Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01670 and DZA65_RS01675 are separated by 73 nucleotides DZA65_RS01675 and DZA65_RS01680 overlap by 43 nucleotides DZA65_RS01680 and DZA65_RS01685 are separated by 59 nucleotides
DZA65_RS01670: DZA65_RS01670 - DnaA initiator-associating protein DiaA, at 363,798 to 364,388
_RS01670
DZA65_RS01675: DZA65_RS01675 - YraN family protein, at 364,462 to 364,857
_RS01675
DZA65_RS01680: DZA65_RS01680 - penicillin-binding protein activator, at 364,815 to 366,866
_RS01680
DZA65_RS01685: DZA65_RS01685 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 366,926 to 367,795
_RS01685
Position (kb) 364
365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 363.827 kb on + strand at 363.828 kb on - strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.835 kb on - strand at 363.863 kb on + strand, within DZA65_RS01670 at 363.863 kb on + strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.955 kb on + strand, within DZA65_RS01670 at 364.093 kb on + strand, within DZA65_RS01670 at 364.142 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.152 kb on - strand, within DZA65_RS01670 at 364.152 kb on - strand, within DZA65_RS01670 at 364.172 kb on + strand, within DZA65_RS01670 at 364.172 kb on + strand, within DZA65_RS01670 at 364.202 kb on + strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.373 kb on + strand at 364.373 kb on + strand at 364.374 kb on - strand at 364.374 kb on - strand at 364.374 kb on - strand at 364.407 kb on + strand at 364.408 kb on - strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.440 kb on - strand at 364.440 kb on - strand at 364.451 kb on + strand at 364.452 kb on - strand at 364.452 kb on - strand at 364.464 kb on - strand at 364.620 kb on + strand, within DZA65_RS01675 at 364.620 kb on + strand, within DZA65_RS01675 at 364.651 kb on - strand, within DZA65_RS01675 at 364.698 kb on + strand, within DZA65_RS01675 at 364.699 kb on - strand, within DZA65_RS01675 at 364.699 kb on - strand, within DZA65_RS01675 at 364.723 kb on + strand, within DZA65_RS01675 at 364.866 kb on - strand at 364.896 kb on - strand at 364.896 kb on - strand at 365.005 kb on + strand at 365.005 kb on + strand at 365.006 kb on - strand at 365.006 kb on - strand at 365.079 kb on - strand, within DZA65_RS01680 at 365.132 kb on - strand, within DZA65_RS01680 at 365.132 kb on - strand, within DZA65_RS01680 at 365.150 kb on - strand, within DZA65_RS01680 at 365.231 kb on + strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.233 kb on + strand, within DZA65_RS01680 at 365.233 kb on + strand, within DZA65_RS01680 at 365.233 kb on + strand, within DZA65_RS01680 at 365.233 kb on + strand, within DZA65_RS01680 at 365.234 kb on - strand, within DZA65_RS01680 at 365.234 kb on - strand, within DZA65_RS01680 at 365.234 kb on - strand at 365.234 kb on - strand, within DZA65_RS01680 at 365.234 kb on - strand, within DZA65_RS01680 at 365.234 kb on - strand, within DZA65_RS01680 at 365.267 kb on + strand, within DZA65_RS01680 at 365.267 kb on + strand, within DZA65_RS01680 at 365.267 kb on + strand, within DZA65_RS01680 at 365.267 kb on + strand, within DZA65_RS01680 at 365.268 kb on - strand, within DZA65_RS01680 at 365.268 kb on - strand, within DZA65_RS01680 at 365.268 kb on - strand, within DZA65_RS01680 at 365.268 kb on - strand, within DZA65_RS01680 at 365.404 kb on + strand, within DZA65_RS01680 at 365.405 kb on - strand, within DZA65_RS01680 at 365.405 kb on - strand, within DZA65_RS01680 at 365.591 kb on - strand, within DZA65_RS01680 at 365.744 kb on + strand, within DZA65_RS01680 at 365.770 kb on + strand, within DZA65_RS01680 at 365.771 kb on - strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.882 kb on + strand, within DZA65_RS01680 at 365.883 kb on - strand, within DZA65_RS01680 at 366.186 kb on + strand, within DZA65_RS01680 at 366.186 kb on + strand, within DZA65_RS01680 at 366.187 kb on - strand, within DZA65_RS01680 at 366.187 kb on - strand, within DZA65_RS01680 at 366.206 kb on + strand, within DZA65_RS01680 at 366.207 kb on - strand, within DZA65_RS01680 at 366.263 kb on + strand, within DZA65_RS01680 at 366.263 kb on + strand, within DZA65_RS01680 at 366.264 kb on - strand, within DZA65_RS01680 at 366.264 kb on - strand, within DZA65_RS01680 at 366.318 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.389 kb on - strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.448 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.661 kb on - strand at 366.661 kb on - strand at 366.661 kb on - strand at 366.661 kb on - strand at 366.679 kb on + strand at 366.680 kb on + strand at 366.680 kb on + strand at 366.680 kb on + strand at 366.681 kb on - strand at 366.712 kb on + strand at 366.712 kb on + strand at 366.713 kb on - strand at 366.713 kb on - strand at 366.713 kb on - strand at 366.716 kb on - strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.745 kb on - strand at 366.745 kb on - strand at 366.745 kb on - strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.871 kb on + strand at 366.872 kb on - strand at 366.872 kb on - strand at 366.887 kb on - strand at 366.899 kb on + strand at 366.900 kb on - strand at 366.902 kb on + strand at 366.902 kb on + strand at 366.902 kb on + strand at 366.903 kb on - strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 367.045 kb on + strand, within DZA65_RS01685 at 367.077 kb on + strand, within DZA65_RS01685 at 367.084 kb on - strand, within DZA65_RS01685 at 367.084 kb on - strand, within DZA65_RS01685 at 367.099 kb on + strand, within DZA65_RS01685 at 367.099 kb on + strand, within DZA65_RS01685 at 367.346 kb on + strand, within DZA65_RS01685 at 367.346 kb on + strand, within DZA65_RS01685 at 367.347 kb on - strand, within DZA65_RS01685 at 367.381 kb on + strand, within DZA65_RS01685 at 367.381 kb on + strand, within DZA65_RS01685 at 367.388 kb on - strand, within DZA65_RS01685 at 367.456 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.542 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.794 kb on - strand at 367.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 363,827 + -0.4 363,828 - +1.7 363,834 + -0.0 363,834 + +0.3 363,834 + +0.5 363,834 + -1.6 363,834 + +1.3 363,834 + -2.0 363,835 - -1.0 363,863 + DZA65_RS01670 0.11 +0.7 363,863 + DZA65_RS01670 0.11 +2.3 363,864 - DZA65_RS01670 0.11 +1.3 363,864 - DZA65_RS01670 0.11 +1.3 363,864 - DZA65_RS01670 0.11 +0.3 363,864 - DZA65_RS01670 0.11 +1.8 363,864 - DZA65_RS01670 0.11 +3.0 363,864 - DZA65_RS01670 0.11 +0.9 363,955 + DZA65_RS01670 0.27 +0.9 364,093 + DZA65_RS01670 0.50 +1.0 364,142 + DZA65_RS01670 0.58 -0.2 364,151 + DZA65_RS01670 0.60 +0.6 364,151 + DZA65_RS01670 0.60 +0.1 364,151 + DZA65_RS01670 0.60 +1.3 364,152 - DZA65_RS01670 0.60 +0.1 364,152 - DZA65_RS01670 0.60 +1.8 364,172 + DZA65_RS01670 0.63 +0.6 364,172 + DZA65_RS01670 0.63 -0.0 364,202 + DZA65_RS01670 0.68 -0.1 364,203 - DZA65_RS01670 0.69 +1.4 364,203 - DZA65_RS01670 0.69 +0.4 364,203 - DZA65_RS01670 0.69 +0.2 364,373 + +1.3 364,373 + +1.5 364,374 - +0.6 364,374 - +3.0 364,374 - +1.8 364,407 + +0.7 364,408 - +1.1 364,439 + +1.1 364,439 + -2.2 364,439 + +0.3 364,439 + +0.8 364,440 - -0.1 364,440 - -1.2 364,451 + -1.0 364,452 - +0.1 364,452 - +1.0 364,464 - -0.1 364,620 + DZA65_RS01675 0.40 +0.3 364,620 + DZA65_RS01675 0.40 -1.5 364,651 - DZA65_RS01675 0.48 -0.2 364,698 + DZA65_RS01675 0.60 +0.6 364,699 - DZA65_RS01675 0.60 +0.6 364,699 - DZA65_RS01675 0.60 +0.8 364,723 + DZA65_RS01675 0.66 -0.3 364,866 - -1.0 364,896 - -2.2 364,896 - -1.4 365,005 + -0.3 365,005 + +0.1 365,006 - -0.3 365,006 - -1.1 365,079 - DZA65_RS01680 0.13 +0.2 365,132 - DZA65_RS01680 0.15 +0.6 365,132 - DZA65_RS01680 0.15 +0.9 365,150 - DZA65_RS01680 0.16 -0.9 365,231 + DZA65_RS01680 0.20 -0.4 365,232 - DZA65_RS01680 0.20 -0.3 365,232 - DZA65_RS01680 0.20 -1.3 365,232 - DZA65_RS01680 0.20 -0.4 365,232 - DZA65_RS01680 0.20 +1.1 365,232 - DZA65_RS01680 0.20 -1.8 365,233 + DZA65_RS01680 0.20 -0.4 365,233 + DZA65_RS01680 0.20 -0.2 365,233 + DZA65_RS01680 0.20 -0.7 365,233 + DZA65_RS01680 0.20 -1.4 365,234 - DZA65_RS01680 0.20 -0.8 365,234 - DZA65_RS01680 0.20 -0.4 365,234 - -1.0 365,234 - DZA65_RS01680 0.20 -1.2 365,234 - DZA65_RS01680 0.20 -2.8 365,234 - DZA65_RS01680 0.20 -0.2 365,267 + DZA65_RS01680 0.22 -1.8 365,267 + DZA65_RS01680 0.22 +0.6 365,267 + DZA65_RS01680 0.22 -1.0 365,267 + DZA65_RS01680 0.22 +0.8 365,268 - DZA65_RS01680 0.22 -0.2 365,268 - DZA65_RS01680 0.22 -0.6 365,268 - DZA65_RS01680 0.22 -1.0 365,268 - DZA65_RS01680 0.22 -2.0 365,404 + DZA65_RS01680 0.29 +0.6 365,405 - DZA65_RS01680 0.29 +0.3 365,405 - DZA65_RS01680 0.29 +1.0 365,591 - DZA65_RS01680 0.38 -3.3 365,744 + DZA65_RS01680 0.45 +1.4 365,770 + DZA65_RS01680 0.47 -0.2 365,771 - DZA65_RS01680 0.47 -0.6 365,880 + DZA65_RS01680 0.52 +0.3 365,880 + DZA65_RS01680 0.52 +0.0 365,880 + DZA65_RS01680 0.52 -1.8 365,880 + DZA65_RS01680 0.52 -2.8 365,880 + DZA65_RS01680 0.52 -0.6 365,880 + DZA65_RS01680 0.52 +0.2 365,880 + DZA65_RS01680 0.52 +0.3 365,881 - DZA65_RS01680 0.52 +0.3 365,881 - DZA65_RS01680 0.52 -0.8 365,881 - DZA65_RS01680 0.52 -1.2 365,881 - DZA65_RS01680 0.52 -0.4 365,881 - DZA65_RS01680 0.52 +1.3 365,882 + DZA65_RS01680 0.52 +0.4 365,883 - DZA65_RS01680 0.52 -0.2 366,186 + DZA65_RS01680 0.67 +0.6 366,186 + DZA65_RS01680 0.67 +1.8 366,187 - DZA65_RS01680 0.67 -0.8 366,187 - DZA65_RS01680 0.67 +0.2 366,206 + DZA65_RS01680 0.68 -1.4 366,207 - DZA65_RS01680 0.68 -0.9 366,263 + DZA65_RS01680 0.71 -0.2 366,263 + DZA65_RS01680 0.71 -1.0 366,264 - DZA65_RS01680 0.71 -0.2 366,264 - DZA65_RS01680 0.71 -2.2 366,318 + DZA65_RS01680 0.73 +0.0 366,388 + DZA65_RS01680 0.77 +0.6 366,388 + DZA65_RS01680 0.77 +0.8 366,388 + DZA65_RS01680 0.77 -1.0 366,389 - DZA65_RS01680 0.77 -1.9 366,445 + DZA65_RS01680 0.79 -2.2 366,445 + DZA65_RS01680 0.79 -0.6 366,445 + DZA65_RS01680 0.79 -0.9 366,448 + DZA65_RS01680 0.80 -2.6 366,660 + DZA65_RS01680 0.90 -1.6 366,660 + DZA65_RS01680 0.90 +0.8 366,660 + DZA65_RS01680 0.90 +0.9 366,660 + DZA65_RS01680 0.90 +0.3 366,660 + DZA65_RS01680 0.90 -0.4 366,660 + DZA65_RS01680 0.90 +0.1 366,661 - -1.6 366,661 - -0.4 366,661 - -2.8 366,661 - -0.0 366,679 + -1.8 366,680 + -0.4 366,680 + +0.1 366,680 + +0.1 366,681 - -1.0 366,712 + -0.2 366,712 + -0.9 366,713 - +0.6 366,713 - -2.4 366,713 - -1.4 366,716 - -0.1 366,744 + -2.8 366,744 + -1.9 366,744 + -0.4 366,745 - -0.5 366,745 - -0.4 366,745 - -0.3 366,866 + -1.4 366,866 + +2.4 366,866 + -0.2 366,866 + -0.4 366,866 + -0.8 366,867 - -1.2 366,867 - -0.2 366,867 - +0.3 366,867 - +1.0 366,867 - -0.0 366,867 - -0.3 366,871 + +0.2 366,872 - +0.3 366,872 - -0.9 366,887 - +1.0 366,899 + -0.2 366,900 - +0.6 366,902 + -1.8 366,902 + -1.8 366,902 + -1.6 366,903 - -0.1 366,968 + +1.6 366,968 + +0.1 366,968 + -0.0 366,968 + -1.3 366,968 + -1.0 366,968 + -0.3 366,968 + -0.2 366,968 + -0.6 366,968 + -0.4 366,968 + +0.9 366,969 - -1.2 366,969 - -0.5 366,969 - -1.0 366,969 - -1.8 366,969 - -0.7 366,969 - -1.3 366,969 - +0.8 366,969 - -1.3 366,969 - +0.0 366,969 - -0.2 366,969 - -0.2 366,969 - -0.2 366,969 - +1.1 366,969 - -2.0 366,969 - +0.1 366,969 - -0.9 367,045 + DZA65_RS01685 0.14 -0.8 367,077 + DZA65_RS01685 0.17 -2.0 367,084 - DZA65_RS01685 0.18 -0.4 367,084 - DZA65_RS01685 0.18 +1.2 367,099 + DZA65_RS01685 0.20 -0.4 367,099 + DZA65_RS01685 0.20 +0.1 367,346 + DZA65_RS01685 0.48 -0.3 367,346 + DZA65_RS01685 0.48 -2.2 367,347 - DZA65_RS01685 0.48 +0.6 367,381 + DZA65_RS01685 0.52 -0.5 367,381 + DZA65_RS01685 0.52 -1.2 367,388 - DZA65_RS01685 0.53 -0.3 367,456 + DZA65_RS01685 0.61 +0.3 367,496 + DZA65_RS01685 0.66 -1.2 367,496 + DZA65_RS01685 0.66 -0.8 367,496 + DZA65_RS01685 0.66 -0.3 367,497 - DZA65_RS01685 0.66 -0.1 367,497 - DZA65_RS01685 0.66 -1.0 367,542 - DZA65_RS01685 0.71 +0.2 367,618 - DZA65_RS01685 0.80 -2.2 367,618 - DZA65_RS01685 0.80 -0.4 367,669 + DZA65_RS01685 0.85 +0.3 367,669 + DZA65_RS01685 0.85 +1.4 367,669 + DZA65_RS01685 0.85 -0.4 367,670 - DZA65_RS01685 0.86 -0.2 367,670 - DZA65_RS01685 0.86 -1.2 367,670 - DZA65_RS01685 0.86 -0.0 367,670 - DZA65_RS01685 0.86 -1.7 367,670 - DZA65_RS01685 0.86 -1.4 367,670 - DZA65_RS01685 0.86 -0.4 367,670 - DZA65_RS01685 0.86 -2.0 367,670 - DZA65_RS01685 0.86 -0.2 367,794 - +0.1 367,794 - -0.9
Or see this region's nucleotide sequence