Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01520

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01510 and DZA65_RS01515 are separated by 49 nucleotidesDZA65_RS01515 and DZA65_RS01520 are separated by 15 nucleotidesDZA65_RS01520 and DZA65_RS01525 overlap by 23 nucleotidesDZA65_RS01525 and DZA65_RS01530 overlap by 4 nucleotides DZA65_RS01510: DZA65_RS01510 - RNA polymerase factor sigma-54, at 331,473 to 332,906 _RS01510 DZA65_RS01515: DZA65_RS01515 - LPS export ABC transporter ATP-binding protein, at 332,956 to 333,681 _RS01515 DZA65_RS01520: DZA65_RS01520 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 333,697 to 334,275 _RS01520 DZA65_RS01525: DZA65_RS01525 - LPS export ABC transporter periplasmic protein LptC, at 334,253 to 334,822 _RS01525 DZA65_RS01530: DZA65_RS01530 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 334,819 to 335,385 _RS01530 Position (kb) 333 334 335Strain fitness (log2 ratio) -2 -1 0 1at 332.850 kb on + strandat 332.865 kb on - strandat 332.907 kb on - strandat 332.916 kb on + strandat 332.916 kb on + strandat 332.917 kb on - strandat 332.917 kb on - strandat 332.942 kb on - strandat 332.942 kb on - strandat 332.942 kb on - strandat 332.942 kb on - strandat 332.955 kb on - strandat 334.366 kb on - strand, within DZA65_RS01525at 334.366 kb on - strand, within DZA65_RS01525at 334.366 kb on - strand, within DZA65_RS01525at 334.366 kb on - strand, within DZA65_RS01525at 334.366 kb on - strand, within DZA65_RS01525at 334.366 kb on - strand, within DZA65_RS01525at 334.407 kb on - strand, within DZA65_RS01525at 334.413 kb on - strand, within DZA65_RS01525at 334.413 kb on - strand, within DZA65_RS01525at 334.413 kb on - strand, within DZA65_RS01525at 334.870 kb on - strandat 334.870 kb on - strandat 334.870 kb on - strandat 334.870 kb on - strandat 334.923 kb on - strand, within DZA65_RS01530at 334.923 kb on - strandat 334.923 kb on - strand, within DZA65_RS01530at 334.923 kb on - strand, within DZA65_RS01530at 334.923 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.022 kb on - strand, within DZA65_RS01530at 335.053 kb on - strand, within DZA65_RS01530at 335.053 kb on - strand, within DZA65_RS01530at 335.099 kb on + strand, within DZA65_RS01530at 335.100 kb on - strand, within DZA65_RS01530at 335.100 kb on - strand, within DZA65_RS01530at 335.100 kb on - strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.101 kb on + strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.102 kb on - strand, within DZA65_RS01530at 335.164 kb on - strand, within DZA65_RS01530at 335.164 kb on - strand, within DZA65_RS01530at 335.188 kb on + strandat 335.203 kb on - strand, within DZA65_RS01530at 335.208 kb on - strand, within DZA65_RS01530at 335.218 kb on + strand, within DZA65_RS01530at 335.218 kb on + strand, within DZA65_RS01530at 335.218 kb on + strand, within DZA65_RS01530at 335.219 kb on - strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strandat 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.258 kb on + strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530at 335.259 kb on - strand, within DZA65_RS01530

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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332,850 + -1.3
332,865 - -1.8
332,907 - +1.6
332,916 + -1.6
332,916 + +0.1
332,917 - -2.2
332,917 - -1.0
332,942 - +0.9
332,942 - +0.2
332,942 - +1.6
332,942 - -1.1
332,955 - -0.1
334,366 - DZA65_RS01525 0.20 -2.2
334,366 - DZA65_RS01525 0.20 -2.4
334,366 - DZA65_RS01525 0.20 -2.6
334,366 - DZA65_RS01525 0.20 -1.8
334,366 - DZA65_RS01525 0.20 -1.4
334,366 - DZA65_RS01525 0.20 -2.2
334,407 - DZA65_RS01525 0.27 -2.4
334,413 - DZA65_RS01525 0.28 -0.9
334,413 - DZA65_RS01525 0.28 -1.4
334,413 - DZA65_RS01525 0.28 -0.9
334,870 - +0.9
334,870 - +0.1
334,870 - -0.8
334,870 - +0.0
334,923 - DZA65_RS01530 0.18 -0.2
334,923 - -2.0
334,923 - DZA65_RS01530 0.18 -0.4
334,923 - DZA65_RS01530 0.18 +0.2
334,923 - DZA65_RS01530 0.18 -1.1
335,022 - DZA65_RS01530 0.36 -0.6
335,022 - DZA65_RS01530 0.36 -0.1
335,022 - DZA65_RS01530 0.36 +1.0
335,022 - DZA65_RS01530 0.36 -0.2
335,022 - DZA65_RS01530 0.36 +0.2
335,022 - DZA65_RS01530 0.36 -1.4
335,022 - DZA65_RS01530 0.36 -0.4
335,022 - DZA65_RS01530 0.36 -0.1
335,022 - DZA65_RS01530 0.36 -0.6
335,022 - DZA65_RS01530 0.36 +0.7
335,022 - DZA65_RS01530 0.36 -0.4
335,022 - DZA65_RS01530 0.36 -0.1
335,022 - DZA65_RS01530 0.36 -1.2
335,022 - DZA65_RS01530 0.36 -1.4
335,022 - DZA65_RS01530 0.36 +0.6
335,053 - DZA65_RS01530 0.41 -0.8
335,053 - DZA65_RS01530 0.41 -0.7
335,099 + DZA65_RS01530 0.49 +0.2
335,100 - DZA65_RS01530 0.50 -2.2
335,100 - DZA65_RS01530 0.50 -0.4
335,100 - DZA65_RS01530 0.50 +0.3
335,101 + DZA65_RS01530 0.50 -1.2
335,101 + DZA65_RS01530 0.50 -0.7
335,101 + DZA65_RS01530 0.50 +1.0
335,101 + DZA65_RS01530 0.50 -1.4
335,101 + DZA65_RS01530 0.50 -1.4
335,101 + DZA65_RS01530 0.50 -0.3
335,101 + DZA65_RS01530 0.50 -1.7
335,101 + DZA65_RS01530 0.50 -0.9
335,101 + DZA65_RS01530 0.50 +0.2
335,101 + DZA65_RS01530 0.50 -1.2
335,101 + DZA65_RS01530 0.50 -2.4
335,101 + DZA65_RS01530 0.50 -0.1
335,101 + DZA65_RS01530 0.50 +0.3
335,101 + DZA65_RS01530 0.50 -0.8
335,101 + DZA65_RS01530 0.50 -1.8
335,101 + DZA65_RS01530 0.50 -0.6
335,101 + DZA65_RS01530 0.50 -0.1
335,101 + DZA65_RS01530 0.50 +1.3
335,101 + DZA65_RS01530 0.50 +0.2
335,101 + DZA65_RS01530 0.50 -1.4
335,101 + DZA65_RS01530 0.50 -0.4
335,101 + DZA65_RS01530 0.50 -0.4
335,101 + DZA65_RS01530 0.50 -0.7
335,102 - DZA65_RS01530 0.50 -0.1
335,102 - DZA65_RS01530 0.50 -0.9
335,102 - DZA65_RS01530 0.50 +0.6
335,102 - DZA65_RS01530 0.50 -0.0
335,102 - DZA65_RS01530 0.50 +0.6
335,102 - DZA65_RS01530 0.50 -0.2
335,102 - DZA65_RS01530 0.50 +0.2
335,102 - DZA65_RS01530 0.50 -0.5
335,102 - DZA65_RS01530 0.50 -0.6
335,102 - DZA65_RS01530 0.50 -0.4
335,102 - DZA65_RS01530 0.50 +0.1
335,102 - DZA65_RS01530 0.50 +1.3
335,102 - DZA65_RS01530 0.50 +0.8
335,102 - DZA65_RS01530 0.50 -0.1
335,102 - DZA65_RS01530 0.50 +0.4
335,102 - DZA65_RS01530 0.50 -0.6
335,102 - DZA65_RS01530 0.50 -0.3
335,102 - DZA65_RS01530 0.50 -0.3
335,102 - DZA65_RS01530 0.50 -0.4
335,102 - DZA65_RS01530 0.50 +1.6
335,102 - DZA65_RS01530 0.50 -0.7
335,102 - DZA65_RS01530 0.50 -1.0
335,102 - DZA65_RS01530 0.50 -1.1
335,102 - DZA65_RS01530 0.50 -0.9
335,102 - DZA65_RS01530 0.50 +0.4
335,102 - DZA65_RS01530 0.50 -0.1
335,102 - DZA65_RS01530 0.50 -0.7
335,102 - DZA65_RS01530 0.50 -0.4
335,102 - DZA65_RS01530 0.50 -1.1
335,102 - DZA65_RS01530 0.50 -0.8
335,102 - DZA65_RS01530 0.50 +0.3
335,164 - DZA65_RS01530 0.61 +1.4
335,164 - DZA65_RS01530 0.61 +0.8
335,188 + +0.2
335,203 - DZA65_RS01530 0.68 -0.4
335,208 - DZA65_RS01530 0.69 -0.2
335,218 + DZA65_RS01530 0.70 -2.0
335,218 + DZA65_RS01530 0.70 -0.8
335,218 + DZA65_RS01530 0.70 -0.9
335,219 - DZA65_RS01530 0.71 +1.6
335,258 + DZA65_RS01530 0.77 +0.1
335,258 + DZA65_RS01530 0.77 +1.6
335,258 + DZA65_RS01530 0.77 +0.3
335,258 + DZA65_RS01530 0.77 -2.2
335,258 + -0.4
335,258 + DZA65_RS01530 0.77 -2.0
335,258 + DZA65_RS01530 0.77 -1.4
335,258 + DZA65_RS01530 0.77 -0.7
335,258 + DZA65_RS01530 0.77 -1.4
335,258 + DZA65_RS01530 0.77 -1.4
335,258 + DZA65_RS01530 0.77 -0.9
335,258 + DZA65_RS01530 0.77 -1.0
335,258 + DZA65_RS01530 0.77 -0.8
335,259 - DZA65_RS01530 0.78 +1.2
335,259 - DZA65_RS01530 0.78 -1.2
335,259 - DZA65_RS01530 0.78 -1.0
335,259 - DZA65_RS01530 0.78 -0.0
335,259 - DZA65_RS01530 0.78 -0.0
335,259 - DZA65_RS01530 0.78 -2.4
335,259 - DZA65_RS01530 0.78 -1.2
335,259 - DZA65_RS01530 0.78 -1.7
335,259 - DZA65_RS01530 0.78 -0.2

Or see this region's nucleotide sequence