Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03355 and DZA65_RS03360 are separated by 340 nucleotides DZA65_RS03360 and DZA65_RS03365 overlap by 8 nucleotides
DZA65_RS03355: DZA65_RS03355 - hypothetical protein, at 709,202 to 709,573
_RS03355
DZA65_RS03360: DZA65_RS03360 - restriction endonuclease subunit S, at 709,914 to 711,028
_RS03360
DZA65_RS03365: DZA65_RS03365 - SAM-dependent DNA methyltransferase, at 711,021 to 712,655
_RS03365
Position (kb) 709
710
711
712 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 709.029 kb on + strand at 709.030 kb on - strand at 709.038 kb on + strand at 709.038 kb on + strand at 709.137 kb on - strand at 709.245 kb on - strand, within DZA65_RS03355 at 709.284 kb on + strand, within DZA65_RS03355 at 709.284 kb on + strand, within DZA65_RS03355 at 709.285 kb on - strand, within DZA65_RS03355 at 709.491 kb on + strand, within DZA65_RS03355 at 709.537 kb on + strand at 709.537 kb on + strand at 709.538 kb on - strand at 709.538 kb on - strand at 709.542 kb on - strand at 709.574 kb on - strand at 709.588 kb on + strand at 709.588 kb on + strand at 709.588 kb on + strand at 709.589 kb on - strand at 709.667 kb on - strand at 709.719 kb on + strand at 709.719 kb on + strand at 709.720 kb on - strand at 709.720 kb on - strand at 709.737 kb on - strand at 709.771 kb on + strand at 709.776 kb on + strand at 709.776 kb on + strand at 709.776 kb on + strand at 709.776 kb on + strand at 709.776 kb on + strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.777 kb on - strand at 709.778 kb on + strand at 709.778 kb on + strand at 709.779 kb on - strand at 709.779 kb on - strand at 709.779 kb on - strand at 709.829 kb on + strand at 709.829 kb on + strand at 709.830 kb on - strand at 709.915 kb on + strand at 709.915 kb on + strand at 709.916 kb on - strand at 709.916 kb on - strand at 709.916 kb on - strand at 709.916 kb on - strand at 709.975 kb on - strand at 709.995 kb on + strand at 710.013 kb on - strand at 710.029 kb on + strand, within DZA65_RS03360 at 710.030 kb on - strand, within DZA65_RS03360 at 710.030 kb on - strand, within DZA65_RS03360 at 710.047 kb on - strand, within DZA65_RS03360 at 710.063 kb on + strand, within DZA65_RS03360 at 710.064 kb on - strand, within DZA65_RS03360 at 710.067 kb on + strand, within DZA65_RS03360 at 710.068 kb on - strand, within DZA65_RS03360 at 710.068 kb on - strand, within DZA65_RS03360 at 710.117 kb on + strand, within DZA65_RS03360 at 710.117 kb on + strand, within DZA65_RS03360 at 710.174 kb on + strand, within DZA65_RS03360 at 710.207 kb on - strand, within DZA65_RS03360 at 710.253 kb on - strand, within DZA65_RS03360 at 710.256 kb on + strand, within DZA65_RS03360 at 710.299 kb on - strand, within DZA65_RS03360 at 710.303 kb on - strand, within DZA65_RS03360 at 710.320 kb on - strand, within DZA65_RS03360 at 710.340 kb on + strand, within DZA65_RS03360 at 710.341 kb on - strand, within DZA65_RS03360 at 710.412 kb on + strand, within DZA65_RS03360 at 710.462 kb on + strand, within DZA65_RS03360 at 710.463 kb on - strand, within DZA65_RS03360 at 710.463 kb on - strand, within DZA65_RS03360 at 710.464 kb on + strand, within DZA65_RS03360 at 710.465 kb on - strand, within DZA65_RS03360 at 710.492 kb on - strand, within DZA65_RS03360 at 710.537 kb on - strand, within DZA65_RS03360 at 710.543 kb on - strand, within DZA65_RS03360 at 710.642 kb on + strand, within DZA65_RS03360 at 710.643 kb on - strand, within DZA65_RS03360 at 710.654 kb on + strand, within DZA65_RS03360 at 710.654 kb on + strand, within DZA65_RS03360 at 710.654 kb on + strand, within DZA65_RS03360 at 710.655 kb on - strand, within DZA65_RS03360 at 710.655 kb on - strand, within DZA65_RS03360 at 710.655 kb on - strand, within DZA65_RS03360 at 710.743 kb on + strand, within DZA65_RS03360 at 710.743 kb on + strand, within DZA65_RS03360 at 710.751 kb on + strand, within DZA65_RS03360 at 710.752 kb on - strand, within DZA65_RS03360 at 710.760 kb on + strand, within DZA65_RS03360 at 710.761 kb on - strand, within DZA65_RS03360 at 710.794 kb on - strand, within DZA65_RS03360 at 710.794 kb on - strand, within DZA65_RS03360 at 710.794 kb on - strand, within DZA65_RS03360 at 710.796 kb on - strand, within DZA65_RS03360 at 710.837 kb on + strand, within DZA65_RS03360 at 710.838 kb on - strand, within DZA65_RS03360 at 710.852 kb on - strand, within DZA65_RS03360 at 710.868 kb on - strand, within DZA65_RS03360 at 710.870 kb on - strand, within DZA65_RS03360 at 710.886 kb on - strand, within DZA65_RS03360 at 710.886 kb on - strand, within DZA65_RS03360 at 710.886 kb on - strand, within DZA65_RS03360 at 710.927 kb on + strand at 710.928 kb on - strand at 711.023 kb on - strand at 711.028 kb on + strand at 711.029 kb on - strand at 711.087 kb on + strand at 711.087 kb on + strand at 711.221 kb on - strand, within DZA65_RS03365 at 711.221 kb on - strand, within DZA65_RS03365 at 711.263 kb on + strand, within DZA65_RS03365 at 711.263 kb on + strand, within DZA65_RS03365 at 711.264 kb on - strand, within DZA65_RS03365 at 711.377 kb on + strand, within DZA65_RS03365 at 711.497 kb on + strand, within DZA65_RS03365 at 711.498 kb on - strand, within DZA65_RS03365 at 711.521 kb on + strand, within DZA65_RS03365 at 711.572 kb on - strand, within DZA65_RS03365 at 711.575 kb on + strand, within DZA65_RS03365 at 711.575 kb on + strand, within DZA65_RS03365 at 711.575 kb on + strand, within DZA65_RS03365 at 711.575 kb on + strand, within DZA65_RS03365 at 711.575 kb on + strand, within DZA65_RS03365 at 711.575 kb on + strand, within DZA65_RS03365 at 711.575 kb on + strand, within DZA65_RS03365 at 711.576 kb on - strand, within DZA65_RS03365 at 711.576 kb on - strand, within DZA65_RS03365 at 711.576 kb on - strand, within DZA65_RS03365 at 711.598 kb on + strand, within DZA65_RS03365 at 711.598 kb on + strand, within DZA65_RS03365 at 711.612 kb on - strand, within DZA65_RS03365 at 711.711 kb on - strand, within DZA65_RS03365 at 711.731 kb on + strand, within DZA65_RS03365 at 711.731 kb on + strand, within DZA65_RS03365 at 711.732 kb on - strand, within DZA65_RS03365 at 711.732 kb on - strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.733 kb on + strand, within DZA65_RS03365 at 711.734 kb on - strand, within DZA65_RS03365 at 711.734 kb on - strand at 711.734 kb on - strand, within DZA65_RS03365 at 711.734 kb on - strand, within DZA65_RS03365 at 711.770 kb on - strand, within DZA65_RS03365 at 711.802 kb on + strand, within DZA65_RS03365 at 711.803 kb on - strand, within DZA65_RS03365 at 711.803 kb on - strand at 711.803 kb on - strand, within DZA65_RS03365 at 711.803 kb on - strand, within DZA65_RS03365 at 711.824 kb on + strand, within DZA65_RS03365 at 711.825 kb on - strand, within DZA65_RS03365 at 711.958 kb on + strand, within DZA65_RS03365 at 712.017 kb on - strand, within DZA65_RS03365
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 708,973 + +0.5 708,973 + -1.1 708,973 + +1.5 708,973 + +0.7 708,973 + +0.0 708,973 + -1.1 708,973 + +0.0 708,973 + +1.5 708,973 + +0.9 708,973 + +0.2 708,973 + -2.0 708,973 + +0.3 708,973 + +1.5 708,973 + +0.3 708,973 + -0.3 708,974 - +0.5 708,974 - +1.3 708,974 - +1.1 708,974 - -0.6 708,974 - -1.1 708,974 - -0.3 708,974 - -0.2 708,974 - +0.9 709,029 + -1.5 709,030 - +0.8 709,038 + +0.1 709,038 + -0.5 709,137 - +0.0 709,245 - DZA65_RS03355 0.12 +0.4 709,284 + DZA65_RS03355 0.22 -1.4 709,284 + DZA65_RS03355 0.22 -1.1 709,285 - DZA65_RS03355 0.22 +0.2 709,491 + DZA65_RS03355 0.78 -0.5 709,537 + +1.3 709,537 + +0.5 709,538 - +0.2 709,538 - -1.8 709,542 - -0.5 709,574 - +0.7 709,588 + +0.1 709,588 + +0.5 709,588 + -1.5 709,589 - +0.0 709,667 - +0.3 709,719 + +2.1 709,719 + +0.4 709,720 - -2.1 709,720 - -1.4 709,737 - +0.5 709,771 + -1.3 709,776 + -0.6 709,776 + -0.7 709,776 + +1.1 709,776 + -0.3 709,776 + -0.2 709,777 - +0.1 709,777 - +1.2 709,777 - -0.2 709,777 - +0.3 709,777 - -0.6 709,777 - +0.8 709,777 - +0.1 709,778 + -0.5 709,778 + +0.0 709,779 - +1.1 709,779 - -0.2 709,779 - +0.7 709,829 + -0.5 709,829 + -0.3 709,830 - -0.3 709,915 + -0.5 709,915 + -0.5 709,916 - -2.1 709,916 - -1.1 709,916 - -0.8 709,916 - -0.9 709,975 - +0.2 709,995 + -0.5 710,013 - -0.1 710,029 + DZA65_RS03360 0.10 -1.8 710,030 - DZA65_RS03360 0.10 -3.7 710,030 - DZA65_RS03360 0.10 -0.6 710,047 - DZA65_RS03360 0.12 -0.4 710,063 + DZA65_RS03360 0.13 -1.3 710,064 - DZA65_RS03360 0.13 -0.1 710,067 + DZA65_RS03360 0.14 -0.2 710,068 - DZA65_RS03360 0.14 -1.7 710,068 - DZA65_RS03360 0.14 -0.7 710,117 + DZA65_RS03360 0.18 -1.5 710,117 + DZA65_RS03360 0.18 -1.3 710,174 + DZA65_RS03360 0.23 +0.5 710,207 - DZA65_RS03360 0.26 +0.0 710,253 - DZA65_RS03360 0.30 -0.8 710,256 + DZA65_RS03360 0.31 -1.5 710,299 - DZA65_RS03360 0.35 -0.6 710,303 - DZA65_RS03360 0.35 -1.1 710,320 - DZA65_RS03360 0.36 -0.6 710,340 + DZA65_RS03360 0.38 -1.8 710,341 - DZA65_RS03360 0.38 +0.8 710,412 + DZA65_RS03360 0.45 -0.7 710,462 + DZA65_RS03360 0.49 +0.9 710,463 - DZA65_RS03360 0.49 +0.5 710,463 - DZA65_RS03360 0.49 +0.5 710,464 + DZA65_RS03360 0.49 -1.5 710,465 - DZA65_RS03360 0.49 -0.7 710,492 - DZA65_RS03360 0.52 +0.2 710,537 - DZA65_RS03360 0.56 -2.3 710,543 - DZA65_RS03360 0.56 +0.2 710,642 + DZA65_RS03360 0.65 +0.1 710,643 - DZA65_RS03360 0.65 +0.3 710,654 + DZA65_RS03360 0.66 -0.7 710,654 + DZA65_RS03360 0.66 -1.0 710,654 + DZA65_RS03360 0.66 -1.0 710,655 - DZA65_RS03360 0.66 +0.0 710,655 - DZA65_RS03360 0.66 +0.9 710,655 - DZA65_RS03360 0.66 -0.6 710,743 + DZA65_RS03360 0.74 -0.5 710,743 + DZA65_RS03360 0.74 -0.3 710,751 + DZA65_RS03360 0.75 -0.8 710,752 - DZA65_RS03360 0.75 -0.5 710,760 + DZA65_RS03360 0.76 +0.6 710,761 - DZA65_RS03360 0.76 -0.2 710,794 - DZA65_RS03360 0.79 -0.8 710,794 - DZA65_RS03360 0.79 +0.2 710,794 - DZA65_RS03360 0.79 +0.6 710,796 - DZA65_RS03360 0.79 -0.4 710,837 + DZA65_RS03360 0.83 -2.0 710,838 - DZA65_RS03360 0.83 -0.3 710,852 - DZA65_RS03360 0.84 -0.2 710,868 - DZA65_RS03360 0.86 -0.7 710,870 - DZA65_RS03360 0.86 -0.2 710,886 - DZA65_RS03360 0.87 +0.5 710,886 - DZA65_RS03360 0.87 +0.5 710,886 - DZA65_RS03360 0.87 +0.7 710,927 + +0.1 710,928 - -0.2 711,023 - +0.4 711,028 + -0.3 711,029 - -0.8 711,087 + -0.5 711,087 + -0.1 711,221 - DZA65_RS03365 0.12 -0.8 711,221 - DZA65_RS03365 0.12 +0.4 711,263 + DZA65_RS03365 0.15 +0.1 711,263 + DZA65_RS03365 0.15 -0.2 711,264 - DZA65_RS03365 0.15 -1.5 711,377 + DZA65_RS03365 0.22 +0.5 711,497 + DZA65_RS03365 0.29 +0.7 711,498 - DZA65_RS03365 0.29 +0.7 711,521 + DZA65_RS03365 0.31 -0.8 711,572 - DZA65_RS03365 0.34 +0.7 711,575 + DZA65_RS03365 0.34 +1.0 711,575 + DZA65_RS03365 0.34 -0.3 711,575 + DZA65_RS03365 0.34 -1.3 711,575 + DZA65_RS03365 0.34 +0.1 711,575 + DZA65_RS03365 0.34 -1.1 711,575 + DZA65_RS03365 0.34 +0.1 711,575 + DZA65_RS03365 0.34 +1.0 711,576 - DZA65_RS03365 0.34 +0.2 711,576 - DZA65_RS03365 0.34 -0.5 711,576 - DZA65_RS03365 0.34 +0.5 711,598 + DZA65_RS03365 0.35 -0.7 711,598 + DZA65_RS03365 0.35 +0.3 711,612 - DZA65_RS03365 0.36 -0.2 711,711 - DZA65_RS03365 0.42 -1.5 711,731 + DZA65_RS03365 0.43 -0.4 711,731 + DZA65_RS03365 0.43 +0.5 711,732 - DZA65_RS03365 0.43 +0.3 711,732 - DZA65_RS03365 0.43 +0.7 711,733 + DZA65_RS03365 0.44 -1.1 711,733 + DZA65_RS03365 0.44 +0.4 711,733 + DZA65_RS03365 0.44 -1.5 711,733 + DZA65_RS03365 0.44 -0.5 711,733 + DZA65_RS03365 0.44 +0.5 711,733 + DZA65_RS03365 0.44 +1.1 711,733 + DZA65_RS03365 0.44 +0.1 711,733 + DZA65_RS03365 0.44 -1.8 711,733 + DZA65_RS03365 0.44 -1.2 711,733 + DZA65_RS03365 0.44 -0.5 711,733 + DZA65_RS03365 0.44 -2.5 711,734 - DZA65_RS03365 0.44 +0.1 711,734 - +1.8 711,734 - DZA65_RS03365 0.44 -0.6 711,734 - DZA65_RS03365 0.44 +0.8 711,770 - DZA65_RS03365 0.46 +1.8 711,802 + DZA65_RS03365 0.48 +0.9 711,803 - DZA65_RS03365 0.48 -0.5 711,803 - +1.2 711,803 - DZA65_RS03365 0.48 -1.1 711,803 - DZA65_RS03365 0.48 -0.8 711,824 + DZA65_RS03365 0.49 +0.7 711,825 - DZA65_RS03365 0.49 -1.8 711,958 + DZA65_RS03365 0.57 -0.2 712,017 - DZA65_RS03365 0.61 +0.5
Or see this region's nucleotide sequence