Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03375 and DZA65_RS03380 overlap by 32 nucleotides DZA65_RS03380 and DZA65_RS03385 are separated by 153 nucleotides DZA65_RS03385 and DZA65_RS03390 are separated by 40 nucleotides
DZA65_RS03375: DZA65_RS03375 - ribosomal protein S18-alanine N-acetyltransferase, at 716,025 to 716,468
_RS03375
DZA65_RS03380: DZA65_RS03380 - DNA polymerase III subunit psi, at 716,437 to 716,856
_RS03380
DZA65_RS03385: DZA65_RS03385 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 717,010 to 718,038
_RS03385
DZA65_RS03390: DZA65_RS03390 - aldo/keto reductase, at 718,079 to 719,074
_RS03390
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 716.013 kb on + strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.013 kb on + strand at 716.014 kb on - strand at 716.014 kb on - strand at 716.014 kb on - strand at 716.048 kb on + strand at 716.048 kb on + strand at 716.100 kb on + strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.101 kb on - strand, within DZA65_RS03375 at 716.125 kb on + strand, within DZA65_RS03375 at 716.125 kb on + strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.143 kb on - strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.178 kb on + strand, within DZA65_RS03375 at 716.179 kb on - strand, within DZA65_RS03375 at 716.179 kb on - strand, within DZA65_RS03375 at 716.181 kb on - strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.276 kb on + strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.277 kb on - strand, within DZA65_RS03375 at 716.289 kb on + strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.290 kb on - strand, within DZA65_RS03375 at 716.292 kb on + strand, within DZA65_RS03375 at 716.293 kb on - strand, within DZA65_RS03375 at 716.309 kb on - strand, within DZA65_RS03375 at 716.350 kb on + strand, within DZA65_RS03375 at 716.351 kb on - strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.406 kb on + strand, within DZA65_RS03375 at 716.407 kb on - strand, within DZA65_RS03375 at 716.407 kb on - strand, within DZA65_RS03375 at 716.896 kb on - strand at 716.896 kb on - strand at 716.896 kb on - strand at 716.936 kb on - strand at 716.936 kb on - strand at 716.941 kb on - strand at 716.941 kb on - strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.973 kb on + strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.974 kb on - strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.975 kb on + strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.976 kb on - strand at 716.991 kb on + strand at 717.021 kb on - strand at 717.041 kb on + strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.042 kb on - strand at 717.140 kb on + strand, within DZA65_RS03385 at 717.140 kb on + strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.141 kb on - strand, within DZA65_RS03385 at 717.154 kb on + strand, within DZA65_RS03385 at 717.154 kb on + strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.155 kb on - strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.253 kb on + strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.254 kb on - strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.405 kb on + strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.406 kb on - strand, within DZA65_RS03385 at 717.437 kb on - strand, within DZA65_RS03385 at 717.437 kb on - strand, within DZA65_RS03385 at 717.462 kb on + strand, within DZA65_RS03385 at 717.462 kb on + strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.463 kb on - strand, within DZA65_RS03385 at 717.493 kb on + strand, within DZA65_RS03385 at 717.494 kb on - strand, within DZA65_RS03385 at 717.494 kb on - strand, within DZA65_RS03385 at 717.515 kb on + strand, within DZA65_RS03385 at 717.533 kb on + strand, within DZA65_RS03385 at 717.533 kb on + strand, within DZA65_RS03385 at 717.533 kb on + strand, within DZA65_RS03385 at 717.534 kb on - strand, within DZA65_RS03385 at 717.683 kb on + strand, within DZA65_RS03385 at 717.684 kb on - strand, within DZA65_RS03385 at 717.684 kb on - strand, within DZA65_RS03385 at 717.773 kb on - strand, within DZA65_RS03385 at 718.023 kb on + strand at 718.024 kb on - strand at 718.024 kb on - strand at 718.027 kb on - strand at 718.117 kb on - strand at 718.117 kb on - strand at 718.218 kb on + strand, within DZA65_RS03390 at 718.328 kb on - strand, within DZA65_RS03390 at 718.328 kb on - strand, within DZA65_RS03390 at 718.454 kb on + strand, within DZA65_RS03390 at 718.454 kb on + strand, within DZA65_RS03390 at 718.464 kb on + strand, within DZA65_RS03390 at 718.464 kb on + strand, within DZA65_RS03390 at 718.464 kb on + strand, within DZA65_RS03390 at 718.539 kb on + strand, within DZA65_RS03390 at 718.540 kb on - strand, within DZA65_RS03390 at 718.562 kb on - strand, within DZA65_RS03390 at 718.562 kb on - strand, within DZA65_RS03390 at 718.619 kb on - strand, within DZA65_RS03390 at 718.620 kb on + strand, within DZA65_RS03390 at 718.620 kb on + strand, within DZA65_RS03390 at 718.620 kb on + strand, within DZA65_RS03390 at 718.621 kb on - strand, within DZA65_RS03390 at 718.621 kb on - strand, within DZA65_RS03390 at 718.621 kb on - strand, within DZA65_RS03390 at 718.621 kb on - strand, within DZA65_RS03390 at 718.694 kb on - strand, within DZA65_RS03390 at 718.704 kb on + strand, within DZA65_RS03390 at 718.704 kb on + strand, within DZA65_RS03390 at 718.705 kb on - strand, within DZA65_RS03390 at 718.707 kb on + strand, within DZA65_RS03390 at 718.707 kb on + strand, within DZA65_RS03390 at 718.708 kb on - strand, within DZA65_RS03390 at 718.767 kb on + strand, within DZA65_RS03390 at 718.767 kb on + strand, within DZA65_RS03390 at 718.767 kb on + strand, within DZA65_RS03390 at 718.768 kb on - strand, within DZA65_RS03390 at 718.768 kb on - strand, within DZA65_RS03390 at 718.878 kb on - strand, within DZA65_RS03390 at 718.878 kb on - strand, within DZA65_RS03390 at 718.894 kb on + strand, within DZA65_RS03390 at 718.895 kb on - strand, within DZA65_RS03390 at 718.895 kb on - strand at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.905 kb on + strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.906 kb on - strand, within DZA65_RS03390 at 718.909 kb on + strand, within DZA65_RS03390 at 718.909 kb on + strand, within DZA65_RS03390 at 718.909 kb on + strand, within DZA65_RS03390 at 718.909 kb on + strand at 718.910 kb on - strand, within DZA65_RS03390 at 718.910 kb on - strand, within DZA65_RS03390 at 718.910 kb on - strand, within DZA65_RS03390 at 718.910 kb on - strand, within DZA65_RS03390 at 718.995 kb on + strand at 718.995 kb on + strand at 718.995 kb on + strand at 718.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 716,013 + -0.1 716,013 + +0.5 716,013 + -0.8 716,013 + +0.9 716,014 - -0.2 716,014 - +0.8 716,014 - +1.2 716,048 + -1.8 716,048 + -0.4 716,100 + DZA65_RS03375 0.17 +1.2 716,101 - DZA65_RS03375 0.17 -0.1 716,101 - DZA65_RS03375 0.17 +0.5 716,101 - DZA65_RS03375 0.17 -1.5 716,125 + DZA65_RS03375 0.23 +0.2 716,125 + DZA65_RS03375 0.23 +0.6 716,143 - DZA65_RS03375 0.27 -1.0 716,143 - DZA65_RS03375 0.27 +1.2 716,143 - DZA65_RS03375 0.27 -0.5 716,143 - DZA65_RS03375 0.27 -1.7 716,143 - DZA65_RS03375 0.27 -1.8 716,178 + DZA65_RS03375 0.34 -3.2 716,178 + DZA65_RS03375 0.34 +0.7 716,178 + DZA65_RS03375 0.34 +0.7 716,178 + DZA65_RS03375 0.34 -0.7 716,179 - DZA65_RS03375 0.35 -3.0 716,179 - DZA65_RS03375 0.35 -0.1 716,181 - DZA65_RS03375 0.35 -1.1 716,276 + DZA65_RS03375 0.57 +1.1 716,276 + DZA65_RS03375 0.57 +0.5 716,276 + DZA65_RS03375 0.57 +0.3 716,276 + DZA65_RS03375 0.57 -1.0 716,276 + DZA65_RS03375 0.57 -1.5 716,276 + DZA65_RS03375 0.57 -0.4 716,277 - DZA65_RS03375 0.57 -1.4 716,277 - DZA65_RS03375 0.57 -0.2 716,277 - DZA65_RS03375 0.57 -2.3 716,277 - DZA65_RS03375 0.57 +0.2 716,277 - DZA65_RS03375 0.57 +1.0 716,277 - DZA65_RS03375 0.57 -1.4 716,289 + DZA65_RS03375 0.59 -0.4 716,290 - DZA65_RS03375 0.60 -1.4 716,290 - DZA65_RS03375 0.60 +0.2 716,290 - DZA65_RS03375 0.60 -1.8 716,292 + DZA65_RS03375 0.60 +1.3 716,293 - DZA65_RS03375 0.60 -1.8 716,309 - DZA65_RS03375 0.64 -0.0 716,350 + DZA65_RS03375 0.73 +0.5 716,351 - DZA65_RS03375 0.73 -2.3 716,406 + DZA65_RS03375 0.86 +1.8 716,406 + DZA65_RS03375 0.86 +1.4 716,406 + DZA65_RS03375 0.86 -0.5 716,407 - DZA65_RS03375 0.86 -1.0 716,407 - DZA65_RS03375 0.86 -0.2 716,896 - -0.2 716,896 - -0.7 716,896 - -0.2 716,936 - -0.3 716,936 - +0.0 716,941 - +0.3 716,941 - +1.1 716,973 + +1.1 716,973 + -0.5 716,973 + +1.1 716,973 + +1.3 716,974 - -0.6 716,974 - +0.2 716,974 - -1.4 716,974 - +0.1 716,974 - -1.6 716,974 - +1.1 716,974 - -0.8 716,974 - -2.3 716,974 - +0.0 716,975 + -0.2 716,975 + -1.8 716,975 + +0.7 716,975 + -0.0 716,975 + -0.1 716,975 + +0.5 716,975 + -1.3 716,975 + +0.5 716,976 - +0.3 716,976 - +0.4 716,976 - +1.0 716,976 - -0.5 716,976 - -0.3 716,976 - -0.3 716,976 - -0.2 716,976 - -1.1 716,976 - +0.1 716,991 + -0.7 717,021 - +1.1 717,041 + -0.5 717,042 - +0.2 717,042 - -0.1 717,042 - +1.5 717,042 - +1.3 717,140 + DZA65_RS03385 0.13 +0.2 717,140 + DZA65_RS03385 0.13 -0.1 717,141 - DZA65_RS03385 0.13 -0.2 717,141 - DZA65_RS03385 0.13 -1.1 717,141 - DZA65_RS03385 0.13 +0.2 717,141 - DZA65_RS03385 0.13 +0.4 717,141 - DZA65_RS03385 0.13 -1.3 717,141 - DZA65_RS03385 0.13 +2.1 717,154 + DZA65_RS03385 0.14 -0.5 717,154 + DZA65_RS03385 0.14 +1.1 717,155 - DZA65_RS03385 0.14 +0.4 717,155 - DZA65_RS03385 0.14 -0.5 717,155 - DZA65_RS03385 0.14 +0.6 717,155 - DZA65_RS03385 0.14 +1.1 717,155 - DZA65_RS03385 0.14 +1.0 717,155 - DZA65_RS03385 0.14 -0.3 717,155 - DZA65_RS03385 0.14 -0.3 717,155 - DZA65_RS03385 0.14 +0.2 717,253 + DZA65_RS03385 0.24 +0.6 717,253 + DZA65_RS03385 0.24 +0.0 717,253 + DZA65_RS03385 0.24 +1.1 717,253 + DZA65_RS03385 0.24 +1.3 717,253 + DZA65_RS03385 0.24 +0.3 717,253 + DZA65_RS03385 0.24 -0.1 717,254 - DZA65_RS03385 0.24 -1.3 717,254 - DZA65_RS03385 0.24 +1.8 717,254 - DZA65_RS03385 0.24 -0.8 717,254 - DZA65_RS03385 0.24 -0.5 717,254 - DZA65_RS03385 0.24 -1.2 717,254 - DZA65_RS03385 0.24 +0.5 717,405 + DZA65_RS03385 0.38 +0.5 717,405 + DZA65_RS03385 0.38 -0.2 717,405 + DZA65_RS03385 0.38 +0.4 717,405 + DZA65_RS03385 0.38 -0.1 717,405 + DZA65_RS03385 0.38 -1.5 717,405 + DZA65_RS03385 0.38 -1.1 717,405 + DZA65_RS03385 0.38 -0.1 717,405 + DZA65_RS03385 0.38 -0.3 717,406 - DZA65_RS03385 0.38 -0.2 717,406 - DZA65_RS03385 0.38 -0.2 717,406 - DZA65_RS03385 0.38 +0.5 717,406 - DZA65_RS03385 0.38 +0.1 717,406 - DZA65_RS03385 0.38 +0.8 717,437 - DZA65_RS03385 0.41 +1.0 717,437 - DZA65_RS03385 0.41 +1.5 717,462 + DZA65_RS03385 0.44 -0.4 717,462 + DZA65_RS03385 0.44 +0.8 717,463 - DZA65_RS03385 0.44 +0.1 717,463 - DZA65_RS03385 0.44 +0.5 717,463 - DZA65_RS03385 0.44 -0.5 717,463 - DZA65_RS03385 0.44 +0.6 717,493 + DZA65_RS03385 0.47 +0.9 717,494 - DZA65_RS03385 0.47 +0.4 717,494 - DZA65_RS03385 0.47 +0.9 717,515 + DZA65_RS03385 0.49 +0.2 717,533 + DZA65_RS03385 0.51 +0.5 717,533 + DZA65_RS03385 0.51 -0.5 717,533 + DZA65_RS03385 0.51 +1.7 717,534 - DZA65_RS03385 0.51 -0.4 717,683 + DZA65_RS03385 0.65 -1.8 717,684 - DZA65_RS03385 0.66 +0.7 717,684 - DZA65_RS03385 0.66 -0.0 717,773 - DZA65_RS03385 0.74 -0.1 718,023 + -0.5 718,024 - -1.1 718,024 - -0.2 718,027 - +0.9 718,117 - +0.8 718,117 - +0.9 718,218 + DZA65_RS03390 0.14 +0.7 718,328 - DZA65_RS03390 0.25 +1.0 718,328 - DZA65_RS03390 0.25 -0.0 718,454 + DZA65_RS03390 0.38 +0.1 718,454 + DZA65_RS03390 0.38 -0.5 718,464 + DZA65_RS03390 0.39 -0.0 718,464 + DZA65_RS03390 0.39 -0.3 718,464 + DZA65_RS03390 0.39 -0.3 718,539 + DZA65_RS03390 0.46 -0.1 718,540 - DZA65_RS03390 0.46 +0.5 718,562 - DZA65_RS03390 0.48 +0.2 718,562 - DZA65_RS03390 0.48 -0.1 718,619 - DZA65_RS03390 0.54 +0.2 718,620 + DZA65_RS03390 0.54 -0.1 718,620 + DZA65_RS03390 0.54 +0.2 718,620 + DZA65_RS03390 0.54 +1.8 718,621 - DZA65_RS03390 0.54 -1.1 718,621 - DZA65_RS03390 0.54 +0.3 718,621 - DZA65_RS03390 0.54 -1.8 718,621 - DZA65_RS03390 0.54 -0.8 718,694 - DZA65_RS03390 0.62 -0.2 718,704 + DZA65_RS03390 0.63 +1.2 718,704 + DZA65_RS03390 0.63 +0.5 718,705 - DZA65_RS03390 0.63 +0.1 718,707 + DZA65_RS03390 0.63 +1.2 718,707 + DZA65_RS03390 0.63 -2.1 718,708 - DZA65_RS03390 0.63 -0.5 718,767 + DZA65_RS03390 0.69 -0.4 718,767 + DZA65_RS03390 0.69 +0.9 718,767 + DZA65_RS03390 0.69 +2.5 718,768 - DZA65_RS03390 0.69 -0.2 718,768 - DZA65_RS03390 0.69 +1.1 718,878 - DZA65_RS03390 0.80 -0.1 718,878 - DZA65_RS03390 0.80 -0.5 718,894 + DZA65_RS03390 0.82 +1.2 718,895 - DZA65_RS03390 0.82 +2.5 718,895 - +0.5 718,905 + DZA65_RS03390 0.83 +0.1 718,905 + DZA65_RS03390 0.83 -1.1 718,905 + DZA65_RS03390 0.83 -0.2 718,905 + DZA65_RS03390 0.83 -0.3 718,905 + DZA65_RS03390 0.83 -2.7 718,905 + DZA65_RS03390 0.83 -0.6 718,905 + DZA65_RS03390 0.83 -0.1 718,905 + DZA65_RS03390 0.83 -0.3 718,905 + DZA65_RS03390 0.83 +0.2 718,906 - DZA65_RS03390 0.83 -0.6 718,906 - DZA65_RS03390 0.83 +0.7 718,906 - DZA65_RS03390 0.83 +0.9 718,906 - DZA65_RS03390 0.83 +0.2 718,906 - DZA65_RS03390 0.83 -0.6 718,909 + DZA65_RS03390 0.83 +0.0 718,909 + DZA65_RS03390 0.83 +1.1 718,909 + DZA65_RS03390 0.83 -0.2 718,909 + +0.5 718,910 - DZA65_RS03390 0.83 +0.6 718,910 - DZA65_RS03390 0.83 +0.3 718,910 - DZA65_RS03390 0.83 +0.9 718,910 - DZA65_RS03390 0.83 -1.4 718,995 + +0.5 718,995 + -0.9 718,995 + +0.3 718,996 - +0.4
Or see this region's nucleotide sequence