Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06750

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,399,589	-		DZA65_RS06745	0.46	-2.1
1,399,688	+		DZA65_RS06745	0.52	-2.3
1,399,756	+		DZA65_RS06745	0.56	-1.2
1,399,757	-		DZA65_RS06745	0.56	-1.9
1,399,807	+				-0.0
1,399,807	+		DZA65_RS06745	0.59	-0.4
1,399,808	-		DZA65_RS06745	0.59	-1.7
1,399,808	-		DZA65_RS06745	0.59	-0.4
1,399,808	-		DZA65_RS06745	0.59	+1.0
1,399,808	-		DZA65_RS06745	0.59	-2.2
1,399,828	+		DZA65_RS06745	0.60	-3.1
1,399,828	+		DZA65_RS06745	0.60	-0.7
1,399,828	+		DZA65_RS06745	0.60	-1.9
1,399,828	+		DZA65_RS06745	0.60	-1.1
1,399,829	-		DZA65_RS06745	0.60	-1.2
1,399,829	-		DZA65_RS06745	0.60	-1.8
1,399,930	-		DZA65_RS06745	0.66	-1.6
1,399,991	+		DZA65_RS06745	0.70	-1.6
1,399,991	+		DZA65_RS06745	0.70	-0.5
1,399,992	-				+0.4
1,400,134	+		DZA65_RS06745	0.79	-1.2
1,400,134	+		DZA65_RS06745	0.79	-1.2
1,400,134	+		DZA65_RS06745	0.79	-2.3
1,400,134	+		DZA65_RS06745	0.79	-1.6
1,400,134	+		DZA65_RS06745	0.79	-0.1
1,400,134	+		DZA65_RS06745	0.79	-2.0
1,400,135	-		DZA65_RS06745	0.79	-2.1
1,400,135	-		DZA65_RS06745	0.79	-0.4
1,400,135	-		DZA65_RS06745	0.79	-2.4
1,400,170	+		DZA65_RS06745	0.81	-1.3
1,400,170	+		DZA65_RS06745	0.81	-1.2
1,400,170	+		DZA65_RS06745	0.81	-0.1
1,400,171	-		DZA65_RS06745	0.81	-0.8
1,400,250	+		DZA65_RS06745	0.86	-0.3
1,400,251	-		DZA65_RS06745	0.86	-0.6
1,400,380	+				-0.9
1,400,380	+				-0.6
1,400,380	+				-1.0
1,400,380	+				-2.2
1,400,380	+				-2.4
1,400,380	+				+0.4
1,400,380	+				-2.4
1,400,380	+				+0.4
1,400,380	+				-1.3
1,400,380	+				-1.1
1,400,380	+				-2.2
1,400,381	-				+0.8
1,400,381	-				-1.8
1,400,381	-				-0.5
1,400,381	-				-1.1
1,400,381	-				-1.9
1,400,381	-				-0.3
1,400,381	-				-1.6
1,400,389	+				-3.7
1,400,389	+				-1.6
1,400,389	+				-2.4
1,400,390	-				-0.3
1,400,390	-				-2.2
1,400,480	-				+0.0
1,400,480	-				-1.1
1,400,539	+				-2.8
1,400,539	+				-0.9
1,400,539	+				-1.8
1,400,540	-				+0.9
1,400,560	+				+0.3
1,400,560	+				+0.4
1,400,561	-				+0.7
1,400,670	+		DZA65_RS06750	0.27	+1.2
1,400,670	+		DZA65_RS06750	0.27	+1.5
1,400,671	-		DZA65_RS06750	0.27	+0.6
1,400,726	+		DZA65_RS06750	0.40	+0.8
1,400,797	+		DZA65_RS06750	0.57	-1.5
1,400,797	+		DZA65_RS06750	0.57	-0.6
1,400,798	-		DZA65_RS06750	0.57	+0.4
1,400,963	+				+2.2
1,400,963	+				-0.1
1,400,964	-				+0.4
1,400,968	+				-0.7
1,400,969	-				-0.9
1,400,976	+				+0.4
1,400,976	+				-0.2
1,400,977	-				+0.0
1,400,977	-				-0.6
1,400,977	-				+1.4
1,400,977	-				-0.3
1,400,977	-				+1.2
1,400,987	-				-0.3
1,401,017	-				+0.4
1,401,055	+				-0.1
1,401,056	-				+0.1
1,401,069	+				+0.2
1,401,076	+				+0.4
1,401,077	-				-0.6
1,401,077	-				-0.5
1,401,162	+		DZA65_RS06755	0.14	+1.0
1,401,162	+		DZA65_RS06755	0.14	-1.9
1,401,162	+		DZA65_RS06755	0.14	+2.0
1,401,162	+		DZA65_RS06755	0.14	-0.6
1,401,163	-		DZA65_RS06755	0.14	+0.2
1,401,163	-		DZA65_RS06755	0.14	-0.4
1,401,163	-		DZA65_RS06755	0.14	-0.6
1,401,163	-		DZA65_RS06755	0.14	+0.6
1,401,163	-		DZA65_RS06755	0.14	+0.7
1,401,163	-		DZA65_RS06755	0.14	-2.2
1,401,174	+		DZA65_RS06755	0.15	+0.4
1,401,174	+		DZA65_RS06755	0.15	+0.7
1,401,174	+		DZA65_RS06755	0.15	-0.5
1,401,175	-		DZA65_RS06755	0.16	-0.7
1,401,175	-		DZA65_RS06755	0.16	+0.1
1,401,175	-		DZA65_RS06755	0.16	-0.9
1,401,236	+		DZA65_RS06755	0.24	+1.1
1,401,236	+				+1.0
1,401,358	+		DZA65_RS06755	0.42	-1.3
1,401,358	+		DZA65_RS06755	0.42	-0.8
1,401,453	+		DZA65_RS06755	0.56	+0.7
1,401,453	+		DZA65_RS06755	0.56	+0.9
1,401,454	-		DZA65_RS06755	0.56	-0.9
1,401,454	-		DZA65_RS06755	0.56	-0.3
1,401,454	-		DZA65_RS06755	0.56	-0.3
1,401,454	-		DZA65_RS06755	0.56	+0.7
1,401,454	-		DZA65_RS06755	0.56	-0.5
1,401,482	+		DZA65_RS06755	0.60	+0.1
1,401,482	+		DZA65_RS06755	0.60	-1.3
1,401,482	+		DZA65_RS06755	0.60	-0.3
1,401,482	+		DZA65_RS06755	0.60	+0.5
1,401,482	+		DZA65_RS06755	0.60	-1.4
1,401,482	+		DZA65_RS06755	0.60	+1.1
1,401,483	-		DZA65_RS06755	0.60	-0.6
1,401,483	-		DZA65_RS06755	0.60	+1.1
1,401,558	+		DZA65_RS06755	0.71	-0.3
1,401,558	+		DZA65_RS06755	0.71	+0.4
1,401,558	+		DZA65_RS06755	0.71	+1.9
1,401,558	+		DZA65_RS06755	0.71	+0.4
1,401,558	+		DZA65_RS06755	0.71	-1.0
1,401,558	+		DZA65_RS06755	0.71	+0.3
1,401,558	+		DZA65_RS06755	0.71	+0.8
1,401,558	+		DZA65_RS06755	0.71	+0.3
1,401,558	+		DZA65_RS06755	0.71	-1.6
1,401,558	+		DZA65_RS06755	0.71	+0.4
1,401,559	-		DZA65_RS06755	0.71	+1.3
1,401,559	-		DZA65_RS06755	0.71	-1.2
1,401,559	-		DZA65_RS06755	0.71	+0.1
1,401,559	-		DZA65_RS06755	0.71	+0.5
1,401,559	-		DZA65_RS06755	0.71	-1.5
1,401,559	-		DZA65_RS06755	0.71	+1.4
1,401,598	+		DZA65_RS06755	0.77	+2.0
1,401,598	+		DZA65_RS06755	0.77	-0.9
1,401,662	+		DZA65_RS06755	0.86	-1.6
1,401,662	+		DZA65_RS06755	0.86	-1.5
1,401,662	+		DZA65_RS06755	0.86	+0.2
1,401,662	+		DZA65_RS06755	0.86	+1.0
1,401,662	+		DZA65_RS06755	0.86	-2.4
1,401,663	-		DZA65_RS06755	0.86	+1.1
1,401,663	-		DZA65_RS06755	0.86	+0.7
1,401,663	-		DZA65_RS06755	0.86	-0.3
1,401,663	-		DZA65_RS06755	0.86	-1.1
1,401,747	-				-0.6
1,401,747	-				-0.2