Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21380

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,866,809	+				-0.7
4,866,838	-				+0.0
4,866,838	-				-1.6
4,866,840	+				+0.0
4,866,840	+				+2.9
4,866,840	+				+0.5
4,866,840	+				-1.1
4,866,841	-				+0.5
4,866,848	+				+0.1
4,866,882	+				+1.3
4,866,882	+				+1.8
4,866,882	+				-1.4
4,866,882	+				-0.7
4,866,883	-				+0.2
4,866,883	-				+2.5
4,866,883	-				-1.2
4,866,883	-				+0.4
4,866,975	+				+1.7
4,866,975	+				-0.7
4,866,975	+				-1.2
4,866,976	-				-1.2
4,866,976	-				-1.0
4,866,976	-				-1.5
4,866,976	-				-1.0
4,866,976	-				-1.2
4,866,982	-		DDA3937_RS21375	0.10	-1.7
4,867,098	+		DDA3937_RS21375	0.23	-0.7
4,867,099	-		DDA3937_RS21375	0.23	-1.7
4,867,100	+		DDA3937_RS21375	0.23	-1.7
4,867,101	-		DDA3937_RS21375	0.24	-1.0
4,867,110	+		DDA3937_RS21375	0.25	+0.3
4,867,140	+				-1.2
4,867,140	+		DDA3937_RS21375	0.28	-0.2
4,867,141	-		DDA3937_RS21375	0.28	+0.0
4,867,141	-		DDA3937_RS21375	0.28	-0.7
4,867,143	-		DDA3937_RS21375	0.28	-0.2
4,867,217	-		DDA3937_RS21375	0.36	-0.2
4,867,283	+		DDA3937_RS21375	0.44	-1.2
4,867,391	+		DDA3937_RS21375	0.56	+0.2
4,867,392	-		DDA3937_RS21375	0.56	-1.3
4,867,392	-		DDA3937_RS21375	0.56	-2.0
4,867,777	+				+0.1
4,867,951	+				-0.9
4,867,952	-				-1.1
4,867,954	+				-0.9
4,867,954	+				+0.2
4,867,954	+				-0.8
4,867,955	-				+0.9
4,867,955	-				+1.2
4,867,955	-				+1.2
4,868,003	+		DDA3937_RS21380	0.11	+0.5
4,868,004	-		DDA3937_RS21380	0.11	+0.6
4,868,117	+		DDA3937_RS21380	0.17	-1.7
4,868,303	+		DDA3937_RS21380	0.26	+0.1
4,868,303	+		DDA3937_RS21380	0.26	+5.2
4,868,303	+		DDA3937_RS21380	0.26	-0.3
4,868,379	-				-0.2
4,868,379	-		DDA3937_RS21380	0.30	-0.1
4,868,379	-		DDA3937_RS21380	0.30	-0.6
4,868,459	+				+0.9
4,868,459	+		DDA3937_RS21380	0.34	+0.5
4,868,470	+		DDA3937_RS21380	0.34	-0.2
4,868,470	+		DDA3937_RS21380	0.34	-0.8
4,868,471	-				-1.2
4,868,471	-		DDA3937_RS21380	0.34	+0.8
4,868,472	+		DDA3937_RS21380	0.34	+1.1
4,868,473	-		DDA3937_RS21380	0.35	+1.3
4,868,473	-		DDA3937_RS21380	0.35	+0.8
4,868,473	-		DDA3937_RS21380	0.35	-0.2
4,868,473	-		DDA3937_RS21380	0.35	-1.1
4,868,473	-		DDA3937_RS21380	0.35	+3.2
4,868,509	+		DDA3937_RS21380	0.36	-0.4
4,868,755	+		DDA3937_RS21380	0.49	-0.0
4,868,755	+		DDA3937_RS21380	0.49	-0.7
4,868,756	-		DDA3937_RS21380	0.49	+0.1
4,868,756	-		DDA3937_RS21380	0.49	-1.2
4,868,756	-		DDA3937_RS21380	0.49	-0.1
4,868,823	+		DDA3937_RS21380	0.52	+1.4
4,868,920	+		DDA3937_RS21380	0.57	-0.1
4,868,920	+		DDA3937_RS21380	0.57	-0.8
4,868,921	-		DDA3937_RS21380	0.57	+0.1
4,868,921	-		DDA3937_RS21380	0.57	-0.2
4,868,921	-		DDA3937_RS21380	0.57	+0.5
4,868,924	+		DDA3937_RS21380	0.57	+1.2
4,868,924	+		DDA3937_RS21380	0.57	+0.9
4,868,924	+		DDA3937_RS21380	0.57	-0.1
4,868,924	+		DDA3937_RS21380	0.57	-1.0
4,868,925	-		DDA3937_RS21380	0.57	+0.3
4,868,925	-		DDA3937_RS21380	0.57	-0.7
4,868,925	-		DDA3937_RS21380	0.57	-0.4
4,869,033	-		DDA3937_RS21380	0.63	+0.7
4,869,053	+		DDA3937_RS21380	0.64	+0.9
4,869,123	-		DDA3937_RS21380	0.67	+0.6
4,869,124	+		DDA3937_RS21380	0.67	-0.1
4,869,124	+		DDA3937_RS21380	0.67	+0.5
4,869,125	-		DDA3937_RS21380	0.67	+0.9
4,869,125	-		DDA3937_RS21380	0.67	-1.0
4,869,132	-		DDA3937_RS21380	0.68	-0.1
4,869,132	-		DDA3937_RS21380	0.68	+0.0
4,869,174	-		DDA3937_RS21380	0.70	+1.3
4,869,187	+		DDA3937_RS21380	0.70	-1.5
4,869,187	+		DDA3937_RS21380	0.70	-0.4
4,869,187	+		DDA3937_RS21380	0.70	+0.6
4,869,187	+		DDA3937_RS21380	0.70	-0.1
4,869,187	+		DDA3937_RS21380	0.70	+0.3
4,869,187	+		DDA3937_RS21380	0.70	-0.6
4,869,187	+		DDA3937_RS21380	0.70	-0.8
4,869,187	+		DDA3937_RS21380	0.70	-1.8
4,869,187	+		DDA3937_RS21380	0.70	-0.5
4,869,188	-		DDA3937_RS21380	0.70	+0.4
4,869,188	-		DDA3937_RS21380	0.70	-0.5
4,869,188	-		DDA3937_RS21380	0.70	-0.2
4,869,188	-		DDA3937_RS21380	0.70	-1.2
4,869,188	-		DDA3937_RS21380	0.70	+1.6
4,869,188	-		DDA3937_RS21380	0.70	-0.4
4,869,191	+		DDA3937_RS21380	0.71	-0.7
4,869,192	-		DDA3937_RS21380	0.71	+0.8
4,869,215	+		DDA3937_RS21380	0.72	+0.2
4,869,475	+		DDA3937_RS21380	0.85	-0.3
4,869,526	+		DDA3937_RS21380	0.87	-1.7
4,869,529	+		DDA3937_RS21380	0.88	+0.4
4,869,530	-		DDA3937_RS21380	0.88	+0.2
4,869,530	-		DDA3937_RS21380	0.88	+1.1
4,869,530	-		DDA3937_RS21380	0.88	+1.1
4,869,530	-		DDA3937_RS21380	0.88	-0.1
4,869,609	+				+1.0
4,869,704	+				-0.0
4,869,704	+				-1.5
4,869,706	+				-1.0
4,869,717	+				-1.0
4,869,754	+				-1.1
4,869,755	-				+2.3
4,869,820	+				-0.1
4,869,820	+				+0.3
4,869,821	-				-1.5
4,869,821	-				-0.5
4,869,821	-				+0.2
4,869,821	-				+0.1
4,869,821	-				-0.7
4,869,821	-				-0.8
4,869,830	-				-0.8
4,869,830	-				+0.5
4,869,834	+				+0.1
4,869,861	+				-0.6
4,869,861	+				-0.1
4,869,861	+				+1.3
4,869,861	+				-1.5
4,869,861	+				+0.3
4,869,862	-				+0.3
4,869,862	-				-0.8
4,869,862	-				-0.0
4,869,874	+		DDA3937_RS21385	0.10	+1.3
4,869,874	+		DDA3937_RS21385	0.10	+0.9
4,869,874	+		DDA3937_RS21385	0.10	-0.2
4,869,874	+		DDA3937_RS21385	0.10	-0.3
4,869,875	-		DDA3937_RS21385	0.10	-0.2
4,869,876	+		DDA3937_RS21385	0.10	+0.5
4,869,877	-		DDA3937_RS21385	0.11	-1.8
4,869,877	-		DDA3937_RS21385	0.11	-0.5
4,869,877	-		DDA3937_RS21385	0.11	-2.0
4,869,877	-		DDA3937_RS21385	0.11	+1.5
4,869,877	-		DDA3937_RS21385	0.11	+0.8
4,869,877	-		DDA3937_RS21385	0.11	-0.2
4,869,887	+		DDA3937_RS21385	0.12	-0.8
4,869,888	-		DDA3937_RS21385	0.12	+0.5
4,869,896	-		DDA3937_RS21385	0.12	+0.3
4,869,917	-		DDA3937_RS21385	0.15	+0.3
4,870,040	+		DDA3937_RS21385	0.27	-0.6
4,870,093	-		DDA3937_RS21385	0.33	-0.4
4,870,093	-		DDA3937_RS21385	0.33	+0.2
4,870,093	-		DDA3937_RS21385	0.33	+1.5
4,870,122	+		DDA3937_RS21385	0.35	-1.2
4,870,122	+		DDA3937_RS21385	0.35	+0.7
4,870,123	-		DDA3937_RS21385	0.36	-0.1
4,870,162	+		DDA3937_RS21385	0.40	-0.3
4,870,163	-		DDA3937_RS21385	0.40	+1.1
4,870,163	-		DDA3937_RS21385	0.40	-2.0
4,870,249	+		DDA3937_RS21385	0.48	-0.2
4,870,249	+		DDA3937_RS21385	0.48	-0.5
4,870,249	+		DDA3937_RS21385	0.48	+0.0
4,870,250	-		DDA3937_RS21385	0.48	-0.6
4,870,250	-		DDA3937_RS21385	0.48	-0.7
4,870,250	-		DDA3937_RS21385	0.48	+0.7
4,870,261	-		DDA3937_RS21385	0.50	+0.5
4,870,273	+		DDA3937_RS21385	0.51	+0.3
4,870,273	+		DDA3937_RS21385	0.51	-1.6
4,870,274	-				+2.1
4,870,281	+		DDA3937_RS21385	0.52	-0.7
4,870,345	+		DDA3937_RS21385	0.58	-1.6
4,870,345	+		DDA3937_RS21385	0.58	-0.9
4,870,395	+		DDA3937_RS21385	0.63	+0.6
4,870,396	-		DDA3937_RS21385	0.63	-0.4
4,870,524	+		DDA3937_RS21385	0.76	+0.6
4,870,524	+		DDA3937_RS21385	0.76	-0.7
4,870,524	+		DDA3937_RS21385	0.76	-1.1
4,870,525	-		DDA3937_RS21385	0.76	-0.1
4,870,528	+		DDA3937_RS21385	0.77	-0.1
4,870,528	+		DDA3937_RS21385	0.77	+0.3
4,870,528	+		DDA3937_RS21385	0.77	-0.4
4,870,528	+		DDA3937_RS21385	0.77	+1.1
4,870,529	-		DDA3937_RS21385	0.77	-1.1
4,870,529	-		DDA3937_RS21385	0.77	-0.1
4,870,670	-				+0.5
4,870,732	+				-0.8
4,870,732	+				-0.1