Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06210

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,285,057	+		DZA65_RS06205	0.57	+0.0
1,285,057	+		DZA65_RS06205	0.57	-0.1
1,285,057	+		DZA65_RS06205	0.57	+0.6
1,285,057	+		DZA65_RS06205	0.57	+1.9
1,285,058	-		DZA65_RS06205	0.57	-0.2
1,285,058	-		DZA65_RS06205	0.57	-0.6
1,285,141	-		DZA65_RS06205	0.63	-0.8
1,285,141	-		DZA65_RS06205	0.63	+0.5
1,285,175	-		DZA65_RS06205	0.65	+0.2
1,285,180	+		DZA65_RS06205	0.65	-0.1
1,285,192	+		DZA65_RS06205	0.66	-1.6
1,285,192	+		DZA65_RS06205	0.66	-1.8
1,285,192	+		DZA65_RS06205	0.66	-0.3
1,285,192	+		DZA65_RS06205	0.66	-0.3
1,285,193	-		DZA65_RS06205	0.66	+0.4
1,285,243	+		DZA65_RS06205	0.69	+1.0
1,285,244	-		DZA65_RS06205	0.69	+0.5
1,285,244	-				+2.0
1,285,383	+		DZA65_RS06205	0.78	-0.2
1,285,395	+		DZA65_RS06205	0.79	-0.6
1,285,396	-		DZA65_RS06205	0.79	-0.4
1,285,396	-		DZA65_RS06205	0.79	-1.0
1,285,420	+		DZA65_RS06205	0.80	-1.3
1,285,421	-		DZA65_RS06205	0.80	+0.1
1,285,421	-		DZA65_RS06205	0.80	-0.3
1,285,421	-		DZA65_RS06205	0.80	-0.3
1,285,421	-		DZA65_RS06205	0.80	-0.8
1,285,421	-		DZA65_RS06205	0.80	+1.1
1,285,421	-		DZA65_RS06205	0.80	+1.6
1,285,421	-		DZA65_RS06205	0.80	-1.9
1,285,480	-		DZA65_RS06205	0.84	-0.3
1,285,495	+		DZA65_RS06205	0.85	+0.2
1,285,495	+		DZA65_RS06205	0.85	+0.0
1,285,498	+		DZA65_RS06205	0.85	-1.3
1,285,499	-		DZA65_RS06205	0.85	-0.8
1,285,543	+		DZA65_RS06205	0.88	+0.2
1,285,543	+		DZA65_RS06205	0.88	+0.4
1,285,544	-		DZA65_RS06205	0.88	+0.4
1,285,547	+		DZA65_RS06205	0.88	-2.3
1,285,547	+		DZA65_RS06205	0.88	-0.3
1,285,547	+		DZA65_RS06205	0.88	-0.0
1,285,547	+		DZA65_RS06205	0.88	-0.5
1,285,547	+		DZA65_RS06205	0.88	-0.1
1,285,547	+		DZA65_RS06205	0.88	-0.8
1,285,547	+		DZA65_RS06205	0.88	-1.8
1,285,547	+		DZA65_RS06205	0.88	-0.2
1,285,547	+		DZA65_RS06205	0.88	-0.1
1,285,548	-		DZA65_RS06205	0.88	-2.6
1,285,548	-		DZA65_RS06205	0.88	-1.2
1,285,548	-		DZA65_RS06205	0.88	+0.8
1,285,548	-		DZA65_RS06205	0.88	+1.1
1,285,548	-		DZA65_RS06205	0.88	-0.3
1,285,548	-		DZA65_RS06205	0.88	-2.8
1,285,550	-		DZA65_RS06205	0.88	-0.1
1,285,594	+				+0.1
1,285,594	+				-0.6
1,285,595	-				-0.0
1,285,595	-				+1.0
1,285,641	+				-0.4
1,285,642	-				-1.0
1,285,642	-				-1.4
1,285,642	-				-3.3
1,285,673	+				+0.6
1,285,673	+				+0.4
1,285,678	+				+1.2
1,285,678	+				+0.2
1,285,678	+				+0.8
1,285,678	+				-0.6
1,285,679	-				-1.6
1,285,681	+				-0.2
1,285,726	+				+1.7
1,285,733	+				-1.6
1,285,734	-				-1.0
1,285,736	+				-0.2
1,285,739	+				-0.6
1,285,740	-				-0.4
1,285,740	-				-0.2
1,285,774	-				-0.8
1,285,789	+				-0.1
1,286,007	+				-0.6
1,286,014	-				-1.0
1,286,014	-				+0.4
1,286,022	-				-1.2
1,286,102	+				-0.9
1,286,102	+				-0.2
1,286,103	-				+0.5
1,286,103	-				+0.5
1,286,106	+				-0.2
1,286,106	+				+0.5
1,286,106	+				-0.3
1,286,106	+				-0.5
1,286,107	-				-0.5
1,286,154	-		DZA65_RS06210	0.11	+0.4
1,286,157	+		DZA65_RS06210	0.11	-1.4
1,286,157	+		DZA65_RS06210	0.11	-0.6
1,286,158	-		DZA65_RS06210	0.11	+0.4
1,286,158	-		DZA65_RS06210	0.11	-2.0
1,286,158	-		DZA65_RS06210	0.11	+1.1
1,286,158	-		DZA65_RS06210	0.11	+0.5
1,286,233	+		DZA65_RS06210	0.16	+0.0
1,286,233	+		DZA65_RS06210	0.16	-1.3
1,286,233	+		DZA65_RS06210	0.16	-0.4
1,286,233	+		DZA65_RS06210	0.16	-1.0
1,286,233	+		DZA65_RS06210	0.16	-2.0
1,286,234	-		DZA65_RS06210	0.16	-0.9
1,286,234	-		DZA65_RS06210	0.16	+0.0
1,286,234	-		DZA65_RS06210	0.16	+0.7
1,286,298	-		DZA65_RS06210	0.21	+0.2
1,286,323	+		DZA65_RS06210	0.23	-0.7
1,286,323	+		DZA65_RS06210	0.23	-0.4
1,286,340	+		DZA65_RS06210	0.24	-0.8
1,286,340	+		DZA65_RS06210	0.24	-0.5
1,286,341	-		DZA65_RS06210	0.24	+1.0
1,286,521	+		DZA65_RS06210	0.37	-1.5
1,286,521	+		DZA65_RS06210	0.37	-0.6
1,286,543	+				-0.4
1,286,543	+		DZA65_RS06210	0.39	-1.5
1,286,543	+		DZA65_RS06210	0.39	+0.0
1,286,544	-		DZA65_RS06210	0.39	+0.6
1,286,544	-		DZA65_RS06210	0.39	+0.4
1,286,568	+		DZA65_RS06210	0.41	-0.4
1,286,568	+		DZA65_RS06210	0.41	-0.6
1,286,569	-				-2.2
1,286,569	-		DZA65_RS06210	0.41	-2.4
1,286,599	+		DZA65_RS06210	0.43	+0.3
1,286,600	-		DZA65_RS06210	0.43	-0.3
1,286,631	+		DZA65_RS06210	0.45	+0.0
1,286,631	+		DZA65_RS06210	0.45	+1.2
1,286,631	+		DZA65_RS06210	0.45	-0.2
1,286,632	-		DZA65_RS06210	0.45	-2.0
1,286,632	-		DZA65_RS06210	0.45	+1.1
1,286,632	-		DZA65_RS06210	0.45	+1.6
1,286,632	-		DZA65_RS06210	0.45	-0.7
1,286,632	-		DZA65_RS06210	0.45	-1.4
1,286,635	-		DZA65_RS06210	0.46	-0.6
1,286,635	-		DZA65_RS06210	0.46	-0.4
1,286,658	+		DZA65_RS06210	0.47	-1.2
1,286,691	+		DZA65_RS06210	0.50	-1.0
1,286,700	+		DZA65_RS06210	0.50	-0.6
1,286,701	-		DZA65_RS06210	0.50	-1.2
1,286,783	+		DZA65_RS06210	0.56	-0.7
1,286,794	+		DZA65_RS06210	0.57	-1.0
1,286,794	+		DZA65_RS06210	0.57	-0.1
1,286,794	+		DZA65_RS06210	0.57	+1.0
1,286,794	+		DZA65_RS06210	0.57	-1.2
1,286,794	+		DZA65_RS06210	0.57	+0.6
1,286,794	+		DZA65_RS06210	0.57	+1.1
1,286,795	-		DZA65_RS06210	0.57	+0.7
1,286,795	-		DZA65_RS06210	0.57	+0.1
1,286,795	-		DZA65_RS06210	0.57	-1.0
1,286,795	-		DZA65_RS06210	0.57	-1.2
1,286,795	-		DZA65_RS06210	0.57	+0.7
1,286,795	-		DZA65_RS06210	0.57	+0.5
1,286,795	-		DZA65_RS06210	0.57	+0.4
1,286,795	-		DZA65_RS06210	0.57	+0.2
1,286,797	-		DZA65_RS06210	0.57	+0.2
1,286,866	-		DZA65_RS06210	0.62	+1.0
1,286,905	+		DZA65_RS06210	0.65	-0.7
1,286,905	+		DZA65_RS06210	0.65	-0.6
1,286,906	-		DZA65_RS06210	0.65	+1.4
1,286,962	+		DZA65_RS06210	0.69	-0.1
1,286,962	+		DZA65_RS06210	0.69	-0.1
1,286,962	+		DZA65_RS06210	0.69	+2.8
1,286,962	+		DZA65_RS06210	0.69	-0.2
1,286,963	-		DZA65_RS06210	0.70	+0.3
1,286,963	-		DZA65_RS06210	0.70	-0.3
1,286,963	-		DZA65_RS06210	0.70	-0.0
1,287,003	-		DZA65_RS06210	0.72	+1.0
1,287,016	+		DZA65_RS06210	0.73	-1.3
1,287,017	-		DZA65_RS06210	0.73	-0.2
1,287,036	-		DZA65_RS06210	0.75	+0.4
1,287,205	+		DZA65_RS06210	0.87	+0.2
1,287,210	+		DZA65_RS06210	0.87	-0.9
1,287,211	-		DZA65_RS06210	0.88	+0.4
1,287,522	+				-0.2
1,287,522	+				-1.4
1,287,523	-				+1.1
1,287,584	+		DZA65_RS06215	0.20	+1.0
1,287,585	-		DZA65_RS06215	0.21	-1.4
1,287,673	+		DZA65_RS06215	0.39	-0.3
1,287,845	+		DZA65_RS06215	0.75	-0.0
1,287,907	+		DZA65_RS06215	0.88	-1.0
1,287,907	+		DZA65_RS06215	0.88	+1.0
1,287,908	-		DZA65_RS06215	0.88	+1.5
1,287,908	-		DZA65_RS06215	0.88	-0.0
1,287,908	-		DZA65_RS06215	0.88	+0.4
1,287,908	-		DZA65_RS06215	0.88	-0.6
1,287,908	-		DZA65_RS06215	0.88	-1.2
1,287,908	-		DZA65_RS06215	0.88	+1.3
1,287,920	+				-0.1
1,287,920	+				+0.0
1,287,920	+				-0.4
1,287,952	-				-0.4
1,287,965	+				-0.0
1,287,965	+				-2.2
1,287,965	+				-1.4
1,287,965	+				+0.6
1,287,965	+				+0.7
1,287,966	-				-0.4
1,287,966	-				-0.8
1,287,966	-				+0.4
1,287,966	-				+1.0
1,287,966	-				-0.1
1,287,970	+				-0.0
1,287,970	+				-0.6
1,287,970	+				+0.6
1,287,970	+				-0.6
1,287,970	+				-1.2
1,287,971	-				-1.0
1,287,971	-				+0.4
1,287,971	-				-1.6
1,287,971	-				-1.4
1,287,971	-				-1.0
1,287,971	-				+1.4
1,287,971	-				+1.7
1,287,971	-				-0.4
1,287,971	-				-2.0
1,287,971	-				+0.0
1,287,971	-				+1.0
1,287,997	+				+0.2
1,288,007	+				-0.5
1,288,008	-				-0.5
1,288,008	-				+1.0
1,288,036	-				-0.8
1,288,037	+				+0.1
1,288,037	+				-0.6
1,288,037	+				+0.4
1,288,037	+				+0.4
1,288,037	+				-0.6
1,288,037	+				-1.1
1,288,038	-				+1.5
1,288,038	-				+1.5
1,288,038	-				-0.4
1,288,038	-				+0.4
1,288,061	+				-0.4
1,288,061	+				-0.1
1,288,061	+				+0.4
1,288,061	+				+0.4
1,288,062	-				-2.3
1,288,062	-				+0.6
1,288,062	-				-0.6
1,288,062	-				+1.4
1,288,062	-				+0.0
1,288,062	-				+0.2
1,288,062	-				-2.2
1,288,065	+		DZA65_RS06220	0.10	+1.6
1,288,065	+		DZA65_RS06220	0.10	-0.1
1,288,065	+		DZA65_RS06220	0.10	+1.1
1,288,065	+		DZA65_RS06220	0.10	-1.2
1,288,065	+		DZA65_RS06220	0.10	+0.8
1,288,065	+		DZA65_RS06220	0.10	-1.0
1,288,066	-		DZA65_RS06220	0.10	-0.6
1,288,066	-		DZA65_RS06220	0.10	-1.6
1,288,066	-		DZA65_RS06220	0.10	-0.6
1,288,066	-		DZA65_RS06220	0.10	+0.4
1,288,066	-		DZA65_RS06220	0.10	+1.0
1,288,066	-		DZA65_RS06220	0.10	-0.0
1,288,066	-				+0.4
1,288,066	-		DZA65_RS06220	0.10	-0.6
1,288,066	-		DZA65_RS06220	0.10	-0.1
1,288,066	-		DZA65_RS06220	0.10	+0.0
1,288,066	-		DZA65_RS06220	0.10	-0.1
1,288,153	+		DZA65_RS06220	0.21	-2.2
1,288,154	-		DZA65_RS06220	0.21	+0.5
1,288,154	-		DZA65_RS06220	0.21	-2.0
1,288,214	+		DZA65_RS06220	0.28	-0.4
1,288,231	+		DZA65_RS06220	0.31	+0.6
1,288,231	+		DZA65_RS06220	0.31	+1.8
1,288,231	+		DZA65_RS06220	0.31	+0.0
1,288,232	-		DZA65_RS06220	0.31	+1.4
1,288,232	-		DZA65_RS06220	0.31	+1.1
1,288,232	-		DZA65_RS06220	0.31	+0.1
1,288,294	+		DZA65_RS06220	0.38	-0.4
1,288,294	+		DZA65_RS06220	0.38	-0.7
1,288,294	+		DZA65_RS06220	0.38	+0.2
1,288,294	+		DZA65_RS06220	0.38	-0.2
1,288,294	+		DZA65_RS06220	0.38	-0.1
1,288,294	+		DZA65_RS06220	0.38	-1.4
1,288,294	+		DZA65_RS06220	0.38	-1.6
1,288,294	+		DZA65_RS06220	0.38	+0.0
1,288,294	+		DZA65_RS06220	0.38	+0.6
1,288,295	-		DZA65_RS06220	0.38	-1.4
1,288,295	-		DZA65_RS06220	0.38	+0.2
1,288,295	-		DZA65_RS06220	0.38	-0.6
1,288,295	-		DZA65_RS06220	0.38	-0.0
1,288,295	-		DZA65_RS06220	0.38	-0.6
1,288,295	-		DZA65_RS06220	0.38	-0.1
1,288,295	-		DZA65_RS06220	0.38	+1.4
1,288,295	-		DZA65_RS06220	0.38	+0.6
1,288,295	-		DZA65_RS06220	0.38	+0.8
1,288,298	+		DZA65_RS06220	0.39	-0.0
1,288,298	+		DZA65_RS06220	0.39	-1.4
1,288,298	+		DZA65_RS06220	0.39	-0.9
1,288,298	+		DZA65_RS06220	0.39	-0.4
1,288,298	+		DZA65_RS06220	0.39	+0.4
1,288,298	+		DZA65_RS06220	0.39	+1.4
1,288,298	+		DZA65_RS06220	0.39	-0.6
1,288,298	+		DZA65_RS06220	0.39	-0.2
1,288,298	+		DZA65_RS06220	0.39	-0.7
1,288,298	+		DZA65_RS06220	0.39	-0.4
1,288,298	+		DZA65_RS06220	0.39	+0.7
1,288,299	-		DZA65_RS06220	0.39	-0.5
1,288,299	-		DZA65_RS06220	0.39	+0.9
1,288,299	-		DZA65_RS06220	0.39	-0.3
1,288,299	-		DZA65_RS06220	0.39	-0.3
1,288,299	-		DZA65_RS06220	0.39	-0.6
1,288,299	-		DZA65_RS06220	0.39	+0.4
1,288,299	-		DZA65_RS06220	0.39	-1.2
1,288,299	-		DZA65_RS06220	0.39	-2.0
1,288,299	-		DZA65_RS06220	0.39	-0.4
1,288,368	+		DZA65_RS06220	0.47	-0.3