-0.3
1,409,794	-				+0.4
1,409,802	-				-0.2
1,409,802	-				+0.2
1,409,815	-				-1.9
1,409,826	+				-0.0