Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21525

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,902,378	+		DDA3937_RS21520	0.25	-0.7
4,902,379	-		DDA3937_RS21520	0.25	-0.4
4,902,401	+		DDA3937_RS21520	0.27	-0.6
4,902,401	+		DDA3937_RS21520	0.27	-0.5
4,902,402	-		DDA3937_RS21520	0.27	-0.2
4,902,476	+		DDA3937_RS21520	0.33	-0.5
4,902,482	+		DDA3937_RS21520	0.34	+3.8
4,902,513	+		DDA3937_RS21520	0.36	+0.0
4,902,514	-		DDA3937_RS21520	0.36	-0.4
4,902,525	+		DDA3937_RS21520	0.37	-0.1
4,902,546	-		DDA3937_RS21520	0.39	-0.7
4,902,559	+		DDA3937_RS21520	0.40	+0.5
4,902,560	-		DDA3937_RS21520	0.40	+0.9
4,902,579	+		DDA3937_RS21520	0.42	-0.5
4,902,579	+		DDA3937_RS21520	0.42	-1.2
4,902,579	+		DDA3937_RS21520	0.42	-0.3
4,902,579	+		DDA3937_RS21520	0.42	-0.6
4,902,579	+		DDA3937_RS21520	0.42	-0.1
4,902,579	+		DDA3937_RS21520	0.42	-0.1
4,902,579	+		DDA3937_RS21520	0.42	-0.2
4,902,580	-		DDA3937_RS21520	0.42	+2.1
4,902,580	-		DDA3937_RS21520	0.42	-1.5
4,902,580	-		DDA3937_RS21520	0.42	+0.0
4,902,583	-		DDA3937_RS21520	0.42	-0.4
4,902,629	+		DDA3937_RS21520	0.46	-1.2
4,902,629	+		DDA3937_RS21520	0.46	-0.4
4,902,688	+		DDA3937_RS21520	0.51	+0.1
4,902,689	-		DDA3937_RS21520	0.51	-0.7
4,902,705	-		DDA3937_RS21520	0.52	-0.4
4,902,719	+		DDA3937_RS21520	0.53	-0.5
4,902,719	+		DDA3937_RS21520	0.53	-0.4
4,902,719	+		DDA3937_RS21520	0.53	-0.7
4,902,719	+		DDA3937_RS21520	0.53	-0.3
4,902,719	+		DDA3937_RS21520	0.53	-0.5
4,902,719	+		DDA3937_RS21520	0.53	-2.2
4,902,719	+		DDA3937_RS21520	0.53	-1.0
4,902,719	+		DDA3937_RS21520	0.53	-0.7
4,902,719	+		DDA3937_RS21520	0.53	-1.7
4,902,720	-		DDA3937_RS21520	0.53	+0.5
4,902,720	-		DDA3937_RS21520	0.53	-0.8
4,902,720	-		DDA3937_RS21520	0.53	-1.4
4,902,720	-		DDA3937_RS21520	0.53	-0.8
4,902,720	-		DDA3937_RS21520	0.53	+0.8
4,902,772	+		DDA3937_RS21520	0.58	-0.2
4,902,772	+		DDA3937_RS21520	0.58	-1.2
4,902,772	+		DDA3937_RS21520	0.58	+0.6
4,902,772	+		DDA3937_RS21520	0.58	-0.0
4,902,964	-		DDA3937_RS21520	0.73	+0.8
4,902,964	-		DDA3937_RS21520	0.73	-1.6
4,902,964	-		DDA3937_RS21520	0.73	-0.5
4,902,964	-		DDA3937_RS21520	0.73	-1.1
4,903,018	+		DDA3937_RS21520	0.78	-0.8
4,903,018	+		DDA3937_RS21520	0.78	+0.8
4,903,019	-		DDA3937_RS21520	0.78	-0.1
4,903,019	-		DDA3937_RS21520	0.78	+0.3
4,903,021	+		DDA3937_RS21520	0.78	+0.3
4,903,022	-		DDA3937_RS21520	0.78	-2.0
4,903,192	-				-1.1
4,903,196	+				-0.8
4,903,197	-				-2.2
4,903,238	+				+0.2
4,903,239	-				-0.6
4,903,239	-				+0.4
4,903,319	-				-0.4
4,903,339	+				+1.8
4,903,339	+				-2.0
4,903,339	+				-0.8
4,903,340	-				-0.1
4,903,350	+				-1.2
4,903,391	+				-0.5
4,903,392	-				-0.6
4,903,392	-				-0.6
4,903,441	+				+0.0
4,903,457	-		DDA3937_RS21525	0.10	-0.6
4,903,501	+		DDA3937_RS21525	0.15	+2.5
4,903,517	+		DDA3937_RS21525	0.16	-0.9
4,903,517	+		DDA3937_RS21525	0.16	-0.5
4,903,518	-		DDA3937_RS21525	0.16	-0.6
4,903,518	-		DDA3937_RS21525	0.16	-0.0
4,903,528	+		DDA3937_RS21525	0.17	+0.4
4,903,529	-		DDA3937_RS21525	0.17	-1.5
4,903,608	+		DDA3937_RS21525	0.25	-0.2
4,903,608	+		DDA3937_RS21525	0.25	-0.6
4,903,609	-		DDA3937_RS21525	0.25	-0.6
4,903,609	-		DDA3937_RS21525	0.25	-0.0
4,903,677	-		DDA3937_RS21525	0.32	-2.8
4,903,695	+		DDA3937_RS21525	0.34	-1.5
4,903,696	-		DDA3937_RS21525	0.34	-0.2
4,903,696	-		DDA3937_RS21525	0.34	-0.4
4,903,696	-		DDA3937_RS21525	0.34	+0.0
4,903,696	-		DDA3937_RS21525	0.34	-0.2
4,903,696	-		DDA3937_RS21525	0.34	+0.3
4,903,696	-		DDA3937_RS21525	0.34	-0.1
4,903,696	-		DDA3937_RS21525	0.34	-2.2
4,903,698	+		DDA3937_RS21525	0.34	-0.1
4,903,699	-		DDA3937_RS21525	0.34	+0.4
4,903,703	+		DDA3937_RS21525	0.35	-0.3
4,903,704	-		DDA3937_RS21525	0.35	-0.1
4,903,704	-		DDA3937_RS21525	0.35	+1.6
4,903,802	-		DDA3937_RS21525	0.45	-0.4
4,903,993	+		DDA3937_RS21525	0.64	+0.0
4,904,025	+		DDA3937_RS21525	0.67	-0.1
4,904,025	+		DDA3937_RS21525	0.67	-1.5
4,904,026	-		DDA3937_RS21525	0.67	+1.4
4,904,035	+		DDA3937_RS21525	0.68	-1.2
4,904,036	-		DDA3937_RS21525	0.68	-0.7
4,904,036	-				-1.5
4,904,104	-		DDA3937_RS21525	0.75	-0.4
4,904,104	-		DDA3937_RS21525	0.75	-0.4
4,904,115	+		DDA3937_RS21525	0.76	-0.5
4,904,115	+		DDA3937_RS21525	0.76	+0.1
4,904,115	+		DDA3937_RS21525	0.76	-0.5
4,904,115	+		DDA3937_RS21525	0.76	-2.5
4,904,115	+		DDA3937_RS21525	0.76	-0.1
4,904,116	-		DDA3937_RS21525	0.76	-0.9
4,904,116	-		DDA3937_RS21525	0.76	+0.0
4,904,116	-		DDA3937_RS21525	0.76	-0.7
4,904,116	-		DDA3937_RS21525	0.76	+0.4
4,904,116	-		DDA3937_RS21525	0.76	-0.7
4,904,116	-		DDA3937_RS21525	0.76	-0.5
4,904,116	-		DDA3937_RS21525	0.76	-0.1
4,904,174	+				+1.3
4,904,174	+		DDA3937_RS21525	0.82	-1.2
4,904,175	-		DDA3937_RS21525	0.82	+0.5
4,904,175	-		DDA3937_RS21525	0.82	-0.4
4,904,176	+		DDA3937_RS21525	0.82	-0.4
4,904,176	+		DDA3937_RS21525	0.82	-0.4
4,904,176	+		DDA3937_RS21525	0.82	-0.2
4,904,176	+		DDA3937_RS21525	0.82	-0.1
4,904,177	-		DDA3937_RS21525	0.83	+0.2
4,904,177	-		DDA3937_RS21525	0.83	-0.1
4,904,301	+				-1.0
4,904,302	-				-0.5
4,904,302	-				-0.4
4,904,353	-				-2.7
4,904,356	-				+0.8
4,904,356	-				-0.3
4,904,367	+				-0.3
4,904,367	+				-0.4
4,904,381	+				-0.8
4,904,490	+		DDA3937_RS21720	0.21	-2.5
4,904,508	+		DDA3937_RS21720	0.24	-2.2
4,904,567	-		DDA3937_RS21720	0.35	-0.5
4,904,613	+		DDA3937_RS21720	0.44	-0.9
4,904,669	+		DDA3937_RS21720	0.54	+0.1
4,904,690	-		DDA3937_RS21720	0.58	-0.6
4,904,753	-				-0.7
4,904,765	+		DDA3937_RS21720	0.72	-2.0
4,904,765	+		DDA3937_RS21720	0.72	-0.3
4,904,765	+		DDA3937_RS21720	0.72	-0.8
4,904,813	+		DDA3937_RS21720	0.81	+0.8
4,904,860	-		DDA3937_RS21720	0.89	-0.7
4,904,887	+				-0.4
4,904,888	-				-0.8
4,904,908	+				-1.6
4,905,032	-		DDA3937_RS21535	0.18	+0.6
4,905,062	+		DDA3937_RS21535	0.22	-1.5
4,905,063	-		DDA3937_RS21535	0.22	+0.8
4,905,065	+		DDA3937_RS21535	0.23	-0.2
4,905,068	+		DDA3937_RS21535	0.23	-0.6
4,905,068	+		DDA3937_RS21535	0.23	-0.6
4,905,093	+		DDA3937_RS21535	0.27	-0.1
4,905,169	+		DDA3937_RS21535	0.39	-0.1
4,905,169	+		DDA3937_RS21535	0.39	-0.2
4,905,169	+		DDA3937_RS21535	0.39	-0.9
4,905,170	-		DDA3937_RS21535	0.40	-1.0
4,905,173	+		DDA3937_RS21535	0.40	+0.6
4,905,173	+		DDA3937_RS21535	0.40	-0.3
4,905,174	-		DDA3937_RS21535	0.40	-1.0
4,905,251	-		DDA3937_RS21535	0.52	-1.0
4,905,334	-		DDA3937_RS21535	0.66	-0.3