Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22820

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,199,514	+		DDA3937_RS14010	0.51	+0.6
3,199,515	-		DDA3937_RS14010	0.51	+1.1
3,199,515	-		DDA3937_RS14010	0.51	-0.0
3,199,515	-		DDA3937_RS14010	0.51	+0.5
3,199,515	-		DDA3937_RS14010	0.51	-1.1
3,199,534	+		DDA3937_RS14010	0.55	-0.2
3,199,535	-		DDA3937_RS14010	0.55	-1.9
3,199,554	+		DDA3937_RS14010	0.59	-0.5
3,199,554	+		DDA3937_RS14010	0.59	-0.3
3,199,555	-		DDA3937_RS14010	0.59	-1.0
3,199,595	+		DDA3937_RS14010	0.67	-1.1
3,199,595	+		DDA3937_RS14010	0.67	+0.7
3,199,595	+		DDA3937_RS14010	0.67	+0.2
3,199,595	+		DDA3937_RS14010	0.67	-0.5
3,199,595	+		DDA3937_RS14010	0.67	+0.7
3,199,596	-		DDA3937_RS14010	0.67	-0.5
3,199,596	-		DDA3937_RS14010	0.67	-1.5
3,199,596	-		DDA3937_RS14010	0.67	+0.6
3,199,597	+		DDA3937_RS14010	0.67	+0.5
3,199,598	-		DDA3937_RS14010	0.67	-1.5
3,199,598	-		DDA3937_RS14010	0.67	-0.9
3,199,619	+		DDA3937_RS14010	0.71	-1.0
3,199,619	+		DDA3937_RS14010	0.71	+0.7
3,199,620	-		DDA3937_RS14010	0.72	-0.1
3,199,620	-		DDA3937_RS14010	0.72	+1.9
3,199,629	+		DDA3937_RS14010	0.73	-0.4
3,199,647	+		DDA3937_RS14010	0.77	+0.1
3,199,648	-		DDA3937_RS14010	0.77	+0.5
3,199,648	-		DDA3937_RS14010	0.77	-1.3
3,199,685	+		DDA3937_RS14010	0.84	-1.1
3,199,685	+		DDA3937_RS14010	0.84	+0.1
3,199,686	-		DDA3937_RS14010	0.85	-0.1
3,199,686	-		DDA3937_RS14010	0.85	-0.3
3,199,686	-		DDA3937_RS14010	0.85	-0.0
3,199,686	-		DDA3937_RS14010	0.85	-0.9
3,199,686	-		DDA3937_RS14010	0.85	+0.5
3,199,695	-		DDA3937_RS14010	0.86	+0.4
3,199,718	+				-1.4
3,199,718	+				-0.1
3,199,718	+				-0.4
3,199,718	+				-1.9
3,199,719	-				+0.7
3,199,719	-				-0.3
3,199,719	-				-0.8
3,199,742	-				-1.1
3,199,757	+				+0.1
3,199,763	+				-2.2
3,199,763	+				+1.5
3,199,764	-				-0.0
3,199,764	-				-0.3
3,199,780	+				+0.2
3,199,780	+				-0.9
3,199,840	-				+0.9
3,199,851	-				-0.8
3,199,886	+				-1.9
3,199,924	+				-1.0
3,199,924	+				+0.5
3,199,924	+				-0.6
3,199,924	+				-0.3
3,199,925	-				-0.1
3,199,925	-				-0.1
3,199,925	-				-2.3
3,199,928	+				-0.9
3,199,929	-				+1.1
3,199,929	-				-0.1
3,199,947	+				-0.5
3,199,947	+				-1.1
3,199,959	+				-1.5
3,199,960	-				+0.1
3,199,961	+				+0.0
3,199,961	+				-0.1
3,200,012	+				+1.7
3,200,012	+				-1.1
3,200,012	+				-1.1
3,200,013	-				+0.4
3,200,027	+				-3.7
3,200,028	-				-1.5
3,200,056	+				-0.4
3,200,074	-				-0.5
3,200,087	+				+0.9
3,200,088	-				-0.1
3,200,093	+				+0.1
3,200,093	+				-1.7
3,200,094	-				-0.5
3,200,094	-				-0.9
3,200,094	-				+2.2
3,200,094	-				-1.6
3,200,095	+				-2.1
3,200,095	+				+0.9
3,200,096	-				-0.3
3,200,096	-				-0.2
3,200,096	-				-1.3
3,200,096	-				-0.0
3,200,102	+				-1.0
3,200,103	-				+1.0
3,200,103	-				-0.5
3,200,103	-				-0.3
3,200,146	+				-0.5
3,200,186	+				+0.4
3,200,186	+				+1.3
3,200,186	+				-0.9
3,200,187	-				+0.3
3,200,187	-				-0.7
3,200,198	+				+0.5
3,200,207	+				+0.4
3,200,252	+				+0.9
3,200,252	+				-0.5
3,200,252	+				-0.7
3,200,252	+				-0.1
3,200,253	-				-0.3
3,200,253	-				+0.2
3,200,253	-				+0.7
3,200,253	-				+1.0
3,200,285	+				+0.3
3,200,296	-				-0.6
3,200,301	+				-1.7
3,200,351	+				-1.5
3,200,351	+				-0.5
3,200,351	+				-0.1
3,200,351	+				-0.4
3,200,352	-				-0.5
3,200,352	-				-0.3
3,200,352	-				-1.5
3,200,352	-				+1.7
3,200,361	+				-1.4
3,200,366	+				-0.0
3,200,400	+				+0.8
3,200,400	+				+0.5
3,200,400	+				-0.2
3,200,401	-				+0.1
3,200,416	+				-2.5
3,200,416	+				-0.7
3,200,416	+				-0.1
3,200,416	+				-0.0
3,200,416	+				-0.9
3,200,416	+				+0.9
3,200,416	+				-0.2
3,200,416	+				-0.1
3,200,416	+				-1.0
3,200,416	+				-1.1
3,200,416	+				+0.9
3,200,416	+				+0.1
3,200,416	+				-1.1
3,200,416	+				-0.8
3,200,416	+				+0.2
3,200,416	+				-0.5
3,200,416	+				-0.5
3,200,416	+				-0.7
3,200,416	+				-0.5
3,200,416	+				-0.6
3,200,416	+				-0.3
3,200,416	+				-0.1
3,200,416	+				+0.6
3,200,416	+				+0.2
3,200,416	+				+1.0
3,200,417	-				-1.8
3,200,417	-				+1.0
3,200,417	-				+2.2
3,200,417	-				-0.5
3,200,417	-				-1.0
3,200,417	-				+1.4
3,200,417	-				+0.4
3,200,417	-				-0.1
3,200,417	-				-2.3
3,200,417	-				-0.1
3,200,417	-				-0.0
3,200,421	-				-0.1
3,200,464	+				-0.7
3,200,464	+				-1.5
3,200,465	-				-1.2
3,200,465	-				+0.3
3,200,465	-				+0.1
3,200,465	-				+2.1
3,200,471	+				+0.3
3,200,471	+				+1.9
3,200,471	+				-1.7
3,200,472	-				-0.4
3,200,493	+				-1.3
3,200,511	+				+0.2
3,200,512	-				-1.0
3,200,559	+		DDA3937_RS22820	0.13	+1.3
3,200,605	+		DDA3937_RS22820	0.23	+2.5
3,200,608	+		DDA3937_RS22820	0.24	+0.1
3,200,711	+		DDA3937_RS22820	0.45	+0.7
3,200,711	+		DDA3937_RS22820	0.45	+0.7
3,200,712	-		DDA3937_RS22820	0.45	-0.2
3,200,712	-				-0.9
3,200,742	+		DDA3937_RS22820	0.51	+0.1
3,200,790	+		DDA3937_RS22820	0.61	-1.1
3,200,790	+		DDA3937_RS22820	0.61	-0.6
3,200,807	+		DDA3937_RS22820	0.65	+0.7
3,200,807	+		DDA3937_RS22820	0.65	+0.3
3,200,808	-		DDA3937_RS22820	0.65	+0.4
3,200,808	-		DDA3937_RS22820	0.65	-1.7
3,200,860	-		DDA3937_RS22820	0.75	-0.8
3,200,965	+				-0.2
3,200,980	+				-0.2
3,200,980	+				-0.0
3,200,980	+				+1.1
3,200,980	+				-0.7
3,200,981	-				-1.1
3,200,981	-				+0.6
3,201,003	-				+1.0
3,201,003	-				-0.4
3,201,049	+				-0.4
3,201,220	+				-1.5
3,201,221	-				+1.5
3,201,328	+				-1.4
3,201,390	-				+0.2
3,201,394	-				+0.1
3,201,452	-				-0.4
3,201,459	+				-1.0
3,201,474	-				-0.1
3,201,475	+				-2.7
3,201,475	+				+1.0
3,201,476	-				-0.1
3,201,489	+				-1.9
3,201,492	+				-2.9
3,201,493	-				-1.6
3,201,637	-				-1.7
3,201,728	+				-0.7
3,201,729	-				-0.5
3,201,814	+				+0.8