Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02260

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02250 and DZA65_RS02255 are separated by 13 nucleotidesDZA65_RS02255 and DZA65_RS02260 are separated by 94 nucleotidesDZA65_RS02260 and DZA65_RS02265 are separated by 44 nucleotidesDZA65_RS02265 and DZA65_RS02270 are separated by 35 nucleotides DZA65_RS02250: DZA65_RS02250 - transketolase, at 488,567 to 489,487 _RS02250 DZA65_RS02255: DZA65_RS02255 - D-threitol dehydrogenase, at 489,501 to 490,304 _RS02255 DZA65_RS02260: DZA65_RS02260 - substrate-binding domain-containing protein, at 490,399 to 491,334 _RS02260 DZA65_RS02265: DZA65_RS02265 - DUF2291 domain-containing protein, at 491,379 to 492,002 _RS02265 DZA65_RS02270: DZA65_RS02270 - sugar ABC transporter ATP-binding protein, at 492,038 to 493,600 _RS02270 Position (kb) 490 491 492Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 489.452 kb on - strandat 489.452 kb on - strandat 489.519 kb on + strandat 489.519 kb on + strandat 489.519 kb on + strandat 489.520 kb on - strandat 489.520 kb on - strandat 489.528 kb on - strandat 489.660 kb on + strand, within DZA65_RS02255at 489.661 kb on - strand, within DZA65_RS02255at 489.792 kb on + strand, within DZA65_RS02255at 489.802 kb on + strand, within DZA65_RS02255at 489.966 kb on - strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.097 kb on + strand, within DZA65_RS02255at 490.097 kb on + strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.200 kb on + strand, within DZA65_RS02255at 490.201 kb on - strand, within DZA65_RS02255at 490.312 kb on - strandat 490.383 kb on + strandat 490.422 kb on - strandat 490.513 kb on + strand, within DZA65_RS02260at 490.513 kb on + strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.567 kb on - strand, within DZA65_RS02260at 490.567 kb on - strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.644 kb on - strand, within DZA65_RS02260at 490.644 kb on - strand, within DZA65_RS02260at 490.775 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.866 kb on + strand, within DZA65_RS02260at 490.866 kb on + strand, within DZA65_RS02260at 490.867 kb on - strand, within DZA65_RS02260at 490.927 kb on + strand, within DZA65_RS02260at 490.928 kb on - strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.474 kb on + strand, within DZA65_RS02265at 491.744 kb on - strand, within DZA65_RS02265at 491.787 kb on + strand, within DZA65_RS02265at 491.787 kb on + strand, within DZA65_RS02265at 491.787 kb on + strand, within DZA65_RS02265at 491.787 kb on + strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.789 kb on + strand, within DZA65_RS02265at 491.790 kb on - strand, within DZA65_RS02265at 491.790 kb on - strand, within DZA65_RS02265at 491.802 kb on + strand, within DZA65_RS02265at 491.803 kb on - strand, within DZA65_RS02265at 491.830 kb on - strand, within DZA65_RS02265at 491.830 kb on - strand, within DZA65_RS02265at 491.830 kb on - strandat 491.830 kb on - strand, within DZA65_RS02265at 491.931 kb on - strand, within DZA65_RS02265at 492.010 kb on + strandat 492.011 kb on - strandat 492.019 kb on - strandat 492.167 kb on + strandat 492.167 kb on + strandat 492.168 kb on - strandat 492.176 kb on + strandat 492.176 kb on + strandat 492.176 kb on + strandat 492.176 kb on + strandat 492.177 kb on - strandat 492.220 kb on + strand, within DZA65_RS02270at 492.220 kb on + strand, within DZA65_RS02270at 492.220 kb on + strand, within DZA65_RS02270at 492.221 kb on - strand, within DZA65_RS02270

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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489,452 - -0.4
489,452 - -0.4
489,519 + +0.8
489,519 + -0.1
489,519 + +0.0
489,520 - +0.9
489,520 - +0.2
489,528 - +0.3
489,660 + DZA65_RS02255 0.20 +0.1
489,661 - DZA65_RS02255 0.20 -0.9
489,792 + DZA65_RS02255 0.36 +0.7
489,802 + DZA65_RS02255 0.37 +0.8
489,966 - DZA65_RS02255 0.58 +0.6
490,017 + DZA65_RS02255 0.64 -0.0
490,017 + DZA65_RS02255 0.64 -1.0
490,017 + DZA65_RS02255 0.64 +1.5
490,017 + DZA65_RS02255 0.64 +1.1
490,018 - DZA65_RS02255 0.64 +0.2
490,018 - DZA65_RS02255 0.64 +0.1
490,018 - DZA65_RS02255 0.64 +0.5
490,018 - DZA65_RS02255 0.64 +0.2
490,018 - DZA65_RS02255 0.64 +0.7
490,097 + DZA65_RS02255 0.74 +0.5
490,097 + DZA65_RS02255 0.74 -0.5
490,098 - DZA65_RS02255 0.74 +0.2
490,098 - DZA65_RS02255 0.74 -1.0
490,098 - DZA65_RS02255 0.74 -0.5
490,200 + DZA65_RS02255 0.87 -0.0
490,201 - DZA65_RS02255 0.87 -0.0
490,312 - +1.0
490,383 + -0.2
490,422 - +0.1
490,513 + DZA65_RS02260 0.12 -0.8
490,513 + DZA65_RS02260 0.12 +0.7
490,514 - DZA65_RS02260 0.12 +0.2
490,514 - DZA65_RS02260 0.12 -0.8
490,514 - DZA65_RS02260 0.12 +0.1
490,514 - DZA65_RS02260 0.12 -0.2
490,514 - DZA65_RS02260 0.12 -1.1
490,516 + DZA65_RS02260 0.12 -1.0
490,516 + DZA65_RS02260 0.12 -1.3
490,516 + DZA65_RS02260 0.12 +0.1
490,516 + DZA65_RS02260 0.12 -0.5
490,516 + DZA65_RS02260 0.12 +0.2
490,517 - DZA65_RS02260 0.13 -1.0
490,517 - DZA65_RS02260 0.13 -1.3
490,517 - DZA65_RS02260 0.13 +0.4
490,566 + DZA65_RS02260 0.18 +0.4
490,566 + DZA65_RS02260 0.18 -1.8
490,566 + DZA65_RS02260 0.18 -1.5
490,566 + DZA65_RS02260 0.18 +0.5
490,567 - DZA65_RS02260 0.18 -2.3
490,567 - DZA65_RS02260 0.18 -0.7
490,643 + DZA65_RS02260 0.26 -0.3
490,643 + DZA65_RS02260 0.26 -0.5
490,643 + DZA65_RS02260 0.26 -2.5
490,644 - DZA65_RS02260 0.26 -3.3
490,644 - DZA65_RS02260 0.26 -1.6
490,775 + DZA65_RS02260 0.40 -2.3
490,849 + DZA65_RS02260 0.48 -2.9
490,849 + DZA65_RS02260 0.48 -0.0
490,849 + DZA65_RS02260 0.48 -0.6
490,849 + DZA65_RS02260 0.48 -0.3
490,849 + DZA65_RS02260 0.48 -0.4
490,849 + DZA65_RS02260 0.48 +1.5
490,849 + DZA65_RS02260 0.48 -0.1
490,850 - DZA65_RS02260 0.48 +0.5
490,850 - DZA65_RS02260 0.48 +0.5
490,850 - DZA65_RS02260 0.48 -2.9
490,866 + DZA65_RS02260 0.50 -0.8
490,866 + DZA65_RS02260 0.50 +0.5
490,867 - DZA65_RS02260 0.50 -0.8
490,927 + DZA65_RS02260 0.56 -0.3
490,928 - DZA65_RS02260 0.57 -0.5
491,227 + DZA65_RS02260 0.88 -0.3
491,227 + DZA65_RS02260 0.88 -0.3
491,227 + DZA65_RS02260 0.88 -0.0
491,227 + DZA65_RS02260 0.88 +0.2
491,227 + DZA65_RS02260 0.88 -0.6
491,227 + DZA65_RS02260 0.88 -1.5
491,227 + DZA65_RS02260 0.88 -0.7
491,227 + DZA65_RS02260 0.88 +0.5
491,227 + DZA65_RS02260 0.88 +1.5
491,227 + DZA65_RS02260 0.88 -0.1
491,227 + DZA65_RS02260 0.88 -0.9
491,227 + DZA65_RS02260 0.88 +0.3
491,228 - DZA65_RS02260 0.89 -0.8
491,228 - DZA65_RS02260 0.89 +0.4
491,228 - DZA65_RS02260 0.89 +1.1
491,228 - DZA65_RS02260 0.89 +0.5
491,228 - DZA65_RS02260 0.89 +0.4
491,228 - DZA65_RS02260 0.89 +1.0
491,378 + +1.9
491,378 + +0.2
491,378 + +0.0
491,378 + -0.5
491,378 + -0.6
491,378 + +0.1
491,378 + +0.5
491,378 + -3.4
491,378 + -2.3
491,378 + -2.2
491,378 + -0.1
491,378 + -1.5
491,378 + -0.5
491,378 + -1.8
491,378 + -2.0
491,378 + -1.7
491,379 - -3.0
491,379 - -1.3
491,379 - -0.1
491,379 - -0.2
491,379 - +0.3
491,379 - +1.1
491,379 - +0.4
491,379 - +1.0
491,379 - -1.8
491,379 - +0.3
491,379 - +0.1
491,379 - -0.1
491,474 + DZA65_RS02265 0.15 +1.0
491,744 - DZA65_RS02265 0.58 -0.8
491,787 + DZA65_RS02265 0.65 +0.3
491,787 + DZA65_RS02265 0.65 +0.4
491,787 + DZA65_RS02265 0.65 -0.2
491,787 + DZA65_RS02265 0.65 -0.5
491,788 - DZA65_RS02265 0.66 +0.1
491,788 - DZA65_RS02265 0.66 +0.1
491,788 - DZA65_RS02265 0.66 -1.8
491,788 - DZA65_RS02265 0.66 +1.0
491,788 - DZA65_RS02265 0.66 -0.5
491,789 + DZA65_RS02265 0.66 +1.5
491,790 - DZA65_RS02265 0.66 +1.2
491,790 - DZA65_RS02265 0.66 -0.4
491,802 + DZA65_RS02265 0.68 -1.1
491,803 - DZA65_RS02265 0.68 -1.0
491,830 - DZA65_RS02265 0.72 -2.0
491,830 - DZA65_RS02265 0.72 -1.0
491,830 - +0.5
491,830 - DZA65_RS02265 0.72 +0.2
491,931 - DZA65_RS02265 0.88 +0.2
492,010 + +0.3
492,011 - +0.5
492,019 - -0.2
492,167 + +0.5
492,167 + +1.5
492,168 - -0.6
492,176 + +1.1
492,176 + -1.9
492,176 + +0.3
492,176 + +0.8
492,177 - -0.2
492,220 + DZA65_RS02270 0.12 +0.2
492,220 + DZA65_RS02270 0.12 +0.3
492,220 + DZA65_RS02270 0.12 +1.3
492,221 - DZA65_RS02270 0.12 +0.8

Or see this region's nucleotide sequence