Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00460

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
109,905	+	DZA65_RS00455	0.25	-0.2
109,905	+	DZA65_RS00455	0.25	-1.0
109,905	+	DZA65_RS00455	0.25	-0.8
109,905	+	DZA65_RS00455	0.25	-0.7
109,905	+	DZA65_RS00455	0.25	-3.3
109,905	+	DZA65_RS00455	0.25	-1.0
109,905	+	DZA65_RS00455	0.25	-1.4
109,905	+	DZA65_RS00455	0.25	-1.0
109,906	-	DZA65_RS00455	0.25	-1.2
109,906	-	DZA65_RS00455	0.25	+0.4
109,906	-	DZA65_RS00455	0.25	-1.3
109,906	-	DZA65_RS00455	0.25	-0.3
109,906	-	DZA65_RS00455	0.25	-0.5
109,906	-	DZA65_RS00455	0.25	+0.1
109,906	-	DZA65_RS00455	0.25	+0.6
110,017	+			-1.4
110,018	-	DZA65_RS00455	0.35	-0.1
110,095	-			+1.2
110,194	+	DZA65_RS00455	0.50	+0.4
110,194	+	DZA65_RS00455	0.50	-0.1
110,194	+	DZA65_RS00455	0.50	-2.0
110,194	+	DZA65_RS00455	0.50	+0.0
110,194	+	DZA65_RS00455	0.50	+1.0
110,194	+	DZA65_RS00455	0.50	-0.5
110,195	-	DZA65_RS00455	0.51	-1.1
110,195	-	DZA65_RS00455	0.51	-1.3
110,195	-	DZA65_RS00455	0.51	+0.6
110,195	-	DZA65_RS00455	0.51	-1.2
110,320	-	DZA65_RS00455	0.61	-0.3
110,419	+	DZA65_RS00455	0.70	-1.2
110,535	+	DZA65_RS00455	0.80	-0.7
110,535	+	DZA65_RS00455	0.80	-1.4
110,536	-	DZA65_RS00455	0.80	-0.5
110,536	-	DZA65_RS00455	0.80	-0.4
110,560	+	DZA65_RS00455	0.82	+1.6
110,560	+	DZA65_RS00455	0.82	-0.4
110,560	+	DZA65_RS00455	0.82	-0.3
110,560	+	DZA65_RS00455	0.82	-0.6
110,561	-	DZA65_RS00455	0.82	-1.2
110,561	-	DZA65_RS00455	0.82	-1.6
110,562	+	DZA65_RS00455	0.82	-0.8
110,563	-	DZA65_RS00455	0.82	-2.2
110,563	-	DZA65_RS00455	0.82	-1.0
110,563	-	DZA65_RS00455	0.82	-1.0
110,563	-	DZA65_RS00455	0.82	+0.1
110,578	-	DZA65_RS00455	0.84	-0.3
110,622	+	DZA65_RS00455	0.88	-1.2
110,622	+	DZA65_RS00455	0.88	-1.7
110,622	+	DZA65_RS00455	0.88	-1.0
110,622	+	DZA65_RS00455	0.88	-0.1
110,623	-	DZA65_RS00455	0.88	-0.4
110,623	-	DZA65_RS00455	0.88	-0.6
110,623	-	DZA65_RS00455	0.88	-1.0
110,623	-	DZA65_RS00455	0.88	-0.1
110,623	-	DZA65_RS00455	0.88	-0.3
110,623	-	DZA65_RS00455	0.88	-0.4
110,632	+	DZA65_RS00455	0.88	-0.5
110,632	+	DZA65_RS00455	0.88	+1.0
110,632	+	DZA65_RS00455	0.88	-2.8
110,632	+	DZA65_RS00455	0.88	+1.3
110,633	-	DZA65_RS00455	0.89	-0.5
110,633	-	DZA65_RS00455	0.89	-1.8
110,633	-	DZA65_RS00455	0.89	+0.4
110,633	-	DZA65_RS00455	0.89	-0.7
110,633	-	DZA65_RS00455	0.89	-0.6
110,633	-	DZA65_RS00455	0.89	-2.0
110,633	-	DZA65_RS00455	0.89	-1.1
110,634	+	DZA65_RS00455	0.89	-1.4
110,634	+	DZA65_RS00455	0.89	-2.0
110,635	-	DZA65_RS00455	0.89	+0.9
110,635	-	DZA65_RS00455	0.89	+0.8
110,635	-	DZA65_RS00455	0.89	-0.5
110,635	-	DZA65_RS00455	0.89	-0.6
110,635	-	DZA65_RS00455	0.89	-2.2
110,635	-	DZA65_RS00455	0.89	-0.2
110,635	-	DZA65_RS00455	0.89	+0.2
110,635	-	DZA65_RS00455	0.89	-0.4
110,635	-	DZA65_RS00455	0.89	-1.8
110,684	+			-0.8
110,684	+			-0.0
110,685	-			-0.7
110,735	+			+0.0
110,736	-			-1.5
110,736	-			-0.4
110,738	+			+0.0
110,738	+			-1.9
110,738	+			-1.1
110,739	-			-0.2
110,739	-			-0.8
110,739	-			+1.0
110,739	-			-0.7
110,739	-			-0.6
110,739	-			-0.1
110,739	-			-1.2
110,739	-			+0.3
110,739	-			-1.2
110,739	-			+0.3
110,743	+			-1.3
110,743	+			-0.2
110,744	-			-0.6
110,744	-			-0.4
110,744	-			+0.4
110,744	-			+0.4
110,744	-			+0.3
110,744	-			-1.5
110,752	+			+0.4
110,752	+			-0.4
110,752	+			-0.5
110,752	+			+0.2
110,753	-			-0.7
110,753	-			+0.6
110,753	-			-0.4
110,777	+			+0.1
110,795	+			-0.7
110,809	+			-0.4
110,809	+			-0.0
110,809	+			-0.6
110,809	+			-0.1
110,810	-			-0.1
110,813	+			-2.1
110,813	+			-0.4
110,813	+			+0.1
110,813	+			-2.0
110,813	+			+1.1
110,813	+			-2.4
110,813	+			+1.6
110,813	+			-2.2
110,813	+			-1.0
110,813	+			-2.4
110,813	+			+0.6
110,813	+			-2.1
110,814	-			-0.6
110,814	-			+0.1
110,814	-			+0.8
110,814	-			+2.2
110,814	-			+1.4
110,814	-			+1.6
110,817	+			+0.1
110,817	+			+0.8
110,817	+			-0.7
110,817	+			-1.0
110,817	+			+0.2
110,817	+			-1.0
110,818	-			+0.2
110,831	+			-0.8
110,831	+			+0.5
110,831	+			-2.0
110,842	+			-0.4
110,842	+			-0.4
110,842	+			+1.4
110,890	+			+0.1
110,890	+			-0.2
110,890	+			+0.0
110,890	+			+0.2
110,890	+			-0.0
110,890	+			+1.7
110,975	+	DZA65_RS00460	0.12	+0.7
111,004	+	DZA65_RS00460	0.15	-1.2
111,004	+	DZA65_RS00460	0.15	+2.0
111,004	+	DZA65_RS00460	0.15	+1.5
111,089	+	DZA65_RS00460	0.24	+0.5
111,110	+	DZA65_RS00460	0.27	+0.3
111,110	+	DZA65_RS00460	0.27	-0.7
111,110	+	DZA65_RS00460	0.27	-0.4
111,110	+	DZA65_RS00460	0.27	+0.3
111,110	+	DZA65_RS00460	0.27	+0.5
111,123	+	DZA65_RS00460	0.28	+1.0
111,123	+	DZA65_RS00460	0.28	+0.4
111,175	+	DZA65_RS00460	0.34	-0.6
111,175	+	DZA65_RS00460	0.34	-1.1
111,175	+	DZA65_RS00460	0.34	+0.5
111,175	+	DZA65_RS00460	0.34	+0.8
111,175	+	DZA65_RS00460	0.34	+1.0
111,175	+	DZA65_RS00460	0.34	+1.2
111,175	+	DZA65_RS00460	0.34	+0.5
111,175	+	DZA65_RS00460	0.34	+0.6
111,175	+	DZA65_RS00460	0.34	-3.0
111,175	+	DZA65_RS00460	0.34	+0.6
111,175	+	DZA65_RS00460	0.34	+0.3
111,175	+	DZA65_RS00460	0.34	+1.0
111,175	+	DZA65_RS00460	0.34	-0.4
111,176	-	DZA65_RS00460	0.34	+2.2
111,176	-	DZA65_RS00460	0.34	-2.0
111,176	-	DZA65_RS00460	0.34	+0.9
111,176	-	DZA65_RS00460	0.34	-2.0
111,176	-	DZA65_RS00460	0.34	+1.6
111,176	-	DZA65_RS00460	0.34	-0.2
111,176	-	DZA65_RS00460	0.34	+1.2
111,176	-	DZA65_RS00460	0.34	+2.6
111,176	-	DZA65_RS00460	0.34	+0.6
111,176	-	DZA65_RS00460	0.34	+0.0
111,375	+	DZA65_RS00460	0.55	+1.3
111,375	+	DZA65_RS00460	0.55	-0.8
111,375	+	DZA65_RS00460	0.55	+0.6
111,375	+	DZA65_RS00460	0.55	+0.5
111,375	+	DZA65_RS00460	0.55	-0.3
111,376	-	DZA65_RS00460	0.55	+0.3
111,452	+	DZA65_RS00460	0.64	+0.1
111,452	+	DZA65_RS00460	0.64	-0.0
111,452	+	DZA65_RS00460	0.64	+0.9
111,452	+	DZA65_RS00460	0.64	+1.4
111,540	+	DZA65_RS00460	0.73	+0.7
111,540	+	DZA65_RS00460	0.73	+0.9
111,541	-	DZA65_RS00460	0.73	+0.0
111,541	-	DZA65_RS00460	0.73	+2.2
111,545	+	DZA65_RS00460	0.74	+1.3
111,545	+	DZA65_RS00460	0.74	-1.1
111,546	-	DZA65_RS00460	0.74	+1.6
111,663	+	DZA65_RS00460	0.86	-0.8
111,664	-	DZA65_RS00460	0.86	+0.1
111,690	+	DZA65_RS00460	0.89	+0.8
111,690	+	DZA65_RS00460	0.89	+0.1
111,690	+	DZA65_RS00460	0.89	+0.4
111,690	+	DZA65_RS00460	0.89	-0.1
111,690	+	DZA65_RS00460	0.89	-0.1
111,690	+	DZA65_RS00460	0.89	+1.2
111,690	+	DZA65_RS00460	0.89	+1.6
111,690	+	DZA65_RS00460	0.89	-0.6
111,690	+	DZA65_RS00460	0.89	+0.8
111,690	+	DZA65_RS00460	0.89	+0.4
111,690	+	DZA65_RS00460	0.89	+0.5
111,690	+	DZA65_RS00460	0.89	-2.2
111,690	+	DZA65_RS00460	0.89	-2.7
111,690	+	DZA65_RS00460	0.89	-0.6
111,690	+	DZA65_RS00460	0.89	+1.4
111,690	+			-1.4
111,690	+	DZA65_RS00460	0.89	-2.3
111,691	-	DZA65_RS00460	0.89	+0.3
111,691	-	DZA65_RS00460	0.89	-0.1
111,691	-	DZA65_RS00460	0.89	+0.9
111,691	-	DZA65_RS00460	0.89	+1.8
111,691	-	DZA65_RS00460	0.89	+0.5
111,691	-	DZA65_RS00460	0.89	+1.4
111,691	-	DZA65_RS00460	0.89	-0.1
111,691	-	DZA65_RS00460	0.89	+1.0
111,691	-	DZA65_RS00460	0.89	-2.2
111,691	-	DZA65_RS00460	0.89	+2.3
111,691	-	DZA65_RS00460	0.89	+1.4
111,691	-	DZA65_RS00460	0.89	+0.0
111,691	-	DZA65_RS00460	0.89	+0.4
111,691	-	DZA65_RS00460	0.89	+0.1
111,691	-	DZA65_RS00460	0.89	+1.1
111,691	-	DZA65_RS00460	0.89	-1.0
111,691	-	DZA65_RS00460	0.89	+0.7
111,691	-	DZA65_RS00460	0.89	+0.2
111,691	-	DZA65_RS00460	0.89	+0.1
111,692	+	DZA65_RS00460	0.90	+0.9
111,692	+	DZA65_RS00460	0.90	+0.8
111,692	+	DZA65_RS00460	0.90	-1.0
111,692	+	DZA65_RS00460	0.90	+1.6
111,692	+	DZA65_RS00460	0.90	+0.8
111,693	-	DZA65_RS00460	0.90	-0.3
111,693	-	DZA65_RS00460	0.90	+0.7
111,693	-	DZA65_RS00460	0.90	+2.3
111,741	+			+0.6
111,742	-			+0.6
111,742	-			+0.4
111,742	-			+0.2
111,742	-			+1.3
111,742	-			-0.4
111,742	-			+0.6
111,742	-			+1.5
111,742	-			+0.6
111,765	+			+0.4
111,765	+			-0.4
111,765	+			+1.3
111,766	-			-1.0
111,766	-			-0.6
111,766	-			+0.0
111,783	+			-0.4
111,783	+			+1.6
111,783	+			+0.4
111,783	+			-0.1
111,783	+			+2.7
111,783	+			-0.8
111,783	+			-0.2
111,784	-			+0.8
111,784	-			+0.6
111,784	-			+1.6
111,784	-			+0.7
111,865	+			-0.3
111,865	+			+0.1
111,865	+			-0.0
111,865	+			-0.2
111,865	+			+0.2
111,865	+			-0.4
111,865	+			-0.0
111,865	+			+0.2
111,866	-			-0.4
111,866	-			-0.5
111,866	-			+1.5
111,866	-			-0.5
111,866	-			+0.1
111,866	-			+0.6
111,866	-			-0.2
111,866	-			+0.0
111,892	+			-0.3
111,893	-			-0.1
111,949	+	DZA65_RS00465	0.17	-0.3
111,949	+	DZA65_RS00465	0.17	-2.0
111,950	-	DZA65_RS00465	0.17	-1.1
112,005	+	DZA65_RS00465	0.27	+0.0
112,036	+	DZA65_RS00465	0.34	+0.1
112,036	+	DZA65_RS00465	0.34	+0.9
112,057	+	DZA65_RS00465	0.38	-0.4
112,058	-	DZA65_RS00465	0.38	-0.9
112,058	-	DZA65_RS00465	0.38	+1.3
112,058	-	DZA65_RS00465	0.38	+0.4
112,058	-	DZA65_RS00465	0.38	-0.8
112,058	-	DZA65_RS00465	0.38	+0.6
112,075	-	DZA65_RS00465	0.41	-0.1
112,075	-	DZA65_RS00465	0.41	+0.0
112,105	+	DZA65_RS00465	0.47	+1.0
112,105	+	DZA65_RS00465	0.47	-1.0
112,105	+	DZA65_RS00465	0.47	+0.6
112,106	-	DZA65_RS00465	0.47	-0.3
112,106	-	DZA65_RS00465	0.47	+0.3
112,108	+	DZA65_RS00465	0.48	+0.5
112,108	+	DZA65_RS00465	0.48	+1.2
112,108	+	DZA65_RS00465	0.48	+1.2
112,108	+	DZA65_RS00465	0.48	+2.4
112,108	+	DZA65_RS00465	0.48	+1.5
112,108	+	DZA65_RS00465	0.48	+0.0
112,108	+	DZA65_RS00465	0.48	-0.0
112,108	+	DZA65_RS00465	0.48	+1.8
112,108	+	DZA65_RS00465	0.48	+1.3
112,108	+	DZA65_RS00465	0.48	-0.0
112,109	-	DZA65_RS00465	0.48	+1.2
112,109	-	DZA65_RS00465	0.48	+0.4
112,109	-	DZA65_RS00465	0.48	-2.6
112,109	-	DZA65_RS00465	0.48	-1.2
112,109	-	DZA65_RS00465	0.48	+0.6
112,109	-	DZA65_RS00465	0.48	+0.6
112,109	-	DZA65_RS00465	0.48	-1.0
112,114	+	DZA65_RS00465	0.49	+0.1
112,114	+	DZA65_RS00465	0.49	+1.2
112,114	+	DZA65_RS00465	0.49	+0.4
112,114	+	DZA65_RS00465	0.49	+1.3
112,114	+	DZA65_RS00465	0.49	+0.9
112,114	+	DZA65_RS00465	0.49	+0.9
112,114	+	DZA65_RS00465	0.49	+0.1
112,114	+	DZA65_RS00465	0.49	+1.6
112,114	+	DZA65_RS00465	0.49	+0.1
112,114	+	DZA65_RS00465	0.49	+1.5
112,114	+	DZA65_RS00465	0.49	+1.3
112,114	+	DZA65_RS00465	0.49	-2.0
112,114	+	DZA65_RS00465	0.49	+0.9
112,114	+	DZA65_RS00465	0.49	+1.3
112,114	+	DZA65_RS00465	0.49	+0.2
112,114	+	DZA65_RS00465	0.49	-0.1
112,114	+	DZA65_RS00465	0.49	+0.7
112,115	-	DZA65_RS00465	0.49	+0.2
112,115	-	DZA65_RS00465	0.49	-0.7
112,115	-	DZA65_RS00465	0.49	-0.6
112,115	-	DZA65_RS00465	0.49	+0.1
112,115	-	DZA65_RS00465	0.49	+0.5
112,115	-	DZA65_RS00465	0.49	-2.6
112,115	-	DZA65_RS00465	0.49	-0.4
112,115	-	DZA65_RS00465	0.49	-1.0
112,115	-	DZA65_RS00465	0.49	+0.6
112,115	-	DZA65_RS00465	0.49	-3.6
112,115	-	DZA65_RS00465	0.49	+1.1
112,115	-	DZA65_RS00465	0.49	-0.4
112,115	-	DZA65_RS00465	0.49	-1.4
112,115	-			+0.6
112,115	-	DZA65_RS00465	0.49	-2.2
112,115	-	DZA65_RS00465	0.49	-1.7
112,115	-	DZA65_RS00465	0.49	-0.7
112,115	-	DZA65_RS00465	0.49	+1.0
112,116	+	DZA65_RS00465	0.49	+1.0
112,116	+	DZA65_RS00465	0.49	+1.8
112,116	+	DZA65_RS00465	0.49	+0.3
112,116	+	DZA65_RS00465	0.49	+0.6
112,116	+	DZA65_RS00465	0.49	-2.2
112,116	+	DZA65_RS00465	0.49	+0.2
112,116	+	DZA65_RS00465	0.49	+1.1
112,117	-	DZA65_RS00465	0.49	-1.7
112,117	-	DZA65_RS00465	0.49	-0.6
112,117	-	DZA65_RS00465	0.49	+0.5
112,117	-	DZA65_RS00465	0.49	-1.0
112,117	-	DZA65_RS00465	0.49	+2.1
112,117	-	DZA65_RS00465	0.49	+0.6
112,379	+			+0.5
112,379	+			+0.4
112,379	+			+0.7
112,379	+			+1.0
112,379	+			-0.1
112,379	+			-0.6
112,379	+			+1.3
112,379	+			-0.4
112,379	+			-0.4
112,379	+			+0.8
112,380	-			+1.0
112,380	-			-0.2
112,380	-			-1.6
112,380	-			+0.0
112,380	-			+0.1
112,380	-			+0.5
112,380	-			-0.1
112,380	-			-1.0
112,433	+			+1.0
112,433	+			+0.2
112,434	-			+0.6
112,434	-			+1.4

Or see this region's nucleotide sequence