Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00450

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
107,914	+	DZA65_RS00445	0.14	+0.9
107,914	+	DZA65_RS00445	0.14	+0.1
107,914	+	DZA65_RS00445	0.14	-0.2
107,915	-	DZA65_RS00445	0.15	+0.0
107,915	-	DZA65_RS00445	0.15	-1.2
107,983	+	DZA65_RS00445	0.22	+0.6
107,984	-	DZA65_RS00445	0.22	-0.3
107,984	-	DZA65_RS00445	0.22	-1.7
107,997	+	DZA65_RS00445	0.23	-0.2
108,018	+	DZA65_RS00445	0.26	-1.0
108,019	-	DZA65_RS00445	0.26	-0.1
108,053	+	DZA65_RS00445	0.29	+0.1
108,054	-	DZA65_RS00445	0.29	-1.2
108,054	-	DZA65_RS00445	0.29	-2.1
108,060	+	DZA65_RS00445	0.30	+0.7
108,061	-	DZA65_RS00445	0.30	-0.2
108,061	-	DZA65_RS00445	0.30	-2.6
108,061	-	DZA65_RS00445	0.30	-0.1
108,094	+	DZA65_RS00445	0.34	-1.7
108,094	+	DZA65_RS00445	0.34	+0.2
108,094	+	DZA65_RS00445	0.34	-0.7
108,095	-	DZA65_RS00445	0.34	-0.8
108,095	-	DZA65_RS00445	0.34	+0.1
108,095	-	DZA65_RS00445	0.34	+0.1
108,159	-	DZA65_RS00445	0.41	+0.3
108,160	+	DZA65_RS00445	0.41	+0.3
108,160	+	DZA65_RS00445	0.41	-0.4
108,160	+	DZA65_RS00445	0.41	-0.4
108,160	+	DZA65_RS00445	0.41	-1.5
108,160	+	DZA65_RS00445	0.41	+1.1
108,160	+	DZA65_RS00445	0.41	+1.9
108,160	+	DZA65_RS00445	0.41	-0.8
108,160	+	DZA65_RS00445	0.41	-0.8
108,161	-	DZA65_RS00445	0.41	-1.0
108,161	-	DZA65_RS00445	0.41	+0.3
108,161	-	DZA65_RS00445	0.41	-1.3
108,171	+	DZA65_RS00445	0.42	-1.4
108,171	+	DZA65_RS00445	0.42	-0.3
108,171	+	DZA65_RS00445	0.42	-2.0
108,171	+	DZA65_RS00445	0.42	-0.4
108,171	+	DZA65_RS00445	0.42	-0.5
108,171	+	DZA65_RS00445	0.42	-1.4
108,171	+	DZA65_RS00445	0.42	+1.2
108,172	-	DZA65_RS00445	0.42	-0.8
108,172	-	DZA65_RS00445	0.42	+0.4
108,172	-	DZA65_RS00445	0.42	+0.6
108,172	-	DZA65_RS00445	0.42	-0.2
108,172	-	DZA65_RS00445	0.42	+0.4
108,172	-	DZA65_RS00445	0.42	-1.0
108,172	-	DZA65_RS00445	0.42	+0.8
108,172	-	DZA65_RS00445	0.42	-0.1
108,201	+	DZA65_RS00445	0.45	-0.4
108,233	+	DZA65_RS00445	0.48	+0.2
108,233	+	DZA65_RS00445	0.48	-1.2
108,234	-	DZA65_RS00445	0.49	+1.0
108,234	-	DZA65_RS00445	0.49	-0.7
108,234	-	DZA65_RS00445	0.49	-0.0
108,247	+	DZA65_RS00445	0.50	-1.4
108,248	-	DZA65_RS00445	0.50	+1.0
108,248	-	DZA65_RS00445	0.50	-0.1
108,278	+	DZA65_RS00445	0.53	-1.0
108,278	+			+2.4
108,354	+	DZA65_RS00445	0.61	-0.2
108,355	-	DZA65_RS00445	0.61	+0.0
108,355	-	DZA65_RS00445	0.61	-0.8
108,385	+	DZA65_RS00445	0.65	+0.5
108,385	+	DZA65_RS00445	0.65	+0.6
108,385	+	DZA65_RS00445	0.65	-0.7
108,386	-	DZA65_RS00445	0.65	-1.2
108,408	-	DZA65_RS00445	0.67	-0.2
108,481	+	DZA65_RS00445	0.75	+0.4
108,481	+	DZA65_RS00445	0.75	-1.4
108,481	+	DZA65_RS00445	0.75	+0.2
108,481	+	DZA65_RS00445	0.75	+0.6
108,481	+	DZA65_RS00445	0.75	+0.4
108,481	+	DZA65_RS00445	0.75	+2.2
108,482	-	DZA65_RS00445	0.75	-1.0
108,482	-			-1.0
108,482	-	DZA65_RS00445	0.75	-1.4
108,482	-	DZA65_RS00445	0.75	-0.2
108,482	-	DZA65_RS00445	0.75	+0.6
108,485	+	DZA65_RS00445	0.75	+0.1
108,485	+	DZA65_RS00445	0.75	+1.0
108,485	+	DZA65_RS00445	0.75	-0.2
108,485	+	DZA65_RS00445	0.75	-1.2
108,485	+	DZA65_RS00445	0.75	+0.8
108,486	-	DZA65_RS00445	0.75	-2.8
108,486	-	DZA65_RS00445	0.75	+0.3
108,486	-	DZA65_RS00445	0.75	-1.7
108,486	-	DZA65_RS00445	0.75	-1.2
108,486	-	DZA65_RS00445	0.75	-0.2
108,486	-	DZA65_RS00445	0.75	-0.5
108,486	-	DZA65_RS00445	0.75	+0.6
108,486	-	DZA65_RS00445	0.75	+1.2
108,486	-	DZA65_RS00445	0.75	-0.2
108,528	+	DZA65_RS00445	0.80	+0.1
108,528	+	DZA65_RS00445	0.80	+0.5
108,528	+	DZA65_RS00445	0.80	-1.1
108,528	+	DZA65_RS00445	0.80	-1.0
108,529	-	DZA65_RS00445	0.80	+0.6
108,529	-	DZA65_RS00445	0.80	-0.3
108,529	-	DZA65_RS00445	0.80	+0.3
108,656	+			-0.2
108,657	-			-0.0
108,657	-			+0.2
108,720	+			+0.4
108,720	+			-0.5
108,721	-			+0.4
108,721	-			+0.0
108,721	-			-0.4
108,756	-			+0.0
108,756	-			+1.8
108,774	-			-1.0
108,774	-			+1.3
108,774	-			+0.6
108,816	-			-0.6
108,833	+			+1.8
108,833	+			+0.5
108,965	-	DZA65_RS00450	0.24	+1.0
108,997	+	DZA65_RS00450	0.28	-0.1
108,997	+	DZA65_RS00450	0.28	-1.8
108,997	+	DZA65_RS00450	0.28	-1.4
108,997	+	DZA65_RS00450	0.28	+1.1
108,997	+	DZA65_RS00450	0.28	-0.3
108,998	-	DZA65_RS00450	0.28	+0.3
108,998	-	DZA65_RS00450	0.28	-0.8
108,998	-	DZA65_RS00450	0.28	-2.1
108,998	-	DZA65_RS00450	0.28	-0.2
108,998	-	DZA65_RS00450	0.28	-0.7
108,998	-	DZA65_RS00450	0.28	+0.1
108,998	-	DZA65_RS00450	0.28	-0.4
108,998	-	DZA65_RS00450	0.28	-0.4
109,146	-	DZA65_RS00450	0.47	+0.0
109,304	+	DZA65_RS00450	0.67	+0.3
109,304	+	DZA65_RS00450	0.67	-0.4
109,304	+	DZA65_RS00450	0.67	-0.4
109,304	+	DZA65_RS00450	0.67	-0.2
109,304	+	DZA65_RS00450	0.67	-1.7
109,304	+	DZA65_RS00450	0.67	+1.6
109,304	+	DZA65_RS00450	0.67	-0.1
109,304	+	DZA65_RS00450	0.67	-1.1
109,304	+	DZA65_RS00450	0.67	-0.4
109,304	+	DZA65_RS00450	0.67	-1.0
109,304	+	DZA65_RS00450	0.67	-0.4
109,304	+	DZA65_RS00450	0.67	-1.4
109,305	-	DZA65_RS00450	0.67	-0.6
109,305	-	DZA65_RS00450	0.67	-0.8
109,305	-	DZA65_RS00450	0.67	-0.2
109,305	-	DZA65_RS00450	0.67	-1.4
109,305	-	DZA65_RS00450	0.67	-2.2
109,305	-	DZA65_RS00450	0.67	-0.4
109,305	-	DZA65_RS00450	0.67	-1.8
109,305	-	DZA65_RS00450	0.67	+1.1
109,305	-	DZA65_RS00450	0.67	-0.4
109,305	-	DZA65_RS00450	0.67	-1.0
109,305	-	DZA65_RS00450	0.67	-0.8
109,305	-	DZA65_RS00450	0.67	-0.6
109,305	-	DZA65_RS00450	0.67	-1.4
109,305	-	DZA65_RS00450	0.67	+0.4
109,520	+			+1.4
109,520	+			-0.4
109,520	+			-0.2
109,520	+			-1.0
109,521	-			-1.4
109,521	-			+0.6
109,521	-			+0.0
109,532	+			+0.3
109,533	-			+0.4
109,533	-			-0.4
109,533	-			+0.3
109,533	-			+0.0
109,535	+			+0.6
109,535	+			-0.7
109,535	+			-0.8
109,535	+			+0.3
109,536	-			+0.6
109,536	-			-0.7
109,536	-			-1.0
109,536	-			-0.0
109,600	+			+0.3
109,600	+			-0.7
109,601	-			-1.0
109,619	+			-0.6
109,619	+			+0.2
109,619	+			-0.7
109,619	+			+0.0
109,619	+			-0.3
109,619	+			-1.7
109,619	+			-1.2
109,619	+			-0.0
109,619	+			+0.3
109,619	+			-1.1
109,619	+			-1.4
109,619	+			+1.3
109,619	+			+0.6
109,619	+			-1.0
109,620	-			-0.0
109,620	-			-1.7
109,620	-			-2.2
109,620	-			-1.6
109,620	-			-1.1
109,620	-			+1.1
109,620	-			-1.3
109,620	-			+0.0
109,620	-			+0.2
109,620	-			+0.2
109,650	+			-0.1
109,650	+			-0.4
109,650	+			+0.7
109,651	-			+0.6
109,651	-			-2.0
109,651	-			-1.5
109,698	+			+0.9
109,698	+			-0.5
109,698	+			-0.3
109,698	+			-0.3
109,698	+			+1.3
109,698	+			+0.9
109,698	+			-0.6
109,698	+			+0.7
109,699	-			+0.0
109,699	-			-1.4
109,699	-			-1.4
109,810	+	DZA65_RS00455	0.17	-1.0
109,810	+	DZA65_RS00455	0.17	-0.4
109,810	+	DZA65_RS00455	0.17	-0.7
109,810	+	DZA65_RS00455	0.17	-0.0
109,811	-	DZA65_RS00455	0.17	+0.4
109,842	+	DZA65_RS00455	0.20	-2.7
109,842	+	DZA65_RS00455	0.20	+0.7
109,842	+	DZA65_RS00455	0.20	-0.7
109,842	+	DZA65_RS00455	0.20	-0.4
109,842	+	DZA65_RS00455	0.20	-0.6
109,863	+	DZA65_RS00455	0.22	-0.6
109,905	+	DZA65_RS00455	0.25	-0.2
109,905	+	DZA65_RS00455	0.25	-1.0
109,905	+	DZA65_RS00455	0.25	-0.8
109,905	+	DZA65_RS00455	0.25	-0.7
109,905	+	DZA65_RS00455	0.25	-3.3
109,905	+	DZA65_RS00455	0.25	-1.0
109,905	+	DZA65_RS00455	0.25	-1.4
109,905	+	DZA65_RS00455	0.25	-1.0
109,906	-	DZA65_RS00455	0.25	-1.2
109,906	-	DZA65_RS00455	0.25	+0.4
109,906	-	DZA65_RS00455	0.25	-1.3
109,906	-	DZA65_RS00455	0.25	-0.3
109,906	-	DZA65_RS00455	0.25	-0.5
109,906	-	DZA65_RS00455	0.25	+0.1
109,906	-	DZA65_RS00455	0.25	+0.6
110,017	+			-1.4
110,018	-	DZA65_RS00455	0.35	-0.1
110,095	-			+1.2
110,194	+	DZA65_RS00455	0.50	+0.4
110,194	+	DZA65_RS00455	0.50	-0.1
110,194	+	DZA65_RS00455	0.50	-2.0
110,194	+	DZA65_RS00455	0.50	+0.0
110,194	+	DZA65_RS00455	0.50	+1.0
110,194	+	DZA65_RS00455	0.50	-0.5
110,195	-	DZA65_RS00455	0.51	-1.1
110,195	-	DZA65_RS00455	0.51	-1.3
110,195	-	DZA65_RS00455	0.51	+0.6
110,195	-	DZA65_RS00455	0.51	-1.2
110,320	-	DZA65_RS00455	0.61	-0.3
110,419	+	DZA65_RS00455	0.70	-1.2
110,535	+	DZA65_RS00455	0.80	-0.7
110,535	+	DZA65_RS00455	0.80	-1.4
110,536	-	DZA65_RS00455	0.80	-0.5
110,536	-	DZA65_RS00455	0.80	-0.4
110,560	+	DZA65_RS00455	0.82	+1.6
110,560	+	DZA65_RS00455	0.82	-0.4
110,560	+	DZA65_RS00455	0.82	-0.3
110,560	+	DZA65_RS00455	0.82	-0.6
110,561	-	DZA65_RS00455	0.82	-1.2
110,561	-	DZA65_RS00455	0.82	-1.6
110,562	+	DZA65_RS00455	0.82	-0.8
110,563	-	DZA65_RS00455	0.82	-2.2
110,563	-	DZA65_RS00455	0.82	-1.0
110,563	-	DZA65_RS00455	0.82	-1.0
110,563	-	DZA65_RS00455	0.82	+0.1

Or see this region's nucleotide sequence