Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00980

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00965 and DZA65_RS00970 are separated by 80 nucleotidesDZA65_RS00970 and DZA65_RS00975 are separated by 3 nucleotidesDZA65_RS00975 and DZA65_RS00980 are separated by 3 nucleotidesDZA65_RS00980 and DZA65_RS00985 are separated by 113 nucleotidesDZA65_RS00985 and DZA65_RS00990 are separated by 2 nucleotides DZA65_RS00965: DZA65_RS00965 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 221,054 to 222,691 _RS00965 DZA65_RS00970: DZA65_RS00970 - twin-arginine translocase subunit TatA, at 222,772 to 223,026 _RS00970 DZA65_RS00975: DZA65_RS00975 - Sec-independent protein translocase subunit TatB, at 223,030 to 223,602 _RS00975 DZA65_RS00980: DZA65_RS00980 - Sec-independent protein translocase subunit TatC, at 223,606 to 224,373 _RS00980 DZA65_RS00985: DZA65_RS00985 - 3'-5' ssDNA/RNA exonuclease TatD, at 224,487 to 225,281 _RS00985 DZA65_RS00990: DZA65_RS00990 - porphobilinogen synthase, at 225,284 to 226,306 _RS00990 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2 3at 222.702 kb on + strandat 222.702 kb on + strandat 222.703 kb on - strandat 222.755 kb on - strandat 222.762 kb on + strandat 222.762 kb on + strandat 222.762 kb on + strandat 222.762 kb on + strandat 222.762 kb on + strandat 222.763 kb on - strandat 222.772 kb on - strandat 222.780 kb on + strandat 222.781 kb on - strandat 222.783 kb on + strandat 222.783 kb on + strandat 222.783 kb on + strandat 222.783 kb on + strandat 222.783 kb on + strandat 222.783 kb on + strandat 222.784 kb on - strandat 222.784 kb on - strandat 222.784 kb on - strandat 222.784 kb on - strandat 222.786 kb on + strandat 222.786 kb on + strandat 222.786 kb on + strandat 222.787 kb on - strandat 222.818 kb on + strand, within DZA65_RS00970at 222.818 kb on + strand, within DZA65_RS00970at 222.819 kb on - strand, within DZA65_RS00970at 222.819 kb on - strand, within DZA65_RS00970at 222.819 kb on - strand, within DZA65_RS00970at 222.821 kb on + strand, within DZA65_RS00970at 222.821 kb on + strandat 222.822 kb on - strand, within DZA65_RS00970at 222.822 kb on - strand, within DZA65_RS00970at 222.935 kb on + strand, within DZA65_RS00970at 222.936 kb on - strand, within DZA65_RS00970at 222.936 kb on - strand, within DZA65_RS00970at 223.011 kb on + strandat 223.012 kb on - strandat 223.024 kb on + strandat 223.025 kb on - strandat 223.025 kb on - strandat 223.025 kb on - strandat 223.025 kb on - strandat 223.473 kb on + strand, within DZA65_RS00975at 223.473 kb on + strand, within DZA65_RS00975at 223.474 kb on - strand, within DZA65_RS00975at 223.568 kb on + strandat 223.568 kb on + strandat 223.569 kb on - strandat 223.569 kb on - strandat 223.569 kb on - strandat 223.600 kb on + strandat 223.600 kb on + strandat 223.605 kb on + strandat 223.605 kb on + strandat 223.605 kb on + strandat 223.605 kb on + strandat 223.605 kb on + strandat 223.606 kb on - strandat 223.606 kb on - strandat 223.671 kb on + strandat 223.671 kb on + strandat 223.671 kb on + strandat 223.672 kb on - strandat 223.672 kb on - strandat 223.677 kb on + strandat 223.677 kb on + strandat 223.677 kb on + strandat 223.678 kb on - strandat 223.711 kb on + strand, within DZA65_RS00980at 223.712 kb on - strand, within DZA65_RS00980at 223.729 kb on + strand, within DZA65_RS00980at 223.729 kb on + strandat 223.729 kb on + strand, within DZA65_RS00980at 223.780 kb on - strand, within DZA65_RS00980at 223.870 kb on + strand, within DZA65_RS00980at 223.870 kb on + strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.903 kb on + strand, within DZA65_RS00980at 223.903 kb on + strand, within DZA65_RS00980at 223.903 kb on + strand, within DZA65_RS00980at 223.903 kb on + strand, within DZA65_RS00980at 223.904 kb on - strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.962 kb on + strand, within DZA65_RS00980at 223.981 kb on + strand, within DZA65_RS00980at 224.007 kb on + strand, within DZA65_RS00980at 224.061 kb on + strand, within DZA65_RS00980at 224.061 kb on + strand, within DZA65_RS00980at 224.061 kb on + strand, within DZA65_RS00980at 224.062 kb on - strand, within DZA65_RS00980at 224.062 kb on - strand, within DZA65_RS00980at 224.062 kb on - strandat 224.062 kb on - strand, within DZA65_RS00980at 224.062 kb on - strand, within DZA65_RS00980at 224.062 kb on - strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.189 kb on - strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.273 kb on - strand, within DZA65_RS00980at 224.273 kb on - strandat 224.273 kb on - strand, within DZA65_RS00980at 224.273 kb on - strand, within DZA65_RS00980at 224.276 kb on + strandat 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.277 kb on - strand, within DZA65_RS00980at 224.311 kb on + strandat 224.311 kb on + strandat 224.312 kb on - strandat 224.312 kb on - strandat 224.405 kb on + strandat 224.405 kb on + strandat 224.406 kb on - strandat 224.406 kb on - strandat 224.640 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.894 kb on + strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.921 kb on + strand, within DZA65_RS00985at 224.938 kb on + strand, within DZA65_RS00985at 225.066 kb on - strand, within DZA65_RS00985at 225.105 kb on + strand, within DZA65_RS00985at 225.113 kb on - strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.131 kb on + strand, within DZA65_RS00985at 225.131 kb on + strand, within DZA65_RS00985at 225.132 kb on - strand, within DZA65_RS00985at 225.132 kb on - strand, within DZA65_RS00985at 225.173 kb on + strand, within DZA65_RS00985at 225.174 kb on - strand, within DZA65_RS00985at 225.174 kb on - strand, within DZA65_RS00985

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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222,702 + +1.0
222,702 + +1.0
222,703 - -0.3
222,755 - +0.9
222,762 + -1.9
222,762 + +0.8
222,762 + +0.6
222,762 + +0.6
222,762 + -2.6
222,763 - +0.7
222,772 - -0.6
222,780 + +1.2
222,781 - +0.6
222,783 + -0.1
222,783 + +1.2
222,783 + -2.4
222,783 + -2.2
222,783 + -1.3
222,783 + +0.2
222,784 - +1.5
222,784 - +0.0
222,784 - -1.1
222,784 - +1.4
222,786 + +2.1
222,786 + +0.6
222,786 + +0.9
222,787 - +1.2
222,818 + DZA65_RS00970 0.18 -0.0
222,818 + DZA65_RS00970 0.18 -0.3
222,819 - DZA65_RS00970 0.18 +3.6
222,819 - DZA65_RS00970 0.18 +1.4
222,819 - DZA65_RS00970 0.18 +1.2
222,821 + DZA65_RS00970 0.19 +0.5
222,821 + -0.4
222,822 - DZA65_RS00970 0.20 -1.0
222,822 - DZA65_RS00970 0.20 +0.4
222,935 + DZA65_RS00970 0.64 +0.9
222,936 - DZA65_RS00970 0.64 +0.5
222,936 - DZA65_RS00970 0.64 -0.4
223,011 + -0.3
223,012 - -1.0
223,024 + +0.7
223,025 - -0.1
223,025 - +1.8
223,025 - +0.6
223,025 - +1.1
223,473 + DZA65_RS00975 0.77 -1.2
223,473 + DZA65_RS00975 0.77 -1.6
223,474 - DZA65_RS00975 0.77 +1.7
223,568 + -1.4
223,568 + -0.1
223,569 - +1.1
223,569 - -1.0
223,569 - -0.4
223,600 + -1.3
223,600 + +0.7
223,605 + +0.2
223,605 + -0.6
223,605 + -0.1
223,605 + +0.8
223,605 + +1.6
223,606 - +1.1
223,606 - +1.5
223,671 + +1.6
223,671 + +0.8
223,671 + +0.9
223,672 - +0.3
223,672 - +2.2
223,677 + +0.3
223,677 + -0.1
223,677 + +0.9
223,678 - +0.4
223,711 + DZA65_RS00980 0.14 +2.0
223,712 - DZA65_RS00980 0.14 -0.3
223,729 + DZA65_RS00980 0.16 +0.4
223,729 + -1.0
223,729 + DZA65_RS00980 0.16 +1.4
223,780 - DZA65_RS00980 0.23 -0.1
223,870 + DZA65_RS00980 0.34 +0.1
223,870 + DZA65_RS00980 0.34 +0.7
223,871 - DZA65_RS00980 0.35 +0.9
223,871 - DZA65_RS00980 0.35 +0.8
223,871 - DZA65_RS00980 0.35 -0.8
223,871 - DZA65_RS00980 0.35 +0.9
223,871 - DZA65_RS00980 0.35 -1.0
223,903 + DZA65_RS00980 0.39 -2.0
223,903 + DZA65_RS00980 0.39 +0.5
223,903 + DZA65_RS00980 0.39 +0.9
223,903 + DZA65_RS00980 0.39 +0.5
223,904 - DZA65_RS00980 0.39 -0.1
223,960 + DZA65_RS00980 0.46 +0.0
223,960 + DZA65_RS00980 0.46 -2.1
223,960 + DZA65_RS00980 0.46 +1.4
223,960 + DZA65_RS00980 0.46 -0.7
223,960 + DZA65_RS00980 0.46 -0.4
223,960 + DZA65_RS00980 0.46 +0.6
223,960 + DZA65_RS00980 0.46 +1.7
223,960 + DZA65_RS00980 0.46 +0.0
223,960 + DZA65_RS00980 0.46 -0.4
223,960 + DZA65_RS00980 0.46 +0.8
223,960 + DZA65_RS00980 0.46 +0.5
223,960 + DZA65_RS00980 0.46 -0.5
223,960 + DZA65_RS00980 0.46 -0.8
223,961 - DZA65_RS00980 0.46 +1.5
223,961 - DZA65_RS00980 0.46 +1.5
223,961 - DZA65_RS00980 0.46 +0.3
223,961 - DZA65_RS00980 0.46 +1.8
223,961 - DZA65_RS00980 0.46 -0.2
223,961 - DZA65_RS00980 0.46 -1.4
223,962 + DZA65_RS00980 0.46 -0.3
223,981 + DZA65_RS00980 0.49 +0.6
224,007 + DZA65_RS00980 0.52 +1.1
224,061 + DZA65_RS00980 0.59 +0.3
224,061 + DZA65_RS00980 0.59 +0.8
224,061 + DZA65_RS00980 0.59 +2.3
224,062 - DZA65_RS00980 0.59 -0.1
224,062 - DZA65_RS00980 0.59 -1.6
224,062 - +2.6
224,062 - DZA65_RS00980 0.59 +0.9
224,062 - DZA65_RS00980 0.59 +0.7
224,062 - DZA65_RS00980 0.59 +0.8
224,065 + DZA65_RS00980 0.60 +1.1
224,065 + DZA65_RS00980 0.60 +0.6
224,065 + DZA65_RS00980 0.60 +0.1
224,065 + DZA65_RS00980 0.60 +0.6
224,065 + DZA65_RS00980 0.60 +2.0
224,065 + DZA65_RS00980 0.60 +0.6
224,066 - DZA65_RS00980 0.60 +0.2
224,066 - DZA65_RS00980 0.60 -1.0
224,066 - DZA65_RS00980 0.60 +1.8
224,066 - DZA65_RS00980 0.60 +0.2
224,066 - DZA65_RS00980 0.60 +0.6
224,066 - DZA65_RS00980 0.60 +0.1
224,189 - DZA65_RS00980 0.76 -0.7
224,272 + DZA65_RS00980 0.87 -0.1
224,272 + DZA65_RS00980 0.87 +1.3
224,272 + DZA65_RS00980 0.87 +0.0
224,272 + DZA65_RS00980 0.87 +1.2
224,272 + DZA65_RS00980 0.87 +1.1
224,273 - DZA65_RS00980 0.87 +2.0
224,273 - +1.9
224,273 - DZA65_RS00980 0.87 +0.8
224,273 - DZA65_RS00980 0.87 +0.7
224,276 + +0.6
224,276 + DZA65_RS00980 0.87 +0.6
224,276 + DZA65_RS00980 0.87 +1.7
224,276 + DZA65_RS00980 0.87 +1.6
224,276 + DZA65_RS00980 0.87 -0.1
224,276 + DZA65_RS00980 0.87 +0.2
224,276 + DZA65_RS00980 0.87 +0.5
224,276 + DZA65_RS00980 0.87 -0.9
224,276 + DZA65_RS00980 0.87 +1.5
224,276 + DZA65_RS00980 0.87 +1.2
224,277 - DZA65_RS00980 0.87 -0.2
224,311 + +0.8
224,311 + -1.6
224,312 - -0.4
224,312 - +0.0
224,405 + +0.0
224,405 + +1.6
224,406 - +0.2
224,406 - +1.0
224,640 + DZA65_RS00985 0.19 +0.1
224,746 + DZA65_RS00985 0.33 +0.3
224,746 + DZA65_RS00985 0.33 -0.3
224,746 + DZA65_RS00985 0.33 -0.4
224,894 + DZA65_RS00985 0.51 +2.7
224,895 - DZA65_RS00985 0.51 -0.7
224,895 - DZA65_RS00985 0.51 -0.4
224,895 - DZA65_RS00985 0.51 -0.7
224,895 - DZA65_RS00985 0.51 -0.4
224,921 + DZA65_RS00985 0.55 +0.9
224,938 + DZA65_RS00985 0.57 +0.3
225,066 - DZA65_RS00985 0.73 +0.3
225,105 + DZA65_RS00985 0.78 -1.6
225,113 - DZA65_RS00985 0.79 +2.0
225,124 + DZA65_RS00985 0.80 +2.9
225,124 + DZA65_RS00985 0.80 +0.3
225,124 + DZA65_RS00985 0.80 -0.1
225,124 + DZA65_RS00985 0.80 +0.4
225,124 + DZA65_RS00985 0.80 +0.3
225,124 + DZA65_RS00985 0.80 -1.4
225,124 + DZA65_RS00985 0.80 +0.4
225,124 + DZA65_RS00985 0.80 +0.0
225,124 + DZA65_RS00985 0.80 +0.1
225,124 + DZA65_RS00985 0.80 -0.1
225,124 + DZA65_RS00985 0.80 +0.1
225,124 + DZA65_RS00985 0.80 +0.6
225,124 + DZA65_RS00985 0.80 -0.8
225,125 - DZA65_RS00985 0.80 -0.1
225,125 - DZA65_RS00985 0.80 +1.6
225,125 - DZA65_RS00985 0.80 +1.8
225,125 - DZA65_RS00985 0.80 -0.8
225,125 - DZA65_RS00985 0.80 -0.2
225,125 - DZA65_RS00985 0.80 +0.5
225,125 - DZA65_RS00985 0.80 +0.6
225,125 - DZA65_RS00985 0.80 +1.3
225,125 - DZA65_RS00985 0.80 -1.5
225,125 - DZA65_RS00985 0.80 +0.3
225,125 - DZA65_RS00985 0.80 +2.4
225,131 + DZA65_RS00985 0.81 -0.6
225,131 + DZA65_RS00985 0.81 -0.3
225,132 - DZA65_RS00985 0.81 -0.9
225,132 - DZA65_RS00985 0.81 -0.3
225,173 + DZA65_RS00985 0.86 -0.2
225,174 - DZA65_RS00985 0.86 +1.1
225,174 - DZA65_RS00985 0.86 -0.6

Or see this region's nucleotide sequence