Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04240 and DZA65_RS04250 are separated by 172 nucleotides DZA65_RS04250 and DZA65_RS04255 are separated by 477 nucleotides
DZA65_RS04240: DZA65_RS04240 - NAD(+) kinase, at 884,871 to 885,749
_RS04240
DZA65_RS04250: DZA65_RS04250 - nucleotide exchange factor GrpE, at 885,922 to 886,509
_RS04250
DZA65_RS04255: DZA65_RS04255 - divalent metal cation transporter, at 886,987 to 888,222
_RS04255
Position (kb) 885
886
887 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.817 kb on + strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.876 kb on + strand at 885.888 kb on + strand at 886.507 kb on + strand at 886.508 kb on - strand at 886.508 kb on - strand at 886.508 kb on - strand at 886.614 kb on - strand at 886.631 kb on + strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.691 kb on + strand at 886.692 kb on - strand at 886.692 kb on - strand at 886.695 kb on + strand at 886.695 kb on + strand at 886.695 kb on + strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.710 kb on - strand at 886.713 kb on + strand at 886.714 kb on - strand at 886.721 kb on + strand at 886.722 kb on - strand at 886.764 kb on + strand at 886.764 kb on + strand at 886.765 kb on - strand at 886.768 kb on + strand at 886.806 kb on + strand at 886.806 kb on + strand at 886.811 kb on + strand at 886.811 kb on + strand at 886.816 kb on + strand at 886.816 kb on + strand at 886.816 kb on + strand at 886.816 kb on + strand at 886.817 kb on - strand at 886.817 kb on - strand at 886.817 kb on - strand at 886.817 kb on - strand at 886.817 kb on - strand at 886.817 kb on - strand at 886.817 kb on - strand at 886.817 kb on - strand at 886.879 kb on + strand at 886.879 kb on + strand at 886.879 kb on + strand at 886.880 kb on - strand at 886.880 kb on - strand at 886.882 kb on + strand at 886.883 kb on - strand at 886.883 kb on - strand at 886.883 kb on - strand at 886.883 kb on - strand at 886.883 kb on - strand at 886.898 kb on + strand at 886.898 kb on + strand at 886.902 kb on - strand at 886.920 kb on + strand at 886.921 kb on - strand at 886.921 kb on - strand at 886.937 kb on - strand at 886.937 kb on - strand at 886.939 kb on + strand at 886.971 kb on + strand at 886.971 kb on + strand at 886.971 kb on + strand at 886.972 kb on - strand at 886.972 kb on - strand at 886.972 kb on - strand at 886.986 kb on + strand at 886.986 kb on + strand at 886.987 kb on - strand at 887.003 kb on + strand at 887.003 kb on + strand at 887.003 kb on + strand at 887.004 kb on - strand at 887.004 kb on - strand at 887.004 kb on - strand at 887.022 kb on + strand at 887.023 kb on - strand at 887.023 kb on - strand at 887.064 kb on + strand at 887.080 kb on + strand at 887.081 kb on - strand at 887.082 kb on + strand at 887.082 kb on + strand at 887.082 kb on + strand at 887.083 kb on - strand at 887.083 kb on - strand at 887.083 kb on - strand at 887.083 kb on - strand at 887.083 kb on - strand at 887.109 kb on + strand at 887.128 kb on + strand, within DZA65_RS04255 at 887.129 kb on - strand, within DZA65_RS04255 at 887.189 kb on + strand, within DZA65_RS04255 at 887.189 kb on + strand, within DZA65_RS04255 at 887.189 kb on + strand, within DZA65_RS04255 at 887.189 kb on + strand at 887.190 kb on - strand, within DZA65_RS04255 at 887.190 kb on - strand, within DZA65_RS04255 at 887.190 kb on - strand, within DZA65_RS04255 at 887.190 kb on - strand, within DZA65_RS04255 at 887.238 kb on + strand, within DZA65_RS04255 at 887.238 kb on + strand, within DZA65_RS04255 at 887.239 kb on - strand, within DZA65_RS04255 at 887.346 kb on + strand, within DZA65_RS04255 at 887.347 kb on - strand, within DZA65_RS04255 at 887.347 kb on - strand, within DZA65_RS04255 at 887.347 kb on - strand, within DZA65_RS04255 at 887.351 kb on + strand, within DZA65_RS04255 at 887.351 kb on + strand, within DZA65_RS04255 at 887.351 kb on + strand, within DZA65_RS04255 at 887.351 kb on + strand, within DZA65_RS04255 at 887.351 kb on + strand, within DZA65_RS04255 at 887.352 kb on - strand, within DZA65_RS04255 at 887.400 kb on + strand, within DZA65_RS04255 at 887.400 kb on + strand, within DZA65_RS04255 at 887.400 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.488 kb on + strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.489 kb on - strand, within DZA65_RS04255 at 887.490 kb on + strand, within DZA65_RS04255 at 887.490 kb on + strand, within DZA65_RS04255 at 887.490 kb on + strand, within DZA65_RS04255 at 887.490 kb on + strand, within DZA65_RS04255 at 887.490 kb on + strand, within DZA65_RS04255 at 887.491 kb on - strand, within DZA65_RS04255 at 887.491 kb on - strand, within DZA65_RS04255 at 887.491 kb on - strand at 887.491 kb on - strand, within DZA65_RS04255 at 887.491 kb on - strand, within DZA65_RS04255 at 887.491 kb on - strand, within DZA65_RS04255 at 887.491 kb on - strand, within DZA65_RS04255 at 887.491 kb on - strand, within DZA65_RS04255 at 887.491 kb on - strand, within DZA65_RS04255
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 885,761 - -1.5 885,761 - -1.9 885,761 - -1.3 885,761 - -0.0 885,761 - +0.2 885,761 - -0.4 885,761 - +0.5 885,761 - +0.2 885,761 - -0.6 885,761 - -1.5 885,817 + -2.3 885,818 - -0.3 885,818 - +0.2 885,818 - -2.1 885,818 - +0.7 885,818 - -0.1 885,818 - +1.7 885,818 - -1.7 885,818 - +0.1 885,818 - +0.5 885,876 + -1.3 885,888 + -0.3 886,507 + +0.8 886,508 - -0.3 886,508 - +0.5 886,508 - +0.0 886,614 - -0.1 886,631 + +0.5 886,632 - +0.0 886,632 - +1.2 886,632 - -1.5 886,632 - +0.2 886,691 + +0.5 886,692 - +0.5 886,692 - -0.4 886,695 + +1.0 886,695 + -0.3 886,695 + +0.3 886,696 - +0.8 886,696 - -0.3 886,696 - -0.4 886,696 - -0.5 886,696 - +0.9 886,696 - +0.2 886,709 + -0.1 886,709 + +0.2 886,710 - +0.7 886,713 + +0.1 886,714 - +1.7 886,721 + +1.4 886,722 - +0.1 886,764 + +0.5 886,764 + +0.2 886,765 - -0.4 886,768 + +1.8 886,806 + -1.5 886,806 + +1.1 886,811 + +0.1 886,811 + +0.1 886,816 + +1.5 886,816 + -0.5 886,816 + +0.3 886,816 + +0.6 886,817 - +0.7 886,817 - -1.5 886,817 - -0.7 886,817 - +0.5 886,817 - -1.2 886,817 - -1.4 886,817 - +0.9 886,817 - +0.5 886,879 + +0.9 886,879 + +0.5 886,879 + +0.5 886,880 - -1.8 886,880 - -2.0 886,882 + -0.1 886,883 - -1.9 886,883 - -0.5 886,883 - -1.8 886,883 - +1.2 886,883 - -2.7 886,898 + -0.5 886,898 + -0.7 886,902 - -1.2 886,920 + +0.2 886,921 - +0.5 886,921 - -1.5 886,937 - +0.5 886,937 - -2.7 886,939 + +1.5 886,971 + -3.0 886,971 + +3.0 886,971 + -1.2 886,972 - +0.5 886,972 - -3.5 886,972 - -2.1 886,986 + -0.3 886,986 + -0.4 886,987 - -0.5 887,003 + -1.7 887,003 + -0.7 887,003 + -2.9 887,004 - -2.2 887,004 - -1.3 887,004 - -1.1 887,022 + -2.2 887,023 - -1.1 887,023 - -0.8 887,064 + -2.9 887,080 + -1.5 887,081 - -1.5 887,082 + -2.0 887,082 + -1.6 887,082 + -2.1 887,083 - -3.6 887,083 - -2.3 887,083 - +0.2 887,083 - -1.7 887,083 - -2.1 887,109 + -3.2 887,128 + DZA65_RS04255 0.11 -0.5 887,129 - DZA65_RS04255 0.11 -0.9 887,189 + DZA65_RS04255 0.16 -0.5 887,189 + DZA65_RS04255 0.16 +1.0 887,189 + DZA65_RS04255 0.16 -1.5 887,189 + -1.5 887,190 - DZA65_RS04255 0.16 -1.3 887,190 - DZA65_RS04255 0.16 -3.4 887,190 - DZA65_RS04255 0.16 -3.6 887,190 - DZA65_RS04255 0.16 -1.2 887,238 + DZA65_RS04255 0.20 -3.2 887,238 + DZA65_RS04255 0.20 -2.3 887,239 - DZA65_RS04255 0.20 -3.6 887,346 + DZA65_RS04255 0.29 -2.1 887,347 - DZA65_RS04255 0.29 -0.8 887,347 - DZA65_RS04255 0.29 -0.5 887,347 - DZA65_RS04255 0.29 -3.7 887,351 + DZA65_RS04255 0.29 -0.8 887,351 + DZA65_RS04255 0.29 -0.7 887,351 + DZA65_RS04255 0.29 -2.2 887,351 + DZA65_RS04255 0.29 -2.7 887,351 + DZA65_RS04255 0.29 -2.2 887,352 - DZA65_RS04255 0.30 +0.2 887,400 + DZA65_RS04255 0.33 -1.9 887,400 + DZA65_RS04255 0.33 -3.9 887,400 + DZA65_RS04255 0.33 -1.5 887,488 + DZA65_RS04255 0.41 -2.3 887,488 + DZA65_RS04255 0.41 -2.6 887,488 + DZA65_RS04255 0.41 -2.8 887,488 + DZA65_RS04255 0.41 -1.9 887,488 + DZA65_RS04255 0.41 -1.3 887,488 + DZA65_RS04255 0.41 -2.5 887,488 + DZA65_RS04255 0.41 -3.0 887,488 + DZA65_RS04255 0.41 -0.1 887,488 + DZA65_RS04255 0.41 -2.9 887,488 + DZA65_RS04255 0.41 -2.7 887,489 - DZA65_RS04255 0.41 -2.7 887,489 - DZA65_RS04255 0.41 -2.4 887,489 - DZA65_RS04255 0.41 -0.5 887,489 - DZA65_RS04255 0.41 -2.8 887,489 - DZA65_RS04255 0.41 -1.7 887,489 - DZA65_RS04255 0.41 -0.1 887,489 - DZA65_RS04255 0.41 -2.5 887,489 - DZA65_RS04255 0.41 -1.9 887,489 - DZA65_RS04255 0.41 -1.9 887,489 - DZA65_RS04255 0.41 -2.8 887,490 + DZA65_RS04255 0.41 -0.5 887,490 + DZA65_RS04255 0.41 -2.3 887,490 + DZA65_RS04255 0.41 +1.5 887,490 + DZA65_RS04255 0.41 -1.5 887,490 + DZA65_RS04255 0.41 -0.8 887,491 - DZA65_RS04255 0.41 -0.5 887,491 - DZA65_RS04255 0.41 -0.5 887,491 - +0.5 887,491 - DZA65_RS04255 0.41 -0.5 887,491 - DZA65_RS04255 0.41 -0.7 887,491 - DZA65_RS04255 0.41 -0.3 887,491 - DZA65_RS04255 0.41 -2.1 887,491 - DZA65_RS04255 0.41 -2.3 887,491 - DZA65_RS04255 0.41 -1.1
Or see this region's nucleotide sequence