Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04095

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04090 and DZA65_RS04095 are separated by 3 nucleotidesDZA65_RS04095 and DZA65_RS04100 are separated by 96 nucleotidesDZA65_RS04100 and DZA65_RS04105 overlap by 4 nucleotides DZA65_RS04090: DZA65_RS04090 - phage major capsid protein, P2 family, at 863,967 to 864,995 _RS04090 DZA65_RS04095: DZA65_RS04095 - terminase, at 864,999 to 865,700 _RS04095 DZA65_RS04100: DZA65_RS04100 - head completion/stabilization protein, at 865,797 to 866,249 _RS04100 DZA65_RS04105: DZA65_RS04105 - phage tail protein, at 866,246 to 866,743 _RS04105 Position (kb) 864 865 866Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 864.007 kb on - strandat 864.007 kb on - strandat 864.252 kb on + strand, within DZA65_RS04090at 864.252 kb on + strand, within DZA65_RS04090at 864.252 kb on + strand, within DZA65_RS04090at 864.252 kb on + strand, within DZA65_RS04090at 864.253 kb on - strand, within DZA65_RS04090at 864.253 kb on - strand, within DZA65_RS04090at 864.253 kb on - strand, within DZA65_RS04090at 864.253 kb on - strand, within DZA65_RS04090at 864.254 kb on + strand, within DZA65_RS04090at 864.254 kb on + strand, within DZA65_RS04090at 864.254 kb on + strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.383 kb on + strand, within DZA65_RS04090at 864.512 kb on + strand, within DZA65_RS04090at 864.513 kb on - strand, within DZA65_RS04090at 864.529 kb on + strandat 864.549 kb on + strand, within DZA65_RS04090at 864.550 kb on - strand, within DZA65_RS04090at 864.666 kb on + strand, within DZA65_RS04090at 864.765 kb on - strand, within DZA65_RS04090at 864.765 kb on - strand, within DZA65_RS04090at 864.779 kb on + strand, within DZA65_RS04090at 864.779 kb on + strandat 864.780 kb on - strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.810 kb on - strand, within DZA65_RS04090at 864.810 kb on - strand, within DZA65_RS04090at 864.810 kb on - strand, within DZA65_RS04090at 864.813 kb on + strand, within DZA65_RS04090at 864.813 kb on + strand, within DZA65_RS04090at 864.813 kb on + strand, within DZA65_RS04090at 864.814 kb on - strand, within DZA65_RS04090at 864.814 kb on - strand, within DZA65_RS04090at 864.824 kb on + strand, within DZA65_RS04090at 864.825 kb on - strand, within DZA65_RS04090at 864.825 kb on - strand, within DZA65_RS04090at 864.825 kb on - strand, within DZA65_RS04090at 864.825 kb on - strand, within DZA65_RS04090at 864.883 kb on - strand, within DZA65_RS04090at 864.925 kb on - strandat 864.925 kb on - strandat 864.925 kb on - strandat 864.925 kb on - strandat 865.054 kb on + strandat 865.055 kb on - strandat 865.207 kb on + strand, within DZA65_RS04095at 865.208 kb on - strand, within DZA65_RS04095at 865.208 kb on - strand, within DZA65_RS04095at 865.208 kb on - strand, within DZA65_RS04095at 865.215 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.237 kb on - strand, within DZA65_RS04095at 865.390 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.483 kb on + strand, within DZA65_RS04095at 865.483 kb on + strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.529 kb on - strand, within DZA65_RS04095at 865.664 kb on + strandat 865.698 kb on + strandat 865.698 kb on + strandat 865.698 kb on + strandat 865.699 kb on - strandat 865.706 kb on + strandat 865.707 kb on - strandat 865.785 kb on + strandat 865.822 kb on - strandat 865.834 kb on + strandat 865.834 kb on + strandat 865.834 kb on + strandat 865.835 kb on - strandat 865.835 kb on - strandat 866.006 kb on + strand, within DZA65_RS04100at 866.007 kb on - strand, within DZA65_RS04100at 866.245 kb on + strandat 866.245 kb on + strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.466 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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864,007 - +1.3
864,007 - -1.1
864,252 + DZA65_RS04090 0.28 +1.1
864,252 + DZA65_RS04090 0.28 +0.5
864,252 + DZA65_RS04090 0.28 -0.3
864,252 + DZA65_RS04090 0.28 -0.5
864,253 - DZA65_RS04090 0.28 -0.4
864,253 - DZA65_RS04090 0.28 -3.3
864,253 - DZA65_RS04090 0.28 -1.8
864,253 - DZA65_RS04090 0.28 +1.9
864,254 + DZA65_RS04090 0.28 +2.1
864,254 + DZA65_RS04090 0.28 +0.9
864,254 + DZA65_RS04090 0.28 +0.8
864,255 - DZA65_RS04090 0.28 +0.2
864,255 - DZA65_RS04090 0.28 +1.0
864,255 - DZA65_RS04090 0.28 -0.7
864,255 - DZA65_RS04090 0.28 +0.3
864,255 - DZA65_RS04090 0.28 +0.3
864,255 - DZA65_RS04090 0.28 -0.4
864,383 + DZA65_RS04090 0.40 +0.2
864,512 + DZA65_RS04090 0.53 +0.3
864,513 - DZA65_RS04090 0.53 +0.8
864,529 + +0.1
864,549 + DZA65_RS04090 0.57 -2.5
864,550 - DZA65_RS04090 0.57 -1.3
864,666 + DZA65_RS04090 0.68 +0.8
864,765 - DZA65_RS04090 0.78 +0.1
864,765 - DZA65_RS04090 0.78 +0.2
864,779 + DZA65_RS04090 0.79 -0.3
864,779 + -0.3
864,780 - DZA65_RS04090 0.79 +1.9
864,809 + DZA65_RS04090 0.82 +0.8
864,809 + DZA65_RS04090 0.82 -0.1
864,809 + DZA65_RS04090 0.82 +0.1
864,809 + DZA65_RS04090 0.82 -0.4
864,809 + DZA65_RS04090 0.82 +1.6
864,809 + DZA65_RS04090 0.82 +2.5
864,809 + DZA65_RS04090 0.82 +0.3
864,810 - DZA65_RS04090 0.82 +0.5
864,810 - DZA65_RS04090 0.82 +0.6
864,810 - DZA65_RS04090 0.82 -0.7
864,813 + DZA65_RS04090 0.82 +0.3
864,813 + DZA65_RS04090 0.82 +1.3
864,813 + DZA65_RS04090 0.82 +0.7
864,814 - DZA65_RS04090 0.82 -0.4
864,814 - DZA65_RS04090 0.82 -0.2
864,824 + DZA65_RS04090 0.83 +0.4
864,825 - DZA65_RS04090 0.83 +2.2
864,825 - DZA65_RS04090 0.83 +0.5
864,825 - DZA65_RS04090 0.83 -2.7
864,825 - DZA65_RS04090 0.83 +0.1
864,883 - DZA65_RS04090 0.89 -1.1
864,925 - +1.3
864,925 - +0.3
864,925 - -0.6
864,925 - -1.3
865,054 + -0.2
865,055 - -0.4
865,207 + DZA65_RS04095 0.30 +0.0
865,208 - DZA65_RS04095 0.30 -1.7
865,208 - DZA65_RS04095 0.30 +0.9
865,208 - DZA65_RS04095 0.30 +0.9
865,215 + DZA65_RS04095 0.31 +0.6
865,236 + DZA65_RS04095 0.34 -0.1
865,236 + DZA65_RS04095 0.34 +0.7
865,236 + DZA65_RS04095 0.34 -1.4
865,236 + DZA65_RS04095 0.34 +1.1
865,236 + DZA65_RS04095 0.34 -1.1
865,237 - DZA65_RS04095 0.34 -1.7
865,390 + DZA65_RS04095 0.56 +0.1
865,420 + DZA65_RS04095 0.60 +0.9
865,420 + DZA65_RS04095 0.60 +0.8
865,420 + DZA65_RS04095 0.60 +0.6
865,441 - DZA65_RS04095 0.63 +0.1
865,441 - DZA65_RS04095 0.63 +0.1
865,441 - DZA65_RS04095 0.63 +0.2
865,483 + DZA65_RS04095 0.69 +0.3
865,483 + DZA65_RS04095 0.69 -0.8
865,484 - DZA65_RS04095 0.69 -1.1
865,484 - DZA65_RS04095 0.69 -0.3
865,484 - DZA65_RS04095 0.69 -0.2
865,484 - DZA65_RS04095 0.69 +1.6
865,484 - DZA65_RS04095 0.69 +0.3
865,529 - DZA65_RS04095 0.75 +1.3
865,664 + -1.5
865,698 + -0.0
865,698 + +1.7
865,698 + -1.1
865,699 - -1.5
865,706 + -0.7
865,707 - +0.2
865,785 + -0.2
865,822 - -0.1
865,834 + -0.8
865,834 + -0.2
865,834 + -0.5
865,835 - +0.9
865,835 - -0.5
866,006 + DZA65_RS04100 0.46 -0.7
866,007 - DZA65_RS04100 0.46 -2.1
866,245 + +0.1
866,245 + +0.1
866,246 - +1.8
866,246 - +0.2
866,246 - -0.3
866,246 - -0.5
866,246 - +0.5
866,246 - -2.8
866,466 + DZA65_RS04105 0.44 -0.3
866,501 + DZA65_RS04105 0.51 +0.3
866,501 + DZA65_RS04105 0.51 -0.4
866,501 + DZA65_RS04105 0.51 -0.9
866,502 - DZA65_RS04105 0.51 -0.4
866,502 - DZA65_RS04105 0.51 -0.0
866,502 - DZA65_RS04105 0.51 -0.4
866,502 - DZA65_RS04105 0.51 -1.3
866,502 - DZA65_RS04105 0.51 +0.3
866,502 - DZA65_RS04105 0.51 +0.2

Or see this region's nucleotide sequence